Wall clock time and date at job start Tue Mar 31 2020 16:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38768 * 120.06712 * 2 1 4 4 N 1.39942 * 120.03302 * 359.95313 * 3 2 1 5 5 C 1.34778 * 119.99960 * 145.53811 * 4 3 2 6 6 O 1.21591 * 119.99648 * 4.50362 * 5 4 3 7 7 N 1.34774 * 120.00119 * 184.51116 * 5 4 3 8 8 C 1.46504 * 119.99808 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.47128 * 179.97438 * 8 7 5 10 10 C 1.50695 * 109.47342 * 179.97438 * 9 8 7 11 11 H 1.08005 * 120.00025 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00259 * 179.97438 * 10 9 8 13 13 N 1.31518 * 119.99813 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00114 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47155 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47351 * 120.00099 * 14 12 10 17 17 H 1.48506 * 109.46885 * 239.99984 * 14 12 10 18 18 C 1.38891 * 119.92752 * 180.23310 * 3 2 1 19 19 C 1.38174 * 120.07147 * 359.48892 * 18 3 2 20 20 C 1.38140 * 120.13879 * 0.51200 * 19 18 3 21 21 C 1.38723 * 120.07111 * 179.97438 * 2 1 3 22 22 N 1.39935 * 120.03360 * 359.97438 * 21 2 1 23 23 C 1.47056 * 125.40929 * 270.00131 * 22 21 2 24 24 C 1.54105 * 103.86158 * 180.02562 * 23 22 21 25 25 N 1.47054 * 103.86510 * 0.02562 * 24 23 22 26 26 C 1.33947 * 109.17467 * 359.73339 * 25 24 23 27 27 O 1.21587 * 123.04067 * 180.25935 * 26 25 24 28 28 H 1.09004 * 109.46878 * 89.99881 * 1 2 3 29 29 H 1.09000 * 109.46810 * 209.99730 * 1 2 3 30 30 H 1.08989 * 109.47510 * 330.00075 * 1 2 3 31 31 H 0.96998 * 120.00285 * 325.26126 * 4 3 2 32 32 H 0.97001 * 120.00291 * 359.97438 * 7 5 4 33 33 H 1.09000 * 109.47154 * 299.99926 * 8 7 5 34 34 H 1.08998 * 109.47286 * 59.99711 * 8 7 5 35 35 H 1.09010 * 109.46910 * 300.00004 * 9 8 7 36 36 H 1.08998 * 109.47214 * 59.99739 * 9 8 7 37 37 H 0.97000 * 119.99693 * 180.02562 * 13 12 10 38 38 H 1.08009 * 119.96261 * 179.74873 * 18 3 2 39 39 H 1.08003 * 119.93534 * 180.22899 * 19 18 3 40 40 H 1.08005 * 119.96786 * 179.72126 * 20 19 18 41 41 H 1.09000 * 110.55028 * 298.59305 * 23 22 21 42 42 H 1.08991 * 110.55115 * 61.40844 * 23 22 21 43 43 H 1.09005 * 110.54796 * 118.59237 * 24 23 22 44 44 H 1.09001 * 110.55248 * 241.39921 * 24 23 22 45 45 H 0.96996 * 125.41368 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2023 1.2010 0.0000 4 7 1.5047 2.4141 -0.0010 5 6 2.0026 3.4783 0.6594 6 8 3.0959 3.4093 1.1869 7 7 1.2885 4.6188 0.7352 8 6 1.8296 5.7754 1.4535 9 6 0.8282 6.9303 1.3883 10 6 1.3844 8.1198 2.1278 11 1 2.3553 8.0583 2.5969 12 6 0.6544 9.2869 2.2045 13 7 -0.5277 9.3619 1.6328 14 14 1.3441 10.7615 3.1205 15 1 2.6811 10.4218 3.6701 16 1 1.4693 11.9098 2.1872 17 1 0.4300 11.1252 4.2329 18 6 3.5912 1.1976 -0.0049 19 6 4.2806 0.0002 0.0009 20 6 3.5915 -1.1970 0.0009 21 6 2.2021 -1.2005 0.0005 22 7 1.5047 -2.4137 0.0016 23 6 1.0804 -3.1515 1.2008 24 6 0.3664 -4.3949 0.6360 25 7 0.4647 -4.2259 -0.8215 26 6 1.1136 -3.0852 -1.0894 27 8 1.3312 -2.6962 -2.2207 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 0.6648 2.4903 -0.4803 32 1 0.4164 4.6740 0.3141 33 1 2.0068 5.5060 2.4947 34 1 2.7684 6.0826 0.9929 35 1 0.6514 7.1996 0.3469 36 1 -0.1109 6.6234 1.8487 37 1 -1.0411 10.1832 1.6864 38 1 4.1329 2.1320 -0.0090 39 1 5.3607 0.0001 0.0008 40 1 4.1332 -2.1314 0.0009 41 1 1.9455 -3.4448 1.7956 42 1 0.3917 -2.5516 1.7955 43 1 0.8769 -5.3052 0.9504 44 1 -0.6772 -4.4125 0.9500 45 1 0.1116 -4.8405 -1.4837 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000489891077.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:46:54 Heat of formation + Delta-G solvation = -37.048191 kcal Electronic energy + Delta-G solvation = -27645.928438 eV Core-core repulsion = 23662.898315 eV Total energy + Delta-G solvation = -3983.030124 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.40812 -41.63809 -39.81826 -37.48628 -36.82386 -36.04176 -35.09101 -34.73942 -32.98507 -31.59179 -30.28674 -29.42216 -27.87034 -26.70655 -24.66052 -23.80919 -23.28539 -22.56107 -22.17679 -21.08662 -19.66565 -19.06351 -18.43257 -18.16873 -17.69592 -17.03097 -16.96117 -16.58865 -16.48837 -16.14932 -15.85526 -15.54058 -15.26313 -15.15798 -14.93096 -14.78830 -14.51466 -14.34333 -14.28286 -13.55363 -13.29129 -13.21766 -13.17719 -13.09928 -12.94034 -12.61377 -12.51043 -12.43637 -12.26247 -11.67017 -11.56767 -11.46361 -11.35876 -11.10800 -10.60768 -10.45144 -10.10067 -9.67335 -9.66610 -9.09274 -8.23907 -6.33763 0.18418 0.26082 1.39451 1.41580 1.43663 1.55703 1.66044 2.00003 2.02420 2.41373 2.67477 3.01613 3.11289 3.21465 3.56000 3.80119 3.93812 4.07702 4.16289 4.33695 4.38655 4.45638 4.49633 4.50109 4.52191 4.63944 4.67805 4.71171 4.86718 4.91350 4.95208 5.11264 5.21644 5.24475 5.28280 5.44855 5.46588 5.50990 5.59604 5.70897 5.79014 5.93053 6.03432 6.16866 6.24251 6.44621 6.79699 6.94369 7.35478 7.43165 7.53298 8.88142 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027225 B = 0.001985 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.225255 B =14105.189279 C =14556.658322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.111 4.111 3 C 0.160 3.840 4 N -0.672 5.672 5 C 0.701 3.299 6 O -0.612 6.612 7 N -0.725 5.725 8 C 0.160 3.840 9 C 0.023 3.977 10 C -0.544 4.544 11 H 0.060 0.940 12 C 0.006 3.994 13 N -0.927 5.927 14 Si 0.965 3.035 15 H -0.265 1.265 16 H -0.278 1.278 17 H -0.277 1.277 18 C -0.130 4.130 19 C -0.097 4.097 20 C -0.125 4.125 21 C 0.169 3.831 22 N -0.587 5.587 23 C 0.083 3.917 24 C 0.097 3.903 25 N -0.730 5.730 26 C 0.692 3.308 27 O -0.633 6.633 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.420 0.580 32 H 0.409 0.591 33 H 0.048 0.952 34 H 0.047 0.953 35 H 0.009 0.991 36 H 0.010 0.990 37 H 0.265 0.735 38 H 0.125 0.875 39 H 0.151 0.849 40 H 0.141 0.859 41 H 0.101 0.899 42 H 0.096 0.904 43 H 0.111 0.889 44 H 0.109 0.891 45 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.146 -31.714 -1.058 31.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.115 4.115 3 C 0.064 3.936 4 N -0.321 5.321 5 C 0.401 3.599 6 O -0.492 6.492 7 N -0.380 5.380 8 C 0.036 3.964 9 C -0.015 4.015 10 C -0.582 4.582 11 H 0.078 0.922 12 C -0.193 4.193 13 N -0.566 5.566 14 Si 0.790 3.210 15 H -0.189 1.189 16 H -0.204 1.204 17 H -0.203 1.203 18 C -0.150 4.150 19 C -0.116 4.116 20 C -0.145 4.145 21 C 0.078 3.922 22 N -0.321 5.321 23 C -0.038 4.038 24 C -0.026 4.026 25 N -0.392 5.392 26 C 0.393 3.607 27 O -0.514 6.514 28 H 0.087 0.913 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.258 0.742 32 H 0.244 0.756 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.027 0.973 36 H 0.028 0.972 37 H 0.074 0.926 38 H 0.143 0.857 39 H 0.169 0.831 40 H 0.159 0.841 41 H 0.119 0.881 42 H 0.114 0.886 43 H 0.129 0.871 44 H 0.127 0.873 45 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 0.807 -31.277 -1.094 31.307 hybrid contribution -0.725 1.010 -0.405 1.307 sum 0.082 -30.268 -1.498 30.305 Atomic orbital electron populations 1.20633 0.89298 1.03667 1.02503 1.19973 0.97492 0.90613 1.03433 1.17280 0.91152 0.83928 1.01212 1.42398 1.26979 1.08463 1.54245 1.16049 0.83976 0.80576 0.79296 1.90872 1.21670 1.83336 1.53341 1.45240 1.22431 1.11757 1.58536 1.21146 0.96973 0.83587 0.94656 1.19145 0.94071 0.91753 0.96535 1.21488 1.04160 0.98031 1.34540 0.92174 1.25870 0.95154 1.01863 0.96403 1.70065 1.12891 1.28430 1.45239 0.85395 0.78717 0.78636 0.78292 1.18899 1.20361 1.20268 1.21461 0.93060 0.99839 1.00668 1.21118 1.01161 0.90568 0.98768 1.21439 0.92856 0.99156 1.01022 1.16619 0.89820 0.82680 1.03113 1.44139 1.59199 1.21260 1.07530 1.22871 1.01096 0.92333 0.87479 1.22660 1.03382 0.98309 0.78267 1.45046 1.60897 1.23136 1.10105 1.16170 0.78930 0.81754 0.83829 1.90948 1.64388 1.72983 1.23085 0.91336 0.90344 0.90724 0.74221 0.75563 0.93349 0.93415 0.97268 0.97164 0.92586 0.85664 0.83090 0.84131 0.88068 0.88626 0.87053 0.87293 0.71874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.95 9.23 71.24 0.66 -1.30 16 2 C -0.11 -2.64 5.91 -19.62 -0.12 -2.75 16 3 C 0.16 4.41 6.28 38.13 0.24 4.65 16 4 N -0.67 -17.96 4.75 -317.23 -1.51 -19.47 16 5 C 0.70 24.01 8.41 179.05 1.51 25.51 16 6 O -0.61 -25.34 13.75 -4.00 -0.06 -25.40 16 7 N -0.73 -24.79 5.56 -478.52 -2.66 -27.45 16 8 C 0.16 6.77 5.61 86.38 0.48 7.26 16 9 C 0.02 1.12 5.09 29.85 0.15 1.27 16 10 C -0.54 -30.04 9.11 25.60 0.23 -29.80 16 11 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 12 C 0.01 0.32 5.46 84.65 0.46 0.78 16 13 N -0.93 -53.93 13.29 21.45 0.28 -53.65 16 14 Si 0.96 43.40 29.54 68.60 2.03 45.43 16 15 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 16 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 17 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 18 C -0.13 -3.74 8.69 22.41 0.19 -3.54 16 19 C -0.10 -2.24 10.03 22.23 0.22 -2.02 16 20 C -0.12 -2.68 9.96 22.41 0.22 -2.46 16 21 C 0.17 3.81 5.41 38.13 0.21 4.02 16 22 N -0.59 -10.42 1.99 -646.82 -1.29 -11.70 16 23 C 0.08 0.63 7.36 86.65 0.64 1.26 16 24 C 0.10 0.27 8.06 86.65 0.70 0.97 16 25 N -0.73 -7.99 6.37 -477.33 -3.04 -11.04 16 26 C 0.69 14.82 8.57 179.57 1.54 16.36 16 27 O -0.63 -20.50 17.65 -3.99 -0.07 -20.57 16 28 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 29 H 0.08 1.24 6.68 -2.39 -0.02 1.23 16 30 H 0.07 1.29 7.17 -2.39 -0.02 1.27 16 31 H 0.42 8.63 7.87 -92.71 -0.73 7.90 16 32 H 0.41 11.74 8.49 -92.71 -0.79 10.95 16 33 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 36 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 38 H 0.13 4.16 6.19 -2.91 -0.02 4.15 16 39 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 40 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 41 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 42 H 0.10 0.55 7.61 -2.39 -0.02 0.53 16 43 H 0.11 -0.19 8.14 -2.38 -0.02 -0.21 16 44 H 0.11 -0.14 8.14 -2.39 -0.02 -0.16 16 45 H 0.44 3.42 8.96 -92.71 -0.83 2.59 16 Total: -1.00 -79.90 377.70 -0.26 -80.16 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: -1.29 Total: 23.47 kcal Atomic # 6 Polarization: 12.87 SS G_CDS: 7.34 Total: 20.21 kcal Atomic # 7 Polarization: -115.10 SS G_CDS: -8.21 Total: -123.31 kcal Atomic # 8 Polarization: -45.84 SS G_CDS: -0.13 Total: -45.96 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -79.90 -0.26 -80.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489891077.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.112 kcal (2) G-P(sol) polarization free energy of solvation -79.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds