Wall clock time and date at job start Tue Mar 31 2020 16:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38768 * 120.06712 * 2 1 4 4 N 1.39942 * 120.03302 * 359.95313 * 3 2 1 5 5 C 1.34778 * 119.99960 * 145.53811 * 4 3 2 6 6 O 1.21591 * 119.99648 * 4.50362 * 5 4 3 7 7 N 1.34774 * 120.00119 * 184.51116 * 5 4 3 8 8 C 1.46504 * 119.99808 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.47128 * 179.97438 * 8 7 5 10 10 C 1.50695 * 109.47342 * 179.97438 * 9 8 7 11 11 H 1.08005 * 120.00025 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00259 * 179.97438 * 10 9 8 13 13 N 1.31518 * 119.99813 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00114 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47155 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47351 * 120.00099 * 14 12 10 17 17 H 1.48506 * 109.46885 * 239.99984 * 14 12 10 18 18 C 1.38891 * 119.92752 * 180.23310 * 3 2 1 19 19 C 1.38174 * 120.07147 * 359.48892 * 18 3 2 20 20 C 1.38140 * 120.13879 * 0.51200 * 19 18 3 21 21 C 1.38723 * 120.07111 * 179.97438 * 2 1 3 22 22 N 1.39935 * 120.03360 * 359.97438 * 21 2 1 23 23 C 1.47056 * 125.40929 * 270.00131 * 22 21 2 24 24 C 1.54105 * 103.86158 * 180.02562 * 23 22 21 25 25 N 1.47054 * 103.86510 * 0.02562 * 24 23 22 26 26 C 1.33947 * 109.17467 * 359.73339 * 25 24 23 27 27 O 1.21587 * 123.04067 * 180.25935 * 26 25 24 28 28 H 1.09004 * 109.46878 * 89.99881 * 1 2 3 29 29 H 1.09000 * 109.46810 * 209.99730 * 1 2 3 30 30 H 1.08989 * 109.47510 * 330.00075 * 1 2 3 31 31 H 0.96998 * 120.00285 * 325.26126 * 4 3 2 32 32 H 0.97001 * 120.00291 * 359.97438 * 7 5 4 33 33 H 1.09000 * 109.47154 * 299.99926 * 8 7 5 34 34 H 1.08998 * 109.47286 * 59.99711 * 8 7 5 35 35 H 1.09010 * 109.46910 * 300.00004 * 9 8 7 36 36 H 1.08998 * 109.47214 * 59.99739 * 9 8 7 37 37 H 0.97000 * 119.99693 * 180.02562 * 13 12 10 38 38 H 1.08009 * 119.96261 * 179.74873 * 18 3 2 39 39 H 1.08003 * 119.93534 * 180.22899 * 19 18 3 40 40 H 1.08005 * 119.96786 * 179.72126 * 20 19 18 41 41 H 1.09000 * 110.55028 * 298.59305 * 23 22 21 42 42 H 1.08991 * 110.55115 * 61.40844 * 23 22 21 43 43 H 1.09005 * 110.54796 * 118.59237 * 24 23 22 44 44 H 1.09001 * 110.55248 * 241.39921 * 24 23 22 45 45 H 0.96996 * 125.41368 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2023 1.2010 0.0000 4 7 1.5047 2.4141 -0.0010 5 6 2.0026 3.4783 0.6594 6 8 3.0959 3.4093 1.1869 7 7 1.2885 4.6188 0.7352 8 6 1.8296 5.7754 1.4535 9 6 0.8282 6.9303 1.3883 10 6 1.3844 8.1198 2.1278 11 1 2.3553 8.0583 2.5969 12 6 0.6544 9.2869 2.2045 13 7 -0.5277 9.3619 1.6328 14 14 1.3441 10.7615 3.1205 15 1 2.6811 10.4218 3.6701 16 1 1.4693 11.9098 2.1872 17 1 0.4300 11.1252 4.2329 18 6 3.5912 1.1976 -0.0049 19 6 4.2806 0.0002 0.0009 20 6 3.5915 -1.1970 0.0009 21 6 2.2021 -1.2005 0.0005 22 7 1.5047 -2.4137 0.0016 23 6 1.0804 -3.1515 1.2008 24 6 0.3664 -4.3949 0.6360 25 7 0.4647 -4.2259 -0.8215 26 6 1.1136 -3.0852 -1.0894 27 8 1.3312 -2.6962 -2.2207 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 0.6648 2.4903 -0.4803 32 1 0.4164 4.6740 0.3141 33 1 2.0068 5.5060 2.4947 34 1 2.7684 6.0826 0.9929 35 1 0.6514 7.1996 0.3469 36 1 -0.1109 6.6234 1.8487 37 1 -1.0411 10.1832 1.6864 38 1 4.1329 2.1320 -0.0090 39 1 5.3607 0.0001 0.0008 40 1 4.1332 -2.1314 0.0009 41 1 1.9455 -3.4448 1.7956 42 1 0.3917 -2.5516 1.7955 43 1 0.8769 -5.3052 0.9504 44 1 -0.6772 -4.4125 0.9500 45 1 0.1116 -4.8405 -1.4837 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000489891077.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:46:55 Heat of formation + Delta-G solvation = -11.556055 kcal Electronic energy + Delta-G solvation = -27644.823016 eV Core-core repulsion = 23662.898315 eV Total energy + Delta-G solvation = -3981.924702 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.65590 -40.47463 -38.72217 -36.64009 -35.45186 -34.69333 -34.17043 -32.88904 -32.01957 -30.09143 -29.37253 -28.53312 -26.96399 -24.87317 -23.73568 -23.27794 -21.99339 -21.19184 -20.89348 -20.05126 -18.38374 -18.25586 -17.31365 -17.03172 -16.39910 -16.08479 -15.85326 -15.52945 -15.02205 -14.88629 -14.52693 -14.48286 -14.40124 -14.09523 -13.86804 -13.57860 -13.47530 -13.21920 -12.88610 -12.80041 -12.63626 -12.31474 -12.13526 -11.70271 -11.56046 -11.22317 -11.08590 -10.64175 -10.57048 -10.45190 -10.24805 -9.91850 -9.70502 -9.61042 -9.28531 -9.10681 -8.73266 -8.65311 -8.42890 -8.01364 -6.11866 -4.14617 1.14682 1.23518 2.15580 2.77881 2.88069 3.27113 3.28955 3.34958 3.40143 3.49895 3.71351 3.91826 4.34813 4.39411 4.51235 4.68842 4.74972 4.82885 4.93255 5.02678 5.18445 5.24727 5.25513 5.34288 5.40922 5.43692 5.51880 5.57907 5.90482 6.12786 6.17887 6.32487 6.34320 6.37774 6.44178 6.62233 6.70336 6.73767 6.86329 7.05678 7.08621 7.10205 7.51616 7.58511 7.86907 8.15781 8.28417 8.28997 8.77237 8.91847 9.50416 10.99791 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027225 B = 0.001985 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.225255 B =14105.189279 C =14556.658322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.107 4.107 3 C 0.181 3.819 4 N -0.690 5.690 5 C 0.698 3.302 6 O -0.579 6.579 7 N -0.731 5.731 8 C 0.139 3.861 9 C 0.012 3.988 10 C -0.520 4.520 11 H 0.061 0.939 12 C 0.058 3.942 13 N -0.894 5.894 14 Si 0.897 3.103 15 H -0.271 1.271 16 H -0.283 1.283 17 H -0.283 1.283 18 C -0.108 4.108 19 C -0.099 4.099 20 C -0.125 4.125 21 C 0.175 3.825 22 N -0.585 5.585 23 C 0.092 3.908 24 C 0.094 3.906 25 N -0.742 5.742 26 C 0.702 3.298 27 O -0.574 6.574 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.406 0.594 32 H 0.395 0.605 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.023 0.977 36 H 0.023 0.977 37 H 0.262 0.738 38 H 0.148 0.852 39 H 0.130 0.870 40 H 0.122 0.878 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.238 -29.747 -2.163 29.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.112 4.112 3 C 0.085 3.915 4 N -0.337 5.337 5 C 0.398 3.602 6 O -0.456 6.456 7 N -0.384 5.384 8 C 0.016 3.984 9 C -0.025 4.025 10 C -0.559 4.559 11 H 0.079 0.921 12 C -0.144 4.144 13 N -0.533 5.533 14 Si 0.725 3.275 15 H -0.195 1.195 16 H -0.209 1.209 17 H -0.209 1.209 18 C -0.129 4.129 19 C -0.118 4.118 20 C -0.146 4.146 21 C 0.084 3.916 22 N -0.320 5.320 23 C -0.031 4.031 24 C -0.032 4.032 25 N -0.405 5.405 26 C 0.403 3.597 27 O -0.450 6.450 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.241 0.759 32 H 0.229 0.771 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.041 0.959 36 H 0.041 0.959 37 H 0.071 0.929 38 H 0.166 0.834 39 H 0.148 0.852 40 H 0.140 0.860 41 H 0.104 0.896 42 H 0.103 0.897 43 H 0.102 0.898 44 H 0.102 0.898 45 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 1.245 -29.230 -2.217 29.341 hybrid contribution -0.838 0.548 -0.060 1.003 sum 0.407 -28.683 -2.277 28.776 Atomic orbital electron populations 1.20629 0.90799 1.02717 1.02420 1.19772 0.96339 0.91036 1.04044 1.17113 0.91026 0.83612 0.99776 1.42692 1.26683 1.09342 1.55016 1.16043 0.84519 0.80210 0.79392 1.90889 1.20192 1.82694 1.51874 1.45586 1.21820 1.12472 1.58549 1.21675 0.98406 0.83468 0.94802 1.19341 0.93982 0.91191 0.98023 1.21072 1.03964 0.96705 1.34178 0.92116 1.25004 0.94860 0.98911 0.95587 1.69965 1.11744 1.27460 1.44115 0.86446 0.79211 0.82345 0.79506 1.19549 1.20933 1.20948 1.21504 0.92630 0.99818 0.98902 1.20901 1.00042 0.91206 0.99680 1.21187 0.92721 0.98639 1.02041 1.16405 0.89299 0.81816 1.04046 1.44095 1.59711 1.21901 1.06307 1.22502 0.99969 0.91870 0.88714 1.22366 1.01676 0.98275 0.80845 1.45049 1.62548 1.24755 1.08133 1.15862 0.78673 0.80751 0.84434 1.90998 1.61983 1.71296 1.20739 0.91091 0.91644 0.91342 0.75871 0.77135 0.92494 0.92474 0.95886 0.95917 0.92885 0.83431 0.85184 0.86017 0.89584 0.89655 0.89774 0.89782 0.72780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 9.23 36.01 0.33 -0.75 16 2 C -0.11 -1.31 5.91 -104.25 -0.62 -1.93 16 3 C 0.18 2.49 6.28 -83.72 -0.53 1.96 16 4 N -0.69 -9.20 4.75 -14.24 -0.07 -9.27 16 5 C 0.70 11.82 8.41 -86.92 -0.73 11.09 16 6 O -0.58 -11.69 13.75 5.29 0.07 -11.62 16 7 N -0.73 -12.40 5.56 -65.22 -0.36 -12.76 16 8 C 0.14 2.88 5.61 -4.04 -0.02 2.86 16 9 C 0.01 0.29 5.09 -27.88 -0.14 0.15 16 10 C -0.52 -14.24 9.11 -34.44 -0.31 -14.55 16 11 H 0.06 1.63 7.74 -52.48 -0.41 1.23 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 13 N -0.89 -25.87 13.29 55.43 0.74 -25.13 16 14 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 15 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 C -0.11 -1.52 8.69 -39.36 -0.34 -1.86 16 19 C -0.10 -1.16 10.03 -39.64 -0.40 -1.56 16 20 C -0.13 -1.42 9.96 -39.36 -0.39 -1.81 16 21 C 0.17 2.07 5.41 -83.72 -0.45 1.61 16 22 N -0.59 -5.73 1.99 -118.27 -0.24 -5.96 16 23 C 0.09 0.49 7.36 -3.16 -0.02 0.47 16 24 C 0.09 0.31 8.06 -3.16 -0.03 0.29 16 25 N -0.74 -4.95 6.37 -64.70 -0.41 -5.36 16 26 C 0.70 7.96 8.57 -88.40 -0.76 7.20 16 27 O -0.57 -9.25 17.65 5.29 0.09 -9.16 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.59 6.68 -51.93 -0.35 0.24 16 30 H 0.07 0.64 7.17 -51.94 -0.37 0.27 16 31 H 0.41 4.27 7.87 -40.82 -0.32 3.94 16 32 H 0.40 5.70 8.49 -40.82 -0.35 5.36 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.02 0.58 8.14 -51.92 -0.42 0.16 16 36 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 38 H 0.15 2.33 6.19 -52.48 -0.32 2.00 16 39 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 40 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 41 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.09 0.39 7.61 -51.93 -0.39 -0.01 16 43 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 44 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 45 H 0.43 2.13 8.96 -40.82 -0.37 1.76 16 LS Contribution 377.70 15.07 5.69 5.69 Total: -1.00 -36.12 377.70 -10.25 -46.38 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -6.24 Total: 6.34 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: -4.51 Total: 4.68 kcal Atomic # 7 Polarization: -58.15 SS G_CDS: -0.34 Total: -58.49 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: 0.17 Total: -20.78 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.12 -10.25 -46.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489891077.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.822 kcal (2) G-P(sol) polarization free energy of solvation -36.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds