Wall clock time and date at job start Tue Mar 31 2020 16:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38764 * 120.06800 * 2 1 4 4 N 1.39945 * 120.03573 * 0.02737 * 3 2 1 5 5 C 1.34776 * 119.99956 * 155.44264 * 4 3 2 6 6 O 1.21585 * 119.99905 * 354.37339 * 5 4 3 7 7 N 1.34775 * 119.99638 * 174.37902 * 5 4 3 8 8 C 1.46505 * 119.99468 * 179.72373 * 7 5 4 9 9 H 1.09001 * 109.47182 * 325.27283 * 8 7 5 10 10 C 1.52997 * 109.47033 * 85.27573 * 8 7 5 11 11 C 1.50709 * 109.46946 * 205.27525 * 8 7 5 12 12 H 1.08002 * 119.99784 * 359.97438 * 11 8 7 13 13 C 1.37873 * 119.99621 * 180.02562 * 11 8 7 14 14 N 1.31513 * 120.00545 * 359.97438 * 13 11 8 15 15 Si 1.86805 * 119.99554 * 179.97438 * 13 11 8 16 16 H 1.48500 * 109.46917 * 59.99618 * 15 13 11 17 17 H 1.48498 * 109.47076 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47013 * 299.99902 * 15 13 11 19 19 C 1.38890 * 119.92848 * 180.29756 * 3 2 1 20 20 C 1.38184 * 120.06876 * 359.47125 * 19 3 2 21 21 C 1.38144 * 120.13840 * 0.51137 * 20 19 3 22 22 C 1.38719 * 120.06785 * 180.02562 * 2 1 3 23 23 N 1.39949 * 120.03686 * 359.95261 * 22 2 1 24 24 C 1.47055 * 125.40704 * 270.00398 * 23 22 2 25 25 C 1.54106 * 103.85727 * 179.97438 * 24 23 22 26 26 N 1.47052 * 103.86323 * 0.02562 * 25 24 23 27 27 C 1.33945 * 125.40729 * 89.69529 * 23 22 2 28 28 O 1.21578 * 123.04509 * 0.02562 * 27 23 22 29 29 H 1.08993 * 109.46960 * 89.99775 * 1 2 3 30 30 H 1.08994 * 109.46822 * 210.00173 * 1 2 3 31 31 H 1.08998 * 109.46616 * 329.99866 * 1 2 3 32 32 H 0.96999 * 119.99801 * 335.43585 * 4 3 2 33 33 H 0.97000 * 120.00355 * 359.97438 * 7 5 4 34 34 H 1.08998 * 109.47306 * 299.99401 * 10 8 7 35 35 H 1.09001 * 109.47373 * 59.99827 * 10 8 7 36 36 H 1.09007 * 109.46804 * 179.97438 * 10 8 7 37 37 H 0.96993 * 119.99991 * 179.97438 * 14 13 11 38 38 H 1.07997 * 119.96708 * 179.72514 * 19 3 2 39 39 H 1.07998 * 119.93242 * 180.25035 * 20 19 3 40 40 H 1.08004 * 119.96190 * 179.74982 * 21 20 19 41 41 H 1.08995 * 110.55063 * 298.59456 * 24 23 22 42 42 H 1.08996 * 110.55092 * 61.40705 * 24 23 22 43 43 H 1.09003 * 110.54503 * 118.59772 * 25 24 23 44 44 H 1.08995 * 110.54781 * 241.40288 * 25 24 23 45 45 H 0.97004 * 125.40413 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2023 1.2009 0.0000 4 7 1.5048 2.4141 0.0006 5 6 2.0895 3.5274 0.4857 6 8 3.1816 3.4588 1.0157 7 7 1.4634 4.7165 0.3834 8 6 2.0963 5.9256 0.9161 9 1 2.6577 5.6754 1.8164 10 6 3.0465 6.5080 -0.1321 11 6 1.0352 6.9417 1.2520 12 1 -0.0064 6.7101 1.0849 13 6 1.3942 8.1673 1.7716 14 7 2.6625 8.4495 1.9746 15 14 0.0789 9.4270 2.1873 16 1 -0.8435 8.8621 3.2047 17 1 0.7203 10.6525 2.7274 18 1 -0.6857 9.7674 0.9607 19 6 3.5912 1.1975 -0.0063 20 6 4.2807 0.0000 -0.0014 21 6 3.5914 -1.1972 -0.0010 22 6 2.2021 -1.2005 -0.0005 23 7 1.5046 -2.4138 -0.0001 24 6 1.0807 -3.1524 1.1988 25 6 0.3654 -4.3947 0.6332 26 7 0.4627 -4.2244 -0.8242 27 6 1.1120 -3.0836 -1.0915 28 8 1.3289 -2.6937 -2.2225 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3632 0.8900 0.5139 32 1 0.6006 2.4538 -0.3483 33 1 0.5923 4.7712 -0.0397 34 1 3.8140 5.7732 -0.3750 35 1 2.4852 6.7582 -1.0323 36 1 3.5171 7.4079 0.2642 37 1 2.9151 9.3119 2.3398 38 1 4.1329 2.1318 -0.0107 39 1 5.3607 0.0000 -0.0022 40 1 4.1332 -2.1315 -0.0014 41 1 1.9459 -3.4461 1.7931 42 1 0.3921 -2.5528 1.7941 43 1 0.8755 -5.3056 0.9466 44 1 -0.6780 -4.4118 0.9480 45 1 0.1087 -4.8382 -1.4866 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000489844706.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:47:08 Heat of formation + Delta-G solvation = -28.048001 kcal Electronic energy + Delta-G solvation = -28275.850163 eV Core-core repulsion = 24293.210317 eV Total energy + Delta-G solvation = -3982.639846 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.39774 -41.60660 -39.78039 -37.48863 -36.98700 -35.97976 -35.04277 -34.30729 -32.91050 -31.11022 -30.07226 -29.30327 -27.80235 -27.32510 -24.82824 -23.83822 -23.53801 -22.31314 -21.90884 -21.09599 -19.80055 -19.09801 -18.45322 -17.86545 -17.58559 -17.14209 -16.92753 -16.57088 -16.31724 -16.07143 -15.59119 -15.45150 -15.20929 -15.07142 -14.78761 -14.59148 -14.37881 -14.33040 -13.75616 -13.55866 -13.27399 -13.20293 -13.13765 -12.96078 -12.85389 -12.72436 -12.59449 -12.38889 -12.26347 -12.13890 -11.60449 -11.41307 -11.11452 -11.00980 -10.58378 -10.44485 -9.86755 -9.65834 -9.65585 -8.95942 -8.16890 -6.34228 0.20848 0.30282 1.43437 1.47305 1.48314 1.56041 1.76446 2.03440 2.11559 2.42646 2.74018 3.03236 3.13656 3.38466 3.56731 3.82057 3.95229 4.09147 4.17727 4.37112 4.39772 4.48211 4.52481 4.65067 4.68468 4.72308 4.75138 4.92132 4.94090 4.96184 5.09545 5.11781 5.23461 5.27319 5.39738 5.46431 5.50465 5.60261 5.66593 5.73593 5.85293 6.05354 6.09262 6.21017 6.26951 6.45911 6.72787 7.17308 7.34001 7.54112 7.62755 8.89406 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024757 B = 0.002371 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.739194 B =11805.357050 C =12357.153165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.119 4.119 3 C 0.169 3.831 4 N -0.672 5.672 5 C 0.694 3.306 6 O -0.616 6.616 7 N -0.713 5.713 8 C 0.290 3.710 9 H 0.002 0.998 10 C -0.135 4.135 11 C -0.548 4.548 12 H 0.074 0.926 13 C 0.015 3.985 14 N -0.916 5.916 15 Si 0.973 3.027 16 H -0.270 1.270 17 H -0.287 1.287 18 H -0.265 1.265 19 C -0.146 4.146 20 C -0.094 4.094 21 C -0.131 4.131 22 C 0.173 3.827 23 N -0.587 5.587 24 C 0.082 3.918 25 C 0.098 3.902 26 N -0.730 5.730 27 C 0.693 3.307 28 O -0.634 6.634 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.418 0.582 33 H 0.403 0.597 34 H 0.012 0.988 35 H 0.039 0.961 36 H 0.068 0.932 37 H 0.266 0.734 38 H 0.125 0.875 39 H 0.149 0.851 40 H 0.141 0.859 41 H 0.101 0.899 42 H 0.096 0.904 43 H 0.112 0.888 44 H 0.110 0.890 45 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.581 -27.328 -1.207 28.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.124 4.124 3 C 0.072 3.928 4 N -0.319 5.319 5 C 0.394 3.606 6 O -0.497 6.497 7 N -0.365 5.365 8 C 0.186 3.814 9 H 0.020 0.980 10 C -0.194 4.194 11 C -0.586 4.586 12 H 0.092 0.908 13 C -0.185 4.185 14 N -0.555 5.555 15 Si 0.798 3.202 16 H -0.195 1.195 17 H -0.212 1.212 18 H -0.189 1.189 19 C -0.167 4.167 20 C -0.113 4.113 21 C -0.152 4.152 22 C 0.082 3.918 23 N -0.321 5.321 24 C -0.038 4.038 25 C -0.026 4.026 26 N -0.392 5.392 27 C 0.394 3.606 28 O -0.515 6.515 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.257 0.743 33 H 0.238 0.762 34 H 0.031 0.969 35 H 0.058 0.942 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.143 0.857 39 H 0.167 0.833 40 H 0.159 0.841 41 H 0.119 0.881 42 H 0.114 0.886 43 H 0.130 0.870 44 H 0.128 0.872 45 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -6.358 -26.820 -1.183 27.589 hybrid contribution -0.994 0.890 -0.367 1.384 sum -7.352 -25.930 -1.550 26.997 Atomic orbital electron populations 1.20621 0.89140 1.03682 1.02507 1.19865 0.97531 0.90353 1.04638 1.17355 0.91282 0.84127 0.99986 1.42526 1.19014 1.05714 1.64692 1.16205 0.84148 0.81048 0.79178 1.90823 1.22282 1.85771 1.50790 1.45499 1.23046 1.05784 1.62211 1.18271 0.91939 0.79920 0.91273 0.97968 1.21933 0.98259 1.00607 0.98609 1.21496 0.93471 0.99600 1.44014 0.90774 1.25787 0.97716 1.00153 0.94862 1.70041 1.17442 1.23631 1.44339 0.85379 0.78527 0.77496 0.78810 1.19545 1.21229 1.18948 1.21551 0.93237 1.00078 1.01792 1.21096 1.01023 0.90597 0.98566 1.21389 0.92904 0.98955 1.01903 1.16578 0.89747 0.82670 1.02769 1.44134 1.59133 1.21222 1.07588 1.22882 1.01109 0.92362 0.87490 1.22663 1.03404 0.98269 0.78234 1.45042 1.60889 1.23132 1.10127 1.16157 0.78924 0.81756 0.83795 1.90946 1.64423 1.72948 1.23153 0.91340 0.90120 0.90774 0.74344 0.76183 0.96861 0.94237 0.91285 0.92492 0.85694 0.83347 0.84097 0.88113 0.88560 0.87032 0.87174 0.71854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.13 9.20 71.24 0.66 -1.47 16 2 C -0.12 -3.19 5.91 -19.62 -0.12 -3.31 16 3 C 0.17 5.40 6.41 38.13 0.24 5.65 16 4 N -0.67 -21.34 4.99 -317.24 -1.58 -22.92 16 5 C 0.69 28.60 8.33 179.06 1.49 30.09 16 6 O -0.62 -30.42 13.16 -3.98 -0.05 -30.47 16 7 N -0.71 -29.66 5.07 -461.40 -2.34 -32.00 16 8 C 0.29 14.96 2.56 44.25 0.11 15.07 16 9 H 0.00 0.15 7.57 -2.39 -0.02 0.13 16 10 C -0.14 -6.88 9.26 71.98 0.67 -6.22 16 11 C -0.55 -28.65 8.73 25.60 0.22 -28.43 16 12 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 13 C 0.02 0.80 5.30 84.65 0.45 1.25 16 14 N -0.92 -52.22 11.32 21.45 0.24 -51.97 16 15 Si 0.97 41.55 29.54 68.60 2.03 43.58 16 16 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 17 H -0.29 -12.20 7.11 99.48 0.71 -11.49 16 18 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 19 C -0.15 -4.95 8.71 22.41 0.20 -4.76 16 20 C -0.09 -2.55 10.03 22.23 0.22 -2.33 16 21 C -0.13 -3.23 9.96 22.41 0.22 -3.01 16 22 C 0.17 4.37 5.41 38.13 0.21 4.58 16 23 N -0.59 -11.50 1.99 -646.83 -1.29 -12.79 16 24 C 0.08 0.74 7.36 86.65 0.64 1.38 16 25 C 0.10 0.38 8.06 86.65 0.70 1.08 16 26 N -0.73 -8.85 6.37 -477.35 -3.04 -11.89 16 27 C 0.69 15.90 8.57 179.57 1.54 17.44 16 28 O -0.63 -21.60 17.65 -3.96 -0.07 -21.67 16 29 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.08 1.39 6.69 -2.39 -0.02 1.38 16 31 H 0.07 1.41 6.98 -2.39 -0.02 1.39 16 32 H 0.42 10.33 7.41 -92.71 -0.69 9.65 16 33 H 0.40 13.91 8.56 -92.71 -0.79 13.11 16 34 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.07 3.83 6.07 -2.38 -0.01 3.82 16 37 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 38 H 0.13 5.01 5.78 -2.91 -0.02 5.00 16 39 H 0.15 3.30 8.06 -2.91 -0.02 3.27 16 40 H 0.14 2.83 8.06 -2.91 -0.02 2.80 16 41 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.10 0.67 7.61 -2.39 -0.02 0.66 16 43 H 0.11 -0.09 8.14 -2.39 -0.02 -0.11 16 44 H 0.11 -0.06 8.14 -2.39 -0.02 -0.08 16 45 H 0.44 3.86 8.96 -92.71 -0.83 3.03 16 Total: -1.00 -79.55 371.88 0.10 -79.45 By element: Atomic # 1 Polarization: 34.92 SS G_CDS: -1.25 Total: 33.67 kcal Atomic # 6 Polarization: 19.57 SS G_CDS: 7.45 Total: 27.02 kcal Atomic # 7 Polarization: -123.56 SS G_CDS: -8.01 Total: -131.57 kcal Atomic # 8 Polarization: -52.02 SS G_CDS: -0.12 Total: -52.14 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Total: -79.55 0.10 -79.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489844706.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.401 kcal (2) G-P(sol) polarization free energy of solvation -79.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds