Wall clock time and date at job start Tue Mar 31 2020 16:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38178 * 119.96411 * 2 1 4 4 C 1.38145 * 120.13454 * 180.25454 * 3 2 1 5 5 C 1.38933 * 120.06897 * 359.76573 * 4 3 2 6 6 N 1.39948 * 120.02923 * 179.97438 * 5 4 3 7 7 C 1.34780 * 119.99958 * 213.28335 * 6 5 4 8 8 O 1.21593 * 119.99684 * 5.32016 * 7 6 5 9 9 N 1.34775 * 120.00180 * 185.32235 * 7 6 5 10 10 C 1.46497 * 119.99924 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.46731 * 179.97438 * 10 9 7 12 12 C 1.50707 * 109.47021 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99607 * 0.02562 * 12 11 10 14 14 C 1.37868 * 120.00103 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00142 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00043 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47177 * 89.99878 * 16 14 12 18 18 H 1.48499 * 109.47247 * 209.99987 * 16 14 12 19 19 H 1.48499 * 109.47375 * 329.99900 * 16 14 12 20 20 C 1.38712 * 119.93406 * 359.97438 * 5 4 3 21 21 C 1.38764 * 119.86238 * 359.97438 * 20 5 4 22 22 N 1.39946 * 120.03493 * 179.97438 * 21 20 5 23 23 C 1.47057 * 125.40547 * 90.00427 * 22 21 20 24 24 C 1.54100 * 103.85989 * 179.97438 * 23 22 21 25 25 N 1.47052 * 103.86439 * 0.02562 * 24 23 22 26 26 C 1.33943 * 109.18041 * 359.97438 * 25 24 23 27 27 O 1.21587 * 123.04798 * 179.97438 * 26 25 24 28 28 H 1.08999 * 109.47163 * 270.25277 * 1 2 3 29 29 H 1.08994 * 109.47228 * 30.25849 * 1 2 3 30 30 H 1.09004 * 109.47103 * 150.25867 * 1 2 3 31 31 H 1.07998 * 119.93131 * 359.97438 * 3 2 1 32 32 H 1.08007 * 119.96205 * 179.74191 * 4 3 2 33 33 H 0.96996 * 120.00456 * 33.29304 * 6 5 4 34 34 H 0.97000 * 119.99936 * 359.97438 * 9 7 6 35 35 H 1.09000 * 109.46919 * 299.98970 * 10 9 7 36 36 H 1.08994 * 109.47832 * 59.99458 * 10 9 7 37 37 H 1.08991 * 109.47412 * 299.99470 * 11 10 9 38 38 H 1.08999 * 109.47090 * 60.00290 * 11 10 9 39 39 H 0.96999 * 119.99596 * 180.02562 * 15 14 12 40 40 H 1.07998 * 120.07162 * 180.02562 * 20 5 4 41 41 H 1.09004 * 110.54721 * 61.40899 * 23 22 21 42 42 H 1.08989 * 110.54893 * 298.59323 * 23 22 21 43 43 H 1.09005 * 110.54587 * 118.59619 * 24 23 22 44 44 H 1.08996 * 110.55223 * 241.40617 * 24 23 22 45 45 H 0.97003 * 125.40826 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1971 0.0000 4 6 3.5786 1.2012 -0.0053 5 6 4.2783 0.0009 -0.0057 6 7 5.6777 0.0061 -0.0117 7 6 6.3525 -0.9686 -0.6530 8 8 5.7487 -1.7969 -1.3070 9 7 7.6965 -1.0250 -0.5695 10 6 8.4299 -2.0841 -1.2671 11 6 9.9293 -1.9200 -1.0106 12 6 10.6838 -3.0098 -1.7277 13 1 10.1475 -3.7455 -2.3086 14 6 12.0586 -3.0676 -1.6422 15 7 12.7117 -2.1720 -0.9343 16 14 12.9939 -4.4180 -2.5316 17 1 13.3465 -3.9580 -3.8988 18 1 14.2349 -4.7374 -1.7813 19 1 12.1437 -5.6322 -2.6218 20 6 3.5884 -1.2024 -0.0003 21 6 2.2008 -1.2033 0.0061 22 7 1.5011 -2.4153 0.0110 23 6 1.0806 -3.1514 1.2127 24 6 0.3608 -4.3932 0.6518 25 7 0.4527 -4.2253 -0.8062 26 6 1.1079 -3.0890 -1.0778 27 8 1.3267 -2.7043 -2.2103 28 1 -0.3633 0.0045 1.0276 29 1 -0.3633 0.8876 -0.5178 30 1 -0.3633 -0.8923 -0.5098 31 1 1.6555 2.1314 -0.0004 32 1 4.1152 2.1385 -0.0095 33 1 6.1621 0.7109 0.4459 34 1 8.1782 -0.3640 -0.0481 35 1 8.1022 -3.0562 -0.8987 36 1 8.2352 -2.0166 -2.3374 37 1 10.2568 -0.9480 -1.3792 38 1 10.1243 -1.9874 0.0597 39 1 13.6790 -2.2125 -0.8745 40 1 4.1300 -2.1368 -0.0002 41 1 0.3953 -2.5496 1.8097 42 1 1.9475 -3.4457 1.8039 43 1 0.8705 -5.3046 0.9645 44 1 -0.6814 -4.4079 0.9706 45 1 0.0956 -4.8398 -1.4663 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000489955519.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:46:58 Heat of formation + Delta-G solvation = -42.059536 kcal Electronic energy + Delta-G solvation = -27822.977083 eV Core-core repulsion = 23839.729651 eV Total energy + Delta-G solvation = -3983.247432 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.41322 -41.60244 -39.83748 -37.54674 -36.93830 -36.21936 -34.93805 -34.72761 -32.72837 -31.23895 -31.08847 -29.62744 -27.60975 -26.40867 -24.73061 -23.83663 -23.38467 -22.72527 -22.02896 -21.30090 -19.67353 -19.09851 -18.48582 -18.20215 -17.70143 -17.00650 -16.94033 -16.52729 -16.45110 -16.11668 -15.95723 -15.33340 -15.31885 -15.22604 -15.04563 -14.81512 -14.50289 -14.42875 -14.27904 -13.48740 -13.29229 -13.25367 -13.17960 -13.14202 -12.95293 -12.66265 -12.54999 -12.39828 -12.28514 -11.71915 -11.59951 -11.52827 -11.33344 -11.11845 -10.62434 -10.49866 -10.12925 -9.83900 -9.68759 -8.96540 -8.26200 -6.36358 0.15664 0.33050 1.39784 1.40842 1.44346 1.52241 1.61362 1.96726 1.98089 2.39418 2.69996 2.98264 3.08709 3.21998 3.51435 3.89776 3.98776 4.09709 4.15448 4.31625 4.33838 4.42390 4.45918 4.47938 4.57390 4.68678 4.77013 4.80505 4.81757 4.89447 4.91388 5.08941 5.20496 5.24524 5.30273 5.43164 5.46390 5.56069 5.58790 5.71313 5.75831 5.94634 6.01715 6.14365 6.22052 6.41376 6.76143 6.96447 7.32848 7.42892 7.48727 8.85708 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015725 B = 0.002375 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.186913 B =11787.663667 C =13041.900982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.103 4.103 3 C -0.086 4.086 4 C -0.129 4.129 5 C 0.154 3.846 6 N -0.670 5.670 7 C 0.695 3.305 8 O -0.622 6.622 9 N -0.723 5.723 10 C 0.160 3.840 11 C 0.026 3.974 12 C -0.548 4.548 13 H 0.056 0.944 14 C 0.009 3.991 15 N -0.925 5.925 16 Si 0.964 3.036 17 H -0.272 1.272 18 H -0.277 1.277 19 H -0.268 1.268 20 C -0.135 4.135 21 C 0.160 3.840 22 N -0.590 5.590 23 C 0.086 3.914 24 C 0.096 3.904 25 N -0.733 5.733 26 C 0.688 3.312 27 O -0.638 6.638 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.041 0.959 31 H 0.170 0.830 32 H 0.163 0.837 33 H 0.427 0.573 34 H 0.411 0.589 35 H 0.043 0.957 36 H 0.042 0.958 37 H 0.011 0.989 38 H 0.012 0.988 39 H 0.267 0.733 40 H 0.100 0.900 41 H 0.113 0.887 42 H 0.086 0.914 43 H 0.102 0.898 44 H 0.121 0.879 45 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.133 5.513 11.965 31.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.105 4.105 3 C -0.105 4.105 4 C -0.149 4.149 5 C 0.059 3.941 6 N -0.320 5.320 7 C 0.395 3.605 8 O -0.502 6.502 9 N -0.377 5.377 10 C 0.036 3.964 11 C -0.012 4.012 12 C -0.587 4.587 13 H 0.075 0.925 14 C -0.190 4.190 15 N -0.564 5.564 16 Si 0.788 3.212 17 H -0.198 1.198 18 H -0.203 1.203 19 H -0.192 1.192 20 C -0.157 4.157 21 C 0.070 3.930 22 N -0.324 5.324 23 C -0.035 4.035 24 C -0.028 4.028 25 N -0.395 5.395 26 C 0.389 3.611 27 O -0.519 6.519 28 H 0.112 0.888 29 H 0.101 0.899 30 H 0.060 0.940 31 H 0.188 0.812 32 H 0.181 0.819 33 H 0.266 0.734 34 H 0.247 0.753 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.030 0.970 38 H 0.030 0.970 39 H 0.075 0.925 40 H 0.118 0.882 41 H 0.131 0.869 42 H 0.104 0.896 43 H 0.120 0.880 44 H 0.139 0.861 45 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -29.228 5.061 10.922 31.610 hybrid contribution 1.526 -0.710 -0.518 1.761 sum -27.702 4.351 10.405 29.910 Atomic orbital electron populations 1.20659 0.89063 1.02520 1.03337 1.20409 0.97902 0.91732 1.00472 1.21122 0.92980 0.98029 0.98341 1.21283 0.94869 0.96422 1.02316 1.17515 0.81740 0.93988 1.00886 1.42380 1.04493 1.28979 1.56109 1.16193 0.82302 0.82059 0.79928 1.90950 1.68584 1.43570 1.47070 1.45187 1.04095 1.33676 1.54790 1.21126 0.92090 0.88377 0.94849 1.19119 0.88760 0.96712 0.96592 1.21446 0.92477 1.13225 1.31520 0.92542 1.25837 0.98629 0.98514 0.96014 1.70048 1.08528 1.36538 1.41317 0.85460 0.77928 0.79197 0.78567 1.19797 1.20263 1.19244 1.21207 0.93954 0.97954 1.02604 1.16823 0.88571 0.84077 1.03568 1.44206 1.58740 1.22042 1.07418 1.22851 1.00715 0.92617 0.87340 1.22693 1.03713 0.98240 0.78107 1.45055 1.60752 1.23369 1.10280 1.16268 0.78950 0.81886 0.83987 1.90946 1.64440 1.73200 1.23325 0.88776 0.89885 0.93976 0.81222 0.81915 0.73420 0.75269 0.93808 0.93966 0.97045 0.96956 0.92461 0.88165 0.86910 0.89552 0.87990 0.86124 0.71995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.51 9.76 71.24 0.70 -0.82 16 2 C -0.10 -2.18 5.90 -19.72 -0.12 -2.30 16 3 C -0.09 -1.45 9.69 22.23 0.22 -1.23 16 4 C -0.13 -2.44 9.96 22.41 0.22 -2.21 16 5 C 0.15 4.21 6.28 38.12 0.24 4.45 16 6 N -0.67 -17.84 5.35 -317.23 -1.70 -19.54 16 7 C 0.69 25.67 8.30 179.05 1.49 27.16 16 8 O -0.62 -29.37 14.03 -4.01 -0.06 -29.43 16 9 N -0.72 -25.99 5.56 -478.54 -2.66 -28.65 16 10 C 0.16 7.16 5.61 86.38 0.48 7.65 16 11 C 0.03 1.31 5.09 29.85 0.15 1.46 16 12 C -0.55 -31.14 9.11 25.60 0.23 -30.91 16 13 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 14 C 0.01 0.51 5.46 84.65 0.46 0.97 16 15 N -0.92 -54.31 13.29 21.44 0.28 -54.02 16 16 Si 0.96 44.19 29.54 68.60 2.03 46.22 16 17 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 18 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 19 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 20 C -0.13 -4.38 8.57 22.51 0.19 -4.19 16 21 C 0.16 4.45 5.41 38.13 0.21 4.65 16 22 N -0.59 -14.64 2.07 -646.81 -1.34 -15.98 16 23 C 0.09 1.10 7.62 86.65 0.66 1.76 16 24 C 0.10 0.83 8.06 86.65 0.70 1.53 16 25 N -0.73 -13.45 6.37 -477.35 -3.04 -16.49 16 26 C 0.69 20.58 7.97 179.57 1.43 22.02 16 27 O -0.64 -26.91 17.65 -3.99 -0.07 -26.98 16 28 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.08 1.01 8.09 -2.39 -0.02 0.99 16 30 H 0.04 0.83 6.96 -2.38 -0.02 0.81 16 31 H 0.17 1.53 8.06 -2.91 -0.02 1.50 16 32 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 33 H 0.43 7.55 8.83 -92.71 -0.82 6.73 16 34 H 0.41 12.04 8.49 -92.71 -0.79 11.25 16 35 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 40 H 0.10 4.01 6.41 -2.91 -0.02 3.99 16 41 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.10 0.57 8.14 -2.38 -0.02 0.55 16 44 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 45 H 0.44 6.56 8.96 -92.71 -0.83 5.73 16 Total: -1.00 -89.82 381.15 -0.68 -90.50 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: -1.39 Total: 24.40 kcal Atomic # 6 Polarization: 22.72 SS G_CDS: 7.26 Total: 29.98 kcal Atomic # 7 Polarization: -126.23 SS G_CDS: -8.45 Total: -134.69 kcal Atomic # 8 Polarization: -56.28 SS G_CDS: -0.13 Total: -56.41 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -89.82 -0.68 -90.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489955519.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.437 kcal (2) G-P(sol) polarization free energy of solvation -89.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds