Wall clock time and date at job start Tue Mar 31 2020 16:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47051 * 2 1 4 4 C 1.50700 * 109.47053 * 119.99605 * 2 1 3 5 5 H 1.08002 * 119.99880 * 125.28093 * 4 2 1 6 6 C 1.37879 * 120.00116 * 305.28520 * 4 2 1 7 7 N 1.31516 * 120.00184 * 149.81001 * 6 4 2 8 8 Si 1.86795 * 119.99872 * 329.80332 * 6 4 2 9 9 H 1.48503 * 109.47318 * 180.02562 * 8 6 4 10 10 H 1.48501 * 109.47513 * 300.00345 * 8 6 4 11 11 H 1.48505 * 109.47241 * 60.00236 * 8 6 4 12 12 C 1.52996 * 109.47499 * 239.99840 * 2 1 3 13 13 S 1.81399 * 109.47074 * 59.99882 * 12 2 1 14 14 O 1.42095 * 110.54471 * 291.62733 * 13 12 2 15 15 O 1.42098 * 110.54296 * 68.37935 * 13 12 2 16 16 N 1.65606 * 104.44810 * 180.02562 * 13 12 2 17 17 C 1.46929 * 120.63021 * 256.75073 * 16 13 12 18 18 C 1.52756 * 109.00561 * 233.58696 * 17 16 13 19 19 C 1.53039 * 109.38350 * 305.58647 * 18 17 16 20 20 C 1.53037 * 109.53686 * 61.24300 * 19 18 17 21 21 C 1.46924 * 120.62981 * 77.03333 * 16 13 12 22 22 C 1.53000 * 109.58791 * 6.43329 * 21 16 13 23 23 C 1.50701 * 109.58452 * 246.15162 * 21 16 13 24 24 N 1.34785 * 119.99679 * 33.88893 * 23 21 16 25 25 O 1.21278 * 120.00194 * 213.88082 * 23 21 16 26 26 H 1.08998 * 109.47267 * 292.68976 * 1 2 3 27 27 H 1.09003 * 109.46838 * 52.69281 * 1 2 3 28 28 H 1.08997 * 109.46600 * 172.68825 * 1 2 3 29 29 H 1.09009 * 109.46936 * 183.45582 * 3 2 1 30 30 H 1.08996 * 109.47011 * 303.45158 * 3 2 1 31 31 H 1.08997 * 109.47284 * 63.45634 * 3 2 1 32 32 H 0.96995 * 119.99744 * 354.96344 * 7 6 4 33 33 H 1.08999 * 109.47274 * 179.97438 * 12 2 1 34 34 H 1.09008 * 109.46987 * 300.00052 * 12 2 1 35 35 H 1.09002 * 109.58218 * 353.41935 * 17 16 13 36 36 H 1.08997 * 109.58266 * 113.84321 * 17 16 13 37 37 H 1.09004 * 109.56178 * 185.55301 * 18 17 16 38 38 H 1.09001 * 109.36381 * 65.49974 * 18 17 16 39 39 H 1.09000 * 109.46359 * 301.21883 * 19 18 17 40 40 H 1.09006 * 109.46230 * 181.26477 * 19 18 17 41 41 H 1.09007 * 109.49775 * 178.68106 * 20 19 18 42 42 H 1.08997 * 109.49588 * 58.59233 * 20 19 18 43 43 H 1.09000 * 109.46866 * 68.85217 * 22 21 16 44 44 H 1.09000 * 109.47248 * 188.84850 * 22 21 16 45 45 H 1.08997 * 109.47431 * 308.85442 * 22 21 16 46 46 H 0.96994 * 119.99916 * 4.79850 * 24 23 21 47 47 H 0.97002 * 119.99297 * 184.79841 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.7217 -1.5361 1.1338 6 6 1.6118 -0.3061 2.4798 7 7 1.5227 -1.1802 3.4585 8 14 1.1688 1.4832 2.7825 9 1 0.7507 1.6572 4.1968 10 1 2.3507 2.3392 2.5074 11 1 0.0534 1.8758 1.8842 12 6 2.0401 -0.7212 -1.2492 13 16 1.4354 0.1338 -2.7303 14 8 0.0281 -0.0184 -2.8544 15 8 2.0481 1.4099 -2.8544 16 7 2.0532 -0.7410 -3.9935 17 6 3.2099 -0.2457 -4.7522 18 6 2.8579 -0.2245 -6.2385 19 6 2.3729 -1.6118 -6.6655 20 6 1.1155 -1.9802 -5.8748 21 6 1.4512 -2.0240 -4.3808 22 6 0.1737 -2.2562 -3.5715 23 6 2.4276 -3.1408 -4.1149 24 7 3.2675 -3.0655 -3.0636 25 8 2.4574 -4.1073 -4.8469 26 1 -0.3634 0.3964 0.9481 27 1 -0.3633 0.6229 -0.8174 28 1 -0.3632 -1.0193 -0.1308 29 1 3.1283 1.4431 -0.0620 30 1 1.6270 1.9739 -0.8574 31 1 1.7281 1.9382 0.9193 32 1 1.6820 -2.1210 3.2843 33 1 3.1301 -0.7208 -1.2493 34 1 1.6767 -1.7490 -1.2491 35 1 3.4583 0.7631 -4.4225 36 1 4.0623 -0.9055 -4.5907 37 1 3.7398 0.0471 -6.8186 38 1 2.0681 0.5064 -6.4124 39 1 3.1540 -2.3461 -6.4684 40 1 2.1427 -1.6040 -7.7309 41 1 0.7573 -2.9583 -6.1960 42 1 0.3422 -1.2328 -6.0522 43 1 -0.5892 -1.5433 -3.8845 44 1 -0.1854 -3.2711 -3.7426 45 1 0.3854 -2.1196 -2.5111 46 1 3.1970 -2.3272 -2.4384 47 1 3.9425 -3.7496 -2.9322 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451396002.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:02 Heat of formation + Delta-G solvation = -117.233336 kcal Electronic energy + Delta-G solvation = -30228.436606 eV Core-core repulsion = 26345.080593 eV Total energy + Delta-G solvation = -3883.356012 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.71245 -38.71780 -38.51897 -38.39328 -36.98813 -35.13239 -34.12014 -33.81480 -33.12869 -29.12982 -28.40494 -28.12961 -26.60843 -25.56903 -24.65985 -22.26341 -21.59809 -21.13801 -19.74470 -19.27068 -18.74617 -18.11231 -17.90140 -17.26683 -16.91939 -16.62686 -16.21977 -15.59593 -15.49533 -15.21360 -15.08316 -15.00323 -14.98305 -14.67156 -14.37501 -14.18461 -14.09153 -13.89070 -13.55128 -13.30128 -13.08390 -12.98688 -12.87421 -12.78622 -12.63539 -12.37656 -12.19986 -12.03178 -11.86464 -11.79226 -11.68211 -11.60037 -11.47389 -11.12216 -10.98632 -10.81756 -10.77294 -10.27498 -10.06599 -8.74234 -6.30863 -0.85027 1.28304 1.43398 1.46541 1.66503 1.68946 2.35194 2.44631 2.73278 2.94650 3.08990 3.25952 3.50562 3.64877 3.74004 3.84857 3.96302 4.04881 4.13870 4.26055 4.29145 4.40902 4.51049 4.56356 4.62452 4.63812 4.68342 4.70729 4.72934 4.85352 4.92031 4.98405 5.10693 5.11027 5.15608 5.17281 5.29394 5.39036 5.41279 5.44812 5.54721 5.75570 6.00046 6.09550 6.17221 6.60823 7.10555 7.36672 8.59703 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020454 B = 0.004774 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.605127 B = 5864.258991 C = 6392.168053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.057 3.943 3 C -0.187 4.187 4 C -0.598 4.598 5 H 0.041 0.959 6 C 0.004 3.996 7 N -0.918 5.918 8 Si 1.058 2.942 9 H -0.306 1.306 10 H -0.263 1.263 11 H -0.250 1.250 12 C -0.600 4.600 13 S 2.606 3.394 14 O -0.964 6.964 15 O -0.972 6.972 16 N -0.990 5.990 17 C 0.097 3.903 18 C -0.129 4.129 19 C -0.118 4.118 20 C -0.108 4.108 21 C 0.166 3.834 22 C -0.185 4.185 23 C 0.523 3.477 24 N -0.845 5.845 25 O -0.563 6.563 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.047 0.953 32 H 0.262 0.738 33 H 0.142 0.858 34 H 0.132 0.868 35 H 0.105 0.895 36 H 0.080 0.920 37 H 0.099 0.901 38 H 0.069 0.931 39 H 0.056 0.944 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.116 0.884 44 H 0.090 0.910 45 H 0.055 0.945 46 H 0.402 0.598 47 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.750 0.751 -19.319 19.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.054 3.946 3 C -0.244 4.244 4 C -0.636 4.636 5 H 0.059 0.941 6 C -0.198 4.198 7 N -0.551 5.551 8 Si 0.885 3.115 9 H -0.234 1.234 10 H -0.189 1.189 11 H -0.175 1.175 12 C -0.731 4.731 13 S 2.705 3.295 14 O -0.955 6.955 15 O -0.962 6.962 16 N -0.829 5.829 17 C -0.026 4.026 18 C -0.168 4.168 19 C -0.156 4.156 20 C -0.148 4.148 21 C 0.075 3.925 22 C -0.243 4.243 23 C 0.306 3.694 24 N -0.410 5.410 25 O -0.441 6.441 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.160 0.840 34 H 0.150 0.850 35 H 0.123 0.877 36 H 0.099 0.901 37 H 0.117 0.883 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.134 0.866 44 H 0.109 0.891 45 H 0.074 0.926 46 H 0.233 0.767 47 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 1.660 2.043 -18.810 18.993 hybrid contribution 1.265 -1.979 0.267 2.364 sum 2.925 0.063 -18.543 18.772 Atomic orbital electron populations 1.22630 0.97004 1.01951 1.01598 1.18082 0.92471 0.92035 0.92046 1.22815 1.03006 0.97597 1.00957 1.21721 1.31594 1.18809 0.91507 0.94051 1.26640 0.93204 1.07016 0.92976 1.70965 1.43323 1.03531 1.37258 0.84128 0.78720 0.73841 0.74799 1.23417 1.18908 1.17547 1.30721 1.12931 1.13352 1.16084 1.05207 0.74819 0.74376 0.75105 1.93593 1.30250 1.86328 1.85285 1.93504 1.78445 1.38477 1.85812 1.57918 1.45123 1.32558 1.47288 1.21793 0.86670 1.01340 0.92842 1.21829 1.03014 0.97605 0.94390 1.21523 0.96799 0.96644 1.00621 1.21799 0.99539 1.03731 0.89697 1.20664 0.91878 0.80466 0.99459 1.22828 0.96626 1.05939 0.98954 1.20947 0.81138 0.87305 0.80007 1.44081 1.37141 1.31139 1.28631 1.90713 1.70387 1.34172 1.48818 0.92755 0.92733 0.92344 0.90934 0.92334 0.93490 0.92894 0.83969 0.84975 0.87728 0.90150 0.88308 0.91203 0.92530 0.89564 0.89558 0.89446 0.86559 0.89098 0.92569 0.76708 0.75708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.29 7.40 71.98 0.53 -6.76 16 2 C 0.06 2.36 0.52 -52.93 -0.03 2.34 16 3 C -0.19 -7.54 7.32 71.98 0.53 -7.01 16 4 C -0.60 -30.27 8.41 25.60 0.22 -30.05 16 5 H 0.04 2.22 7.99 -2.91 -0.02 2.19 16 6 C 0.00 0.24 5.02 84.65 0.43 0.67 16 7 N -0.92 -53.78 13.70 21.45 0.29 -53.49 16 8 Si 1.06 48.45 23.46 68.60 1.61 50.06 16 9 H -0.31 -14.44 7.11 99.48 0.71 -13.74 16 10 H -0.26 -11.08 6.78 99.48 0.67 -10.40 16 11 H -0.25 -10.39 5.84 99.48 0.58 -9.81 16 12 C -0.60 -19.47 3.17 71.98 0.23 -19.24 16 13 S 2.61 78.47 3.87 -56.49 -0.22 78.25 16 14 O -0.96 -32.01 11.45 -127.65 -1.46 -33.47 16 15 O -0.97 -32.56 13.99 -127.65 -1.79 -34.34 16 16 N -0.99 -23.09 2.22 -473.90 -1.05 -24.14 16 17 C 0.10 1.87 6.14 86.22 0.53 2.40 16 18 C -0.13 -2.06 6.06 30.53 0.19 -1.87 16 19 C -0.12 -2.03 5.70 30.62 0.17 -1.86 16 20 C -0.11 -2.18 4.54 30.67 0.14 -2.04 16 21 C 0.17 3.87 0.97 2.84 0.00 3.88 16 22 C -0.19 -4.60 6.90 71.98 0.50 -4.10 16 23 C 0.52 12.89 5.64 87.66 0.49 13.38 16 24 N -0.84 -17.77 8.74 -173.53 -1.52 -19.29 16 25 O -0.56 -16.69 16.28 -3.02 -0.05 -16.74 16 26 H 0.05 2.38 4.59 -2.39 -0.01 2.37 16 27 H 0.05 2.08 6.01 -2.39 -0.01 2.07 16 28 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.07 2.72 8.14 -2.38 -0.02 2.70 16 30 H 0.06 2.18 5.72 -2.39 -0.01 2.17 16 31 H 0.05 1.95 2.27 -2.39 -0.01 1.94 16 32 H 0.26 15.32 8.73 -92.71 -0.81 14.51 16 33 H 0.14 3.95 7.50 -2.39 -0.02 3.93 16 34 H 0.13 4.01 5.91 -2.39 -0.01 3.99 16 35 H 0.10 2.06 6.59 -2.39 -0.02 2.04 16 36 H 0.08 1.31 7.98 -2.39 -0.02 1.29 16 37 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 38 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.06 1.11 6.92 -2.39 -0.02 1.10 16 40 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 41 H 0.09 1.74 7.68 -2.38 -0.02 1.73 16 42 H 0.09 1.63 8.13 -2.39 -0.02 1.61 16 43 H 0.12 2.98 6.34 -2.39 -0.02 2.97 16 44 H 0.09 2.01 8.12 -2.39 -0.02 1.99 16 45 H 0.06 1.49 4.70 -2.39 -0.01 1.48 16 46 H 0.40 8.32 4.85 -92.71 -0.45 7.87 16 47 H 0.41 7.33 8.93 -92.71 -0.83 6.50 16 Total: -1.00 -66.47 340.88 -0.71 -67.18 By element: Atomic # 1 Polarization: 36.70 SS G_CDS: -0.46 Total: 36.24 kcal Atomic # 6 Polarization: -54.20 SS G_CDS: 3.92 Total: -50.28 kcal Atomic # 7 Polarization: -94.64 SS G_CDS: -2.27 Total: -96.91 kcal Atomic # 8 Polarization: -81.26 SS G_CDS: -3.30 Total: -84.55 kcal Atomic # 14 Polarization: 48.45 SS G_CDS: 1.61 Total: 50.06 kcal Atomic # 16 Polarization: 78.47 SS G_CDS: -0.22 Total: 78.25 kcal Total: -66.47 -0.71 -67.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451396002.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.052 kcal (2) G-P(sol) polarization free energy of solvation -66.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds