Wall clock time and date at job start Tue Mar 31 2020 16:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38764 * 120.06800 * 2 1 4 4 N 1.39945 * 120.03573 * 0.02737 * 3 2 1 5 5 C 1.34776 * 119.99956 * 155.44264 * 4 3 2 6 6 O 1.21585 * 119.99905 * 354.37339 * 5 4 3 7 7 N 1.34775 * 119.99638 * 174.37902 * 5 4 3 8 8 C 1.46505 * 119.99468 * 179.72373 * 7 5 4 9 9 H 1.09001 * 109.47182 * 325.27283 * 8 7 5 10 10 C 1.52997 * 109.47033 * 85.27573 * 8 7 5 11 11 C 1.50709 * 109.46946 * 205.27525 * 8 7 5 12 12 H 1.08002 * 119.99784 * 359.97438 * 11 8 7 13 13 C 1.37873 * 119.99621 * 180.02562 * 11 8 7 14 14 N 1.31513 * 120.00545 * 359.97438 * 13 11 8 15 15 Si 1.86805 * 119.99554 * 179.97438 * 13 11 8 16 16 H 1.48500 * 109.46917 * 59.99618 * 15 13 11 17 17 H 1.48498 * 109.47076 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47013 * 299.99902 * 15 13 11 19 19 C 1.38890 * 119.92848 * 180.29756 * 3 2 1 20 20 C 1.38184 * 120.06876 * 359.47125 * 19 3 2 21 21 C 1.38144 * 120.13840 * 0.51137 * 20 19 3 22 22 C 1.38719 * 120.06785 * 180.02562 * 2 1 3 23 23 N 1.39949 * 120.03686 * 359.95261 * 22 2 1 24 24 C 1.47055 * 125.40704 * 270.00398 * 23 22 2 25 25 C 1.54106 * 103.85727 * 179.97438 * 24 23 22 26 26 N 1.47052 * 103.86323 * 0.02562 * 25 24 23 27 27 C 1.33945 * 125.40729 * 89.69529 * 23 22 2 28 28 O 1.21578 * 123.04509 * 0.02562 * 27 23 22 29 29 H 1.08993 * 109.46960 * 89.99775 * 1 2 3 30 30 H 1.08994 * 109.46822 * 210.00173 * 1 2 3 31 31 H 1.08998 * 109.46616 * 329.99866 * 1 2 3 32 32 H 0.96999 * 119.99801 * 335.43585 * 4 3 2 33 33 H 0.97000 * 120.00355 * 359.97438 * 7 5 4 34 34 H 1.08998 * 109.47306 * 299.99401 * 10 8 7 35 35 H 1.09001 * 109.47373 * 59.99827 * 10 8 7 36 36 H 1.09007 * 109.46804 * 179.97438 * 10 8 7 37 37 H 0.96993 * 119.99991 * 179.97438 * 14 13 11 38 38 H 1.07997 * 119.96708 * 179.72514 * 19 3 2 39 39 H 1.07998 * 119.93242 * 180.25035 * 20 19 3 40 40 H 1.08004 * 119.96190 * 179.74982 * 21 20 19 41 41 H 1.08995 * 110.55063 * 298.59456 * 24 23 22 42 42 H 1.08996 * 110.55092 * 61.40705 * 24 23 22 43 43 H 1.09003 * 110.54503 * 118.59772 * 25 24 23 44 44 H 1.08995 * 110.54781 * 241.40288 * 25 24 23 45 45 H 0.97004 * 125.40413 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2023 1.2009 0.0000 4 7 1.5048 2.4141 0.0006 5 6 2.0895 3.5274 0.4857 6 8 3.1816 3.4588 1.0157 7 7 1.4634 4.7165 0.3834 8 6 2.0963 5.9256 0.9161 9 1 2.6577 5.6754 1.8164 10 6 3.0465 6.5080 -0.1321 11 6 1.0352 6.9417 1.2520 12 1 -0.0064 6.7101 1.0849 13 6 1.3942 8.1673 1.7716 14 7 2.6625 8.4495 1.9746 15 14 0.0789 9.4270 2.1873 16 1 -0.8435 8.8621 3.2047 17 1 0.7203 10.6525 2.7274 18 1 -0.6857 9.7674 0.9607 19 6 3.5912 1.1975 -0.0063 20 6 4.2807 0.0000 -0.0014 21 6 3.5914 -1.1972 -0.0010 22 6 2.2021 -1.2005 -0.0005 23 7 1.5046 -2.4138 -0.0001 24 6 1.0807 -3.1524 1.1988 25 6 0.3654 -4.3947 0.6332 26 7 0.4627 -4.2244 -0.8242 27 6 1.1120 -3.0836 -1.0915 28 8 1.3289 -2.6937 -2.2225 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3632 0.8900 0.5139 32 1 0.6006 2.4538 -0.3483 33 1 0.5923 4.7712 -0.0397 34 1 3.8140 5.7732 -0.3750 35 1 2.4852 6.7582 -1.0323 36 1 3.5171 7.4079 0.2642 37 1 2.9151 9.3119 2.3398 38 1 4.1329 2.1318 -0.0107 39 1 5.3607 0.0000 -0.0022 40 1 4.1332 -2.1315 -0.0014 41 1 1.9459 -3.4461 1.7931 42 1 0.3921 -2.5528 1.7941 43 1 0.8755 -5.3056 0.9466 44 1 -0.6780 -4.4118 0.9480 45 1 0.1087 -4.8382 -1.4866 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000489844706.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:47:08 Heat of formation + Delta-G solvation = -3.310789 kcal Electronic energy + Delta-G solvation = -28274.777477 eV Core-core repulsion = 24293.210317 eV Total energy + Delta-G solvation = -3981.567160 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.55380 -40.25953 -38.49124 -36.55633 -35.39616 -34.49072 -34.03976 -32.47311 -31.80003 -29.77803 -29.02334 -28.11729 -26.78125 -25.27174 -23.73556 -23.23033 -22.19042 -21.10149 -20.37720 -19.71787 -18.31335 -18.12393 -17.33217 -16.92576 -16.27172 -15.74839 -15.69327 -15.18750 -15.03634 -14.65272 -14.49097 -14.39065 -14.08512 -13.95756 -13.62368 -13.32243 -13.30184 -12.79840 -12.72410 -12.52612 -12.41544 -12.07255 -11.74598 -11.55257 -11.38424 -11.12104 -11.00433 -10.78687 -10.46820 -10.35655 -10.25095 -10.15381 -9.62749 -9.37953 -9.08460 -9.00808 -8.59006 -8.55902 -8.11155 -7.67213 -6.14664 -4.24101 1.31231 1.43879 2.25533 2.89562 3.14996 3.24215 3.29761 3.31694 3.53883 3.61899 3.98118 4.02081 4.30486 4.46529 4.79162 4.83345 4.90533 4.94380 5.02141 5.17766 5.19122 5.26469 5.35452 5.50019 5.52694 5.55723 5.68938 5.74935 6.02157 6.35700 6.40443 6.54110 6.64643 6.72798 6.78824 6.87705 6.96052 7.09811 7.18840 7.22222 7.25176 7.42363 7.59494 7.80544 7.96315 8.12876 8.37596 8.68761 8.80531 9.18145 9.43956 10.91338 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024757 B = 0.002371 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.739194 B =11805.357050 C =12357.153165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.119 4.119 3 C 0.193 3.807 4 N -0.690 5.690 5 C 0.693 3.307 6 O -0.578 6.578 7 N -0.717 5.717 8 C 0.280 3.720 9 H 0.050 0.950 10 C -0.148 4.148 11 C -0.535 4.535 12 H 0.060 0.940 13 C 0.067 3.933 14 N -0.883 5.883 15 Si 0.903 3.097 16 H -0.276 1.276 17 H -0.285 1.285 18 H -0.276 1.276 19 C -0.121 4.121 20 C -0.095 4.095 21 C -0.135 4.135 22 C 0.177 3.823 23 N -0.584 5.584 24 C 0.092 3.908 25 C 0.094 3.906 26 N -0.743 5.743 27 C 0.702 3.298 28 O -0.574 6.574 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.403 0.597 33 H 0.387 0.613 34 H 0.016 0.984 35 H 0.026 0.974 36 H 0.091 0.909 37 H 0.265 0.735 38 H 0.156 0.844 39 H 0.129 0.871 40 H 0.120 0.880 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.176 -25.036 -1.713 25.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.124 4.124 3 C 0.095 3.905 4 N -0.337 5.337 5 C 0.393 3.607 6 O -0.456 6.456 7 N -0.368 5.368 8 C 0.179 3.821 9 H 0.068 0.932 10 C -0.207 4.207 11 C -0.574 4.574 12 H 0.079 0.921 13 C -0.137 4.137 14 N -0.520 5.520 15 Si 0.730 3.270 16 H -0.202 1.202 17 H -0.211 1.211 18 H -0.202 1.202 19 C -0.141 4.141 20 C -0.114 4.114 21 C -0.155 4.155 22 C 0.087 3.913 23 N -0.319 5.319 24 C -0.031 4.031 25 C -0.032 4.032 26 N -0.406 5.406 27 C 0.403 3.597 28 O -0.450 6.450 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.238 0.762 33 H 0.219 0.781 34 H 0.035 0.965 35 H 0.045 0.955 36 H 0.110 0.890 37 H 0.075 0.925 38 H 0.173 0.827 39 H 0.147 0.853 40 H 0.138 0.862 41 H 0.104 0.896 42 H 0.103 0.897 43 H 0.102 0.898 44 H 0.101 0.899 45 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -3.880 -24.429 -1.700 24.794 hybrid contribution -1.786 0.363 -0.237 1.838 sum -5.666 -24.066 -1.937 24.800 Atomic orbital electron populations 1.20597 0.91020 1.02499 1.02249 1.19632 0.96136 0.90987 1.05681 1.17191 0.91263 0.83763 0.98286 1.42900 1.18553 1.06770 1.65451 1.16152 0.84663 0.80410 0.79458 1.90837 1.20494 1.85083 1.49206 1.45908 1.22407 1.06601 1.61910 1.18701 0.92090 0.78498 0.92843 0.93185 1.22107 0.98378 1.01791 0.98424 1.21165 0.92783 0.99351 1.44087 0.92136 1.24875 0.95656 0.98040 0.95086 1.69888 1.15359 1.23135 1.43601 0.86488 0.81349 0.80399 0.78729 1.20201 1.21099 1.20161 1.21664 0.92630 1.00229 0.99584 1.20902 0.99945 0.91220 0.99363 1.21124 0.92665 0.98539 1.03196 1.16381 0.89281 0.81677 1.03998 1.44097 1.59623 1.21962 1.06204 1.22494 0.99944 0.91836 0.88792 1.22360 1.01605 0.98305 0.80881 1.45053 1.62610 1.24829 1.08102 1.15860 0.78670 0.80729 0.84470 1.90992 1.62017 1.71241 1.20795 0.91264 0.91745 0.91524 0.76198 0.78126 0.96522 0.95476 0.89049 0.92452 0.82699 0.85321 0.86226 0.89594 0.89693 0.89828 0.89851 0.72850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 9.20 36.01 0.33 -0.87 16 2 C -0.12 -1.65 5.91 -104.25 -0.62 -2.27 16 3 C 0.19 3.04 6.41 -83.72 -0.54 2.50 16 4 N -0.69 -10.87 4.99 -14.24 -0.07 -10.94 16 5 C 0.69 13.86 8.33 -86.92 -0.72 13.14 16 6 O -0.58 -13.55 13.16 5.29 0.07 -13.48 16 7 N -0.72 -14.70 5.07 -59.81 -0.30 -15.00 16 8 C 0.28 7.03 2.56 -69.08 -0.18 6.85 16 9 H 0.05 1.45 7.57 -51.93 -0.39 1.05 16 10 C -0.15 -3.66 9.26 37.16 0.34 -3.31 16 11 C -0.54 -13.97 8.73 -34.44 -0.30 -14.27 16 12 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 13 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 14 N -0.88 -24.59 11.32 55.43 0.63 -23.96 16 15 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 16 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 17 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 19 C -0.12 -1.97 8.71 -39.36 -0.34 -2.31 16 20 C -0.09 -1.29 10.03 -39.64 -0.40 -1.69 16 21 C -0.13 -1.74 9.96 -39.36 -0.39 -2.13 16 22 C 0.18 2.35 5.41 -83.72 -0.45 1.89 16 23 N -0.58 -6.38 1.99 -118.27 -0.24 -6.62 16 24 C 0.09 0.58 7.36 -3.16 -0.02 0.56 16 25 C 0.09 0.39 8.06 -3.16 -0.03 0.36 16 26 N -0.74 -5.58 6.37 -64.70 -0.41 -5.99 16 27 C 0.70 8.66 8.57 -88.40 -0.76 7.90 16 28 O -0.57 -9.87 17.65 5.30 0.09 -9.77 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.64 6.69 -51.93 -0.35 0.30 16 31 H 0.07 0.70 6.98 -51.93 -0.36 0.33 16 32 H 0.40 5.11 7.41 -40.82 -0.30 4.81 16 33 H 0.39 6.77 8.56 -40.82 -0.35 6.42 16 34 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.09 2.44 6.07 -51.92 -0.32 2.13 16 37 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 38 H 0.16 2.88 5.78 -52.49 -0.30 2.58 16 39 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 40 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 41 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.08 0.46 7.61 -51.93 -0.40 0.07 16 43 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 44 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 45 H 0.43 2.44 8.96 -40.82 -0.37 2.08 16 LS Contribution 371.88 15.07 5.60 5.60 Total: -1.00 -34.86 371.88 -9.87 -44.73 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -6.06 Total: 11.98 kcal Atomic # 6 Polarization: 12.21 SS G_CDS: -4.17 Total: 8.05 kcal Atomic # 7 Polarization: -62.11 SS G_CDS: -0.39 Total: -62.50 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: 0.16 Total: -23.25 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.86 -9.87 -44.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489844706.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.422 kcal (2) G-P(sol) polarization free energy of solvation -34.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds