Wall clock time and date at job start Tue Mar 31 2020 16:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38178 * 119.96411 * 2 1 4 4 C 1.38145 * 120.13454 * 180.25454 * 3 2 1 5 5 C 1.38933 * 120.06897 * 359.76573 * 4 3 2 6 6 N 1.39948 * 120.02923 * 179.97438 * 5 4 3 7 7 C 1.34780 * 119.99958 * 213.28335 * 6 5 4 8 8 O 1.21593 * 119.99684 * 5.32016 * 7 6 5 9 9 N 1.34775 * 120.00180 * 185.32235 * 7 6 5 10 10 C 1.46497 * 119.99924 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.46731 * 179.97438 * 10 9 7 12 12 C 1.50707 * 109.47021 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99607 * 0.02562 * 12 11 10 14 14 C 1.37868 * 120.00103 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00142 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00043 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47177 * 89.99878 * 16 14 12 18 18 H 1.48499 * 109.47247 * 209.99987 * 16 14 12 19 19 H 1.48499 * 109.47375 * 329.99900 * 16 14 12 20 20 C 1.38712 * 119.93406 * 359.97438 * 5 4 3 21 21 C 1.38764 * 119.86238 * 359.97438 * 20 5 4 22 22 N 1.39946 * 120.03493 * 179.97438 * 21 20 5 23 23 C 1.47057 * 125.40547 * 90.00427 * 22 21 20 24 24 C 1.54100 * 103.85989 * 179.97438 * 23 22 21 25 25 N 1.47052 * 103.86439 * 0.02562 * 24 23 22 26 26 C 1.33943 * 109.18041 * 359.97438 * 25 24 23 27 27 O 1.21587 * 123.04798 * 179.97438 * 26 25 24 28 28 H 1.08999 * 109.47163 * 270.25277 * 1 2 3 29 29 H 1.08994 * 109.47228 * 30.25849 * 1 2 3 30 30 H 1.09004 * 109.47103 * 150.25867 * 1 2 3 31 31 H 1.07998 * 119.93131 * 359.97438 * 3 2 1 32 32 H 1.08007 * 119.96205 * 179.74191 * 4 3 2 33 33 H 0.96996 * 120.00456 * 33.29304 * 6 5 4 34 34 H 0.97000 * 119.99936 * 359.97438 * 9 7 6 35 35 H 1.09000 * 109.46919 * 299.98970 * 10 9 7 36 36 H 1.08994 * 109.47832 * 59.99458 * 10 9 7 37 37 H 1.08991 * 109.47412 * 299.99470 * 11 10 9 38 38 H 1.08999 * 109.47090 * 60.00290 * 11 10 9 39 39 H 0.96999 * 119.99596 * 180.02562 * 15 14 12 40 40 H 1.07998 * 120.07162 * 180.02562 * 20 5 4 41 41 H 1.09004 * 110.54721 * 61.40899 * 23 22 21 42 42 H 1.08989 * 110.54893 * 298.59323 * 23 22 21 43 43 H 1.09005 * 110.54587 * 118.59619 * 24 23 22 44 44 H 1.08996 * 110.55223 * 241.40617 * 24 23 22 45 45 H 0.97003 * 125.40826 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1971 0.0000 4 6 3.5786 1.2012 -0.0053 5 6 4.2783 0.0009 -0.0057 6 7 5.6777 0.0061 -0.0117 7 6 6.3525 -0.9686 -0.6530 8 8 5.7487 -1.7969 -1.3070 9 7 7.6965 -1.0250 -0.5695 10 6 8.4299 -2.0841 -1.2671 11 6 9.9293 -1.9200 -1.0106 12 6 10.6838 -3.0098 -1.7277 13 1 10.1475 -3.7455 -2.3086 14 6 12.0586 -3.0676 -1.6422 15 7 12.7117 -2.1720 -0.9343 16 14 12.9939 -4.4180 -2.5316 17 1 13.3465 -3.9580 -3.8988 18 1 14.2349 -4.7374 -1.7813 19 1 12.1437 -5.6322 -2.6218 20 6 3.5884 -1.2024 -0.0003 21 6 2.2008 -1.2033 0.0061 22 7 1.5011 -2.4153 0.0110 23 6 1.0806 -3.1514 1.2127 24 6 0.3608 -4.3932 0.6518 25 7 0.4527 -4.2253 -0.8062 26 6 1.1079 -3.0890 -1.0778 27 8 1.3267 -2.7043 -2.2103 28 1 -0.3633 0.0045 1.0276 29 1 -0.3633 0.8876 -0.5178 30 1 -0.3633 -0.8923 -0.5098 31 1 1.6555 2.1314 -0.0004 32 1 4.1152 2.1385 -0.0095 33 1 6.1621 0.7109 0.4459 34 1 8.1782 -0.3640 -0.0481 35 1 8.1022 -3.0562 -0.8987 36 1 8.2352 -2.0166 -2.3374 37 1 10.2568 -0.9480 -1.3792 38 1 10.1243 -1.9874 0.0597 39 1 13.6790 -2.2125 -0.8745 40 1 4.1300 -2.1368 -0.0002 41 1 0.3953 -2.5496 1.8097 42 1 1.9475 -3.4457 1.8039 43 1 0.8705 -5.3046 0.9645 44 1 -0.6814 -4.4079 0.9706 45 1 0.0956 -4.8398 -1.4663 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000489955519.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:46:59 Heat of formation + Delta-G solvation = -12.914173 kcal Electronic energy + Delta-G solvation = -27821.713245 eV Core-core repulsion = 23839.729651 eV Total energy + Delta-G solvation = -3981.983594 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.51210 -40.35055 -38.74072 -36.46788 -35.57917 -34.73458 -33.86818 -32.91796 -31.59915 -30.24615 -29.48682 -28.86803 -26.48297 -24.64111 -23.81241 -23.16135 -22.14970 -21.13932 -20.69202 -20.25099 -18.39221 -18.02728 -17.26774 -16.88634 -16.36068 -16.02000 -15.69938 -15.42308 -14.92902 -14.87938 -14.51828 -14.36444 -14.21042 -13.95504 -13.81291 -13.68827 -13.49947 -13.25488 -12.81004 -12.68584 -12.52295 -12.29876 -12.20482 -11.80460 -11.54303 -11.21287 -11.05251 -10.64351 -10.43263 -10.35569 -10.13468 -9.95102 -9.59813 -9.51877 -9.28670 -8.95755 -8.89743 -8.60506 -8.39882 -7.93014 -6.10402 -4.13078 1.08402 1.30057 2.30444 2.84268 3.01609 3.28167 3.29670 3.35704 3.40417 3.62201 3.76309 4.04791 4.36554 4.50213 4.55078 4.73239 4.84431 4.89808 4.97085 5.04457 5.17907 5.26931 5.29624 5.33476 5.43370 5.49161 5.59017 5.71260 5.80681 6.11932 6.18740 6.28390 6.33132 6.35645 6.49795 6.70817 6.74930 6.86012 6.88919 7.07209 7.13189 7.26188 7.53189 7.60299 7.88460 8.18566 8.31099 8.46635 8.81569 8.93255 9.51883 11.01276 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015725 B = 0.002375 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.186913 B =11787.663667 C =13041.900982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.101 4.101 3 C -0.093 4.093 4 C -0.141 4.141 5 C 0.181 3.819 6 N -0.692 5.692 7 C 0.694 3.306 8 O -0.574 6.574 9 N -0.731 5.731 10 C 0.139 3.861 11 C 0.013 3.987 12 C -0.521 4.521 13 H 0.060 0.940 14 C 0.059 3.941 15 N -0.895 5.895 16 Si 0.897 3.103 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.272 1.272 20 C -0.106 4.106 21 C 0.181 3.819 22 N -0.587 5.587 23 C 0.094 3.906 24 C 0.094 3.906 25 N -0.742 5.742 26 C 0.702 3.298 27 O -0.569 6.569 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.130 0.870 32 H 0.129 0.871 33 H 0.407 0.593 34 H 0.395 0.605 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.023 0.977 38 H 0.023 0.977 39 H 0.262 0.738 40 H 0.141 0.859 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.372 4.377 10.498 29.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.103 4.103 3 C -0.113 4.113 4 C -0.162 4.162 5 C 0.084 3.916 6 N -0.340 5.340 7 C 0.394 3.606 8 O -0.451 6.451 9 N -0.384 5.384 10 C 0.016 3.984 11 C -0.024 4.024 12 C -0.560 4.560 13 H 0.078 0.922 14 C -0.143 4.143 15 N -0.534 5.534 16 Si 0.725 3.275 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.197 1.197 20 C -0.128 4.128 21 C 0.090 3.910 22 N -0.323 5.323 23 C -0.029 4.029 24 C -0.031 4.031 25 N -0.405 5.405 26 C 0.403 3.597 27 O -0.444 6.444 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.148 0.852 32 H 0.147 0.853 33 H 0.242 0.758 34 H 0.228 0.772 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.041 0.959 38 H 0.041 0.959 39 H 0.072 0.928 40 H 0.158 0.842 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.102 0.898 44 H 0.101 0.899 45 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -27.431 3.903 9.350 29.243 hybrid contribution 1.082 -0.388 -0.143 1.159 sum -26.349 3.515 9.207 28.132 Atomic orbital electron populations 1.20628 0.91061 1.02719 1.01681 1.20003 0.96343 0.92125 1.01839 1.20621 0.93157 0.97036 1.00449 1.20923 0.94361 0.96547 1.04393 1.17252 0.82021 0.93249 0.99079 1.42731 1.04312 1.29840 1.57088 1.16113 0.82612 0.81779 0.80104 1.90968 1.67715 1.41469 1.44906 1.45573 1.03989 1.34092 1.54793 1.21670 0.93595 0.87702 0.95426 1.19329 0.87175 0.98109 0.97807 1.21044 0.91587 1.12367 1.30977 0.92191 1.24990 0.97742 0.96205 0.95344 1.69956 1.08030 1.35035 1.40338 0.86502 0.79248 0.82128 0.79631 1.20527 1.21167 1.19708 1.21341 0.92868 0.98728 0.99888 1.16555 0.88923 0.82494 1.02987 1.44085 1.59582 1.22201 1.06391 1.22470 0.99833 0.91935 0.88628 1.22350 1.01418 0.98391 0.80981 1.45036 1.62374 1.25070 1.08062 1.15842 0.78657 0.80763 0.84443 1.91021 1.61564 1.71225 1.20567 0.91517 0.91517 0.92008 0.85202 0.85292 0.75801 0.77154 0.92567 0.92516 0.95901 0.95906 0.92843 0.84152 0.89779 0.89691 0.89766 0.89856 0.72761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.93 9.76 36.01 0.35 -0.57 16 2 C -0.10 -1.15 5.90 -104.40 -0.62 -1.76 16 3 C -0.09 -0.94 9.69 -39.64 -0.38 -1.32 16 4 C -0.14 -1.52 9.96 -39.36 -0.39 -1.91 16 5 C 0.18 2.47 6.28 -83.72 -0.53 1.94 16 6 N -0.69 -9.24 5.35 -14.24 -0.08 -9.31 16 7 C 0.69 12.38 8.30 -86.92 -0.72 11.66 16 8 O -0.57 -12.76 14.03 5.28 0.07 -12.69 16 9 N -0.73 -12.83 5.56 -65.23 -0.36 -13.19 16 10 C 0.14 2.99 5.61 -4.04 -0.02 2.97 16 11 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 12 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 13 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 15 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 16 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 20 C -0.11 -1.63 8.57 -39.21 -0.34 -1.97 16 21 C 0.18 2.46 5.41 -83.71 -0.45 2.01 16 22 N -0.59 -7.14 2.07 -118.27 -0.24 -7.38 16 23 C 0.09 0.66 7.62 -3.16 -0.02 0.64 16 24 C 0.09 0.50 8.06 -3.17 -0.03 0.48 16 25 N -0.74 -6.87 6.37 -64.70 -0.41 -7.28 16 26 C 0.70 10.04 7.97 -88.40 -0.70 9.33 16 27 O -0.57 -11.18 17.65 5.29 0.09 -11.09 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 30 H 0.06 0.65 6.96 -51.93 -0.36 0.29 16 31 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 33 H 0.41 3.87 8.83 -40.82 -0.36 3.51 16 34 H 0.40 5.79 8.49 -40.82 -0.35 5.44 16 35 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 40 H 0.14 2.53 6.41 -52.49 -0.34 2.20 16 41 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.08 0.55 8.14 -51.94 -0.42 0.12 16 43 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 45 H 0.43 3.22 8.96 -40.82 -0.37 2.86 16 LS Contribution 381.15 15.07 5.74 5.74 Total: -1.00 -38.52 381.15 -10.26 -48.78 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -6.38 Total: 6.92 kcal Atomic # 6 Polarization: 12.80 SS G_CDS: -4.41 Total: 8.40 kcal Atomic # 7 Polarization: -62.19 SS G_CDS: -0.36 Total: -62.55 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: 0.17 Total: -23.77 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -38.52 -10.26 -48.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489955519.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.868 kcal (2) G-P(sol) polarization free energy of solvation -38.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds