Wall clock time and date at job start Tue Mar 31 2020 16:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38704 * 119.12805 * 2 1 4 4 C 1.39347 * 119.29607 * 180.02562 * 3 2 1 5 5 C 1.47907 * 121.11186 * 179.97438 * 4 3 2 6 6 O 1.21545 * 120.00087 * 180.02562 * 5 4 3 7 7 N 1.34776 * 120.00129 * 0.02663 * 5 4 3 8 8 C 1.46503 * 119.99929 * 180.02562 * 7 5 4 9 9 C 1.53001 * 109.46603 * 179.97438 * 8 7 5 10 10 C 1.52997 * 109.47205 * 299.99299 * 9 8 7 11 11 C 1.52995 * 109.47471 * 59.99947 * 9 8 7 12 12 C 1.50703 * 109.46504 * 179.97438 * 9 8 7 13 13 H 1.08000 * 120.00541 * 359.97438 * 12 9 8 14 14 C 1.37880 * 119.99631 * 179.97438 * 12 9 8 15 15 N 1.31516 * 120.00242 * 0.02562 * 14 12 9 16 16 Si 1.86798 * 119.99882 * 179.97438 * 14 12 9 17 17 H 1.48499 * 109.47192 * 60.00408 * 16 14 12 18 18 H 1.48502 * 109.47261 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47496 * 300.00511 * 16 14 12 20 20 C 1.41018 * 117.77376 * 0.02562 * 4 3 2 21 21 C 1.45857 * 134.27783 * 179.97438 * 20 4 3 22 22 O 1.35949 * 126.20523 * 359.97438 * 21 20 4 23 23 N 1.30630 * 107.59904 * 180.02562 * 21 20 4 24 24 N 1.39826 * 110.03820 * 359.97438 * 23 21 20 25 25 C 1.46493 * 125.36407 * 180.02562 * 24 23 21 26 26 C 1.36953 * 109.26398 * 0.02562 * 24 23 21 27 27 N 1.31436 * 119.13438 * 180.02562 * 2 1 3 28 28 H 1.08995 * 109.47220 * 269.97448 * 1 2 3 29 29 H 1.09002 * 109.47278 * 29.97912 * 1 2 3 30 30 H 1.09009 * 109.46778 * 149.97658 * 1 2 3 31 31 H 1.08000 * 120.35055 * 0.02562 * 3 2 1 32 32 H 0.96998 * 119.99958 * 359.97438 * 7 5 4 33 33 H 1.09004 * 109.46662 * 299.99355 * 8 7 5 34 34 H 1.08992 * 109.47036 * 59.99920 * 8 7 5 35 35 H 1.08998 * 109.47096 * 60.00844 * 10 9 8 36 36 H 1.09005 * 109.47038 * 180.02562 * 10 9 8 37 37 H 1.08999 * 109.47244 * 300.00275 * 10 9 8 38 38 H 1.09004 * 109.47558 * 59.99439 * 11 9 8 39 39 H 1.08998 * 109.47404 * 179.97438 * 11 9 8 40 40 H 1.09007 * 109.46995 * 299.99552 * 11 9 8 41 41 H 0.96995 * 120.00002 * 180.02562 * 15 14 12 42 42 H 0.96704 * 114.00151 * 89.98940 * 22 21 20 43 43 H 1.08999 * 109.47348 * 269.98044 * 25 24 23 44 44 H 1.09001 * 109.47387 * 29.97850 * 25 24 23 45 45 H 1.09002 * 109.47178 * 149.98098 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1822 1.2116 0.0000 4 6 3.5757 1.2157 -0.0005 5 6 4.3362 2.4843 -0.0011 6 8 5.5515 2.4643 -0.0021 7 7 3.6817 3.6624 -0.0006 8 6 4.4350 4.9189 -0.0018 9 6 3.4600 6.0980 -0.0015 10 6 2.5783 6.0310 -1.2501 11 6 2.5801 6.0320 1.2484 12 6 4.2350 7.3905 -0.0020 13 1 5.3148 7.3727 -0.0021 14 6 3.5653 8.5958 -0.0025 15 7 2.2503 8.6175 -0.0019 16 14 4.5258 10.1979 -0.0024 17 1 5.3811 10.2623 -1.2147 18 1 3.5796 11.3424 -0.0023 19 1 5.3805 10.2627 1.2103 20 6 4.2364 -0.0301 -0.0016 21 6 5.6361 -0.4403 -0.0029 22 8 6.7153 0.3865 -0.0039 23 7 5.6649 -1.7463 -0.0041 24 7 4.3622 -2.2543 -0.0031 25 6 4.0062 -3.6753 -0.0034 26 6 3.4716 -1.2139 -0.0018 27 7 2.1469 -1.1481 -0.0005 28 1 -0.3633 -0.0005 1.0276 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3633 -0.8899 -0.5142 31 1 1.6337 2.1420 0.0004 32 1 2.7118 3.6784 -0.0002 33 1 5.0635 4.9665 0.8876 34 1 5.0615 4.9661 -0.8924 35 1 2.0178 5.0962 -1.2493 36 1 1.8840 6.8713 -1.2501 37 1 3.2052 6.0781 -2.1405 38 1 3.2083 6.0798 2.1380 39 1 1.8858 6.8723 1.2488 40 1 2.0196 5.0971 1.2492 41 1 1.7793 9.4653 -0.0025 42 1 7.0282 0.6258 0.8793 43 1 3.9166 -4.0272 -1.0311 44 1 4.7819 -4.2443 0.5091 45 1 3.0553 -3.8118 0.5116 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457993568.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:21 Heat of formation + Delta-G solvation = 30.313314 kcal Electronic energy + Delta-G solvation = -28723.179266 eV Core-core repulsion = 24743.070156 eV Total energy + Delta-G solvation = -3980.109110 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.83566 -39.44631 -38.54984 -37.10065 -36.37269 -33.64897 -33.23306 -32.07877 -31.87909 -30.71247 -27.78914 -26.53709 -25.95027 -25.77635 -25.22346 -23.70332 -22.42731 -21.54395 -20.05426 -18.97296 -18.35429 -17.61421 -17.18966 -16.99176 -16.10421 -15.83692 -15.15323 -14.91279 -14.83157 -14.68294 -14.56738 -14.24554 -14.09788 -13.47545 -13.09460 -13.00913 -12.98428 -12.80368 -12.73961 -12.39766 -12.22983 -12.14014 -11.75029 -11.44080 -11.23259 -10.88934 -10.76155 -10.61467 -10.51991 -10.40742 -10.26400 -10.07402 -9.68495 -9.52655 -9.27751 -9.03344 -8.84457 -8.54007 -8.40900 -8.34132 -6.05527 -4.15691 0.24771 0.92961 1.78653 2.05123 2.99899 3.28352 3.32806 3.34645 3.42705 3.44574 3.72562 4.03654 4.25079 4.36465 4.47066 4.60777 4.90128 4.93002 4.97528 5.17158 5.21471 5.22229 5.28950 5.35641 5.45378 5.65357 5.71329 5.86694 6.15229 6.19935 6.26606 6.45202 6.57330 6.69752 6.76345 6.87323 6.91886 6.96834 7.20385 7.30110 7.50808 7.56452 7.65503 7.65828 7.91020 7.96575 8.09539 8.33645 8.53146 8.84600 9.50366 10.95930 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019950 B = 0.002912 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.190681 B = 9611.627229 C =10810.590752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.200 3.800 3 C -0.187 4.187 4 C 0.014 3.986 5 C 0.538 3.462 6 O -0.516 6.516 7 N -0.704 5.704 8 C 0.132 3.868 9 C 0.057 3.943 10 C -0.132 4.132 11 C -0.132 4.132 12 C -0.507 4.507 13 H 0.057 0.943 14 C 0.067 3.933 15 N -0.886 5.886 16 Si 0.894 3.106 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.208 4.208 21 C 0.315 3.685 22 O -0.424 6.424 23 N -0.257 5.257 24 N -0.386 5.386 25 C 0.117 3.883 26 C 0.327 3.673 27 N -0.496 5.496 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.149 0.851 32 H 0.398 0.602 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.005 0.995 36 H 0.087 0.913 37 H 0.027 0.973 38 H 0.027 0.973 39 H 0.086 0.914 40 H 0.005 0.995 41 H 0.261 0.739 42 H 0.404 0.596 43 H 0.070 0.930 44 H 0.088 0.912 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.051 -19.953 1.835 20.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.051 3.949 3 C -0.209 4.209 4 C 0.000 4.000 5 C 0.322 3.678 6 O -0.392 6.392 7 N -0.356 5.356 8 C 0.010 3.990 9 C 0.056 3.944 10 C -0.190 4.190 11 C -0.189 4.189 12 C -0.546 4.546 13 H 0.076 0.924 14 C -0.134 4.134 15 N -0.524 5.524 16 Si 0.722 3.278 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.220 4.220 21 C 0.097 3.903 22 O -0.228 6.228 23 N -0.084 5.084 24 N -0.180 5.180 25 C -0.024 4.024 26 C 0.087 3.913 27 N -0.213 5.213 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.166 0.834 32 H 0.234 0.766 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.024 0.976 36 H 0.105 0.895 37 H 0.047 0.953 38 H 0.046 0.954 39 H 0.105 0.895 40 H 0.024 0.976 41 H 0.071 0.929 42 H 0.262 0.738 43 H 0.089 0.911 44 H 0.107 0.893 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.970 -21.727 1.232 21.963 hybrid contribution 0.108 2.303 0.430 2.346 sum -2.861 -19.423 1.663 19.703 Atomic orbital electron populations 1.20837 0.87476 1.04239 1.03827 1.21153 0.96854 0.86395 0.90457 1.22059 0.93157 0.99943 1.05775 1.20084 0.93180 0.92701 0.94034 1.18078 0.87636 0.83328 0.78798 1.90793 1.12581 1.87048 1.48810 1.46265 1.10839 1.06042 1.72433 1.21809 0.95115 0.81255 1.00845 1.18356 0.92032 0.91165 0.92863 1.21847 1.00161 0.99329 0.97634 1.21845 1.00149 0.99331 0.97600 1.20936 0.92843 0.89710 1.51098 0.92426 1.24869 0.94893 0.98945 0.94717 1.69782 1.06304 1.25936 1.50423 0.86630 0.79721 0.82785 0.78707 1.20260 1.21324 1.20277 1.20485 0.94383 0.93521 1.13576 1.20730 0.86195 0.86746 0.96611 1.84988 1.42476 1.61784 1.33509 1.76865 0.98484 1.10534 1.22523 1.47746 0.99675 1.05242 1.65366 1.21809 1.02170 0.75144 1.03286 1.18708 0.88732 0.86897 0.96926 1.66301 1.05952 1.30157 1.18913 0.89560 0.89624 0.90045 0.83367 0.76592 0.92337 0.92305 0.97567 0.89484 0.95334 0.95364 0.89492 0.97573 0.92907 0.73784 0.91142 0.89332 0.89013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.14 36.01 0.37 -0.40 16 2 C 0.20 2.23 6.77 -82.59 -0.56 1.67 16 3 C -0.19 -2.25 9.22 -39.00 -0.36 -2.61 16 4 C 0.01 0.20 5.93 -104.47 -0.62 -0.42 16 5 C 0.54 9.30 7.79 -12.30 -0.10 9.20 16 6 O -0.52 -10.12 13.66 -18.05 -0.25 -10.36 16 7 N -0.70 -12.03 4.92 -61.23 -0.30 -12.33 16 8 C 0.13 2.67 4.50 -4.04 -0.02 2.65 16 9 C 0.06 1.26 0.50 -155.66 -0.08 1.18 16 10 C -0.13 -2.86 8.08 37.16 0.30 -2.56 16 11 C -0.13 -2.82 8.08 37.15 0.30 -2.52 16 12 C -0.51 -12.91 8.01 -34.44 -0.28 -13.18 16 13 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 14 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 15 N -0.89 -22.99 9.35 55.43 0.52 -22.47 16 16 Si 0.89 20.34 29.54 -169.99 -5.02 15.32 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 20 C -0.21 -3.23 6.17 -104.78 -0.65 -3.88 16 21 C 0.32 4.89 8.51 -15.02 -0.13 4.76 16 22 O -0.42 -6.42 10.89 -42.95 -0.47 -6.89 16 23 N -0.26 -3.75 12.42 31.71 0.39 -3.36 16 24 N -0.39 -4.98 4.04 -67.20 -0.27 -5.25 16 25 C 0.12 0.94 11.44 59.84 0.68 1.62 16 26 C 0.33 4.63 7.97 -156.10 -1.24 3.38 16 27 N -0.50 -6.34 10.25 -8.60 -0.09 -6.43 16 28 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.49 8.07 -51.93 -0.42 0.07 16 30 H 0.08 0.54 8.14 -51.92 -0.42 0.12 16 31 H 0.15 1.47 6.53 -52.49 -0.34 1.13 16 32 H 0.40 6.04 4.31 -40.82 -0.18 5.86 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 36 H 0.09 2.09 6.07 -51.93 -0.32 1.78 16 37 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.09 2.08 6.07 -51.93 -0.32 1.76 16 40 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 41 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 42 H 0.40 4.49 8.98 45.56 0.41 4.90 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 367.73 15.07 5.54 5.54 Total: -1.00 -31.11 367.73 -7.63 -38.73 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -5.22 Total: 6.97 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: -2.47 Total: 0.53 kcal Atomic # 7 Polarization: -50.09 SS G_CDS: 0.25 Total: -49.84 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.71 Total: -17.26 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.11 -7.63 -38.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457993568.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.045 kcal (2) G-P(sol) polarization free energy of solvation -31.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds