Wall clock time and date at job start Tue Mar 31 2020 16:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38175 * 119.96299 * 2 1 4 4 C 1.38145 * 120.13913 * 179.76113 * 3 2 1 5 5 C 1.38934 * 120.06389 * 0.50857 * 4 3 2 6 6 N 1.39953 * 120.03024 * 179.76440 * 5 4 3 7 7 C 1.34779 * 119.99404 * 214.82335 * 6 5 4 8 8 O 1.21584 * 120.00652 * 355.38866 * 7 6 5 9 9 N 1.34781 * 119.99352 * 175.38838 * 7 6 5 10 10 C 1.46499 * 119.99707 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.47133 * 324.99977 * 10 9 7 12 12 C 1.52999 * 109.47353 * 85.00068 * 10 9 7 13 13 C 1.50698 * 109.47069 * 204.99805 * 10 9 7 14 14 H 1.08006 * 120.00015 * 0.02562 * 13 10 9 15 15 C 1.37881 * 119.99990 * 180.27424 * 13 10 9 16 16 N 1.31506 * 120.00041 * 359.72934 * 15 13 10 17 17 Si 1.86803 * 119.99654 * 179.72609 * 15 13 10 18 18 H 1.48496 * 109.47361 * 60.00127 * 17 15 13 19 19 H 1.48509 * 109.46734 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47276 * 299.99903 * 17 15 13 21 21 C 1.38713 * 119.93345 * 359.49345 * 5 4 3 22 22 C 1.38761 * 119.86455 * 0.24710 * 21 5 4 23 23 N 1.39944 * 120.04128 * 180.02562 * 22 21 5 24 24 C 1.47054 * 125.40783 * 89.99813 * 23 22 21 25 25 C 1.54104 * 103.86033 * 180.02562 * 24 23 22 26 26 N 1.47057 * 103.86607 * 0.02562 * 25 24 23 27 27 C 1.33947 * 125.40804 * 269.70076 * 23 22 21 28 28 O 1.21586 * 123.04522 * 359.97438 * 27 23 22 29 29 H 1.09002 * 109.47130 * 269.97674 * 1 2 3 30 30 H 1.08995 * 109.47043 * 29.98317 * 1 2 3 31 31 H 1.08997 * 109.46778 * 149.97807 * 1 2 3 32 32 H 1.08006 * 119.93670 * 0.02562 * 3 2 1 33 33 H 1.08005 * 119.96725 * 180.25312 * 4 3 2 34 34 H 0.96986 * 119.99966 * 34.82636 * 6 5 4 35 35 H 0.96995 * 120.00315 * 0.02562 * 9 7 6 36 36 H 1.08999 * 109.47627 * 180.02562 * 12 10 9 37 37 H 1.09005 * 109.47154 * 300.00021 * 12 10 9 38 38 H 1.09004 * 109.46865 * 59.99481 * 12 10 9 39 39 H 0.97000 * 119.99927 * 180.02562 * 16 15 13 40 40 H 1.08003 * 120.06990 * 180.23092 * 21 5 4 41 41 H 1.08992 * 110.55076 * 298.59536 * 24 23 22 42 42 H 1.08995 * 110.54565 * 61.41510 * 24 23 22 43 43 H 1.09006 * 110.54971 * 118.59771 * 25 24 23 44 44 H 1.08999 * 110.55291 * 241.41020 * 25 24 23 45 45 H 0.96992 * 125.41411 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1971 0.0000 4 6 3.5786 1.2013 0.0050 5 6 4.2783 0.0011 -0.0007 6 7 5.6779 0.0062 -0.0006 7 6 6.3552 -0.9464 -0.6717 8 8 5.7536 -1.8574 -1.2068 9 7 7.6995 -0.8890 -0.7495 10 6 8.4358 -1.9241 -1.4793 11 1 7.9353 -2.8840 -1.3521 12 6 8.4809 -1.5655 -2.9660 13 6 9.8407 -2.0149 -0.9417 14 1 10.1537 -1.3666 -0.1365 15 6 10.7280 -2.9219 -1.4811 16 7 10.3468 -3.7115 -2.4612 17 14 12.4717 -3.0291 -0.8197 18 1 12.4334 -3.3792 0.6229 19 1 13.2199 -4.0742 -1.5636 20 1 13.1484 -1.7186 -0.9931 21 6 3.5885 -1.2023 -0.0007 22 6 2.2008 -1.2033 -0.0003 23 7 1.5011 -2.4152 0.0003 24 6 1.0755 -3.1528 1.1991 25 6 0.3592 -4.3946 0.6337 26 7 0.4578 -4.2252 -0.8237 27 6 1.1078 -3.0848 -1.0912 28 8 1.3252 -2.6951 -2.2222 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3633 0.8901 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6555 2.1315 0.0004 33 1 4.1152 2.1386 0.0091 34 1 6.1602 0.6952 0.4824 35 1 8.1795 -0.1624 -0.3222 36 1 9.0283 -2.3359 -3.5092 37 1 7.4648 -1.4998 -3.3550 38 1 8.9814 -0.6055 -3.0932 39 1 10.9710 -4.3498 -2.8405 40 1 4.1302 -2.1367 -0.0013 41 1 1.9399 -3.4479 1.7938 42 1 0.3877 -2.5518 1.7939 43 1 0.8680 -5.3060 0.9479 44 1 -0.6845 -4.4103 0.9476 45 1 0.1042 -4.8391 -1.4861 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490322756.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:47:20 Heat of formation + Delta-G solvation = -5.466334 kcal Electronic energy + Delta-G solvation = -28504.302223 eV Core-core repulsion = 24522.641591 eV Total energy + Delta-G solvation = -3981.660631 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.37207 -40.07285 -38.50987 -36.34064 -35.47253 -34.54575 -33.67048 -32.52027 -31.30432 -30.09380 -28.83568 -28.64548 -26.11210 -25.22644 -23.68081 -23.03713 -22.22040 -21.24542 -20.11345 -19.82566 -18.25602 -18.02471 -17.14856 -16.77553 -16.11682 -15.74490 -15.49697 -15.21185 -14.98455 -14.54028 -14.43401 -14.20345 -13.91611 -13.80544 -13.59257 -13.52407 -13.15683 -12.69882 -12.57024 -12.44064 -12.36509 -12.13301 -11.73795 -11.60704 -11.39288 -11.09448 -10.97525 -10.73209 -10.33392 -10.23932 -10.21787 -9.88132 -9.45155 -9.34751 -9.04157 -8.81649 -8.72198 -8.55539 -8.06543 -7.67317 -6.11623 -4.21335 1.24496 1.47864 2.43948 3.11900 3.20198 3.25581 3.31070 3.33183 3.56838 3.77451 4.01092 4.16168 4.32434 4.62353 4.85909 4.95253 4.98764 5.01929 5.10723 5.17709 5.20575 5.32716 5.42279 5.45597 5.56082 5.63048 5.74753 5.91844 5.93433 6.32128 6.44652 6.44875 6.66991 6.82471 6.91179 7.00854 7.01817 7.14516 7.24086 7.29585 7.39181 7.48188 7.62490 7.84734 8.01080 8.16855 8.59533 8.73253 8.85662 9.25278 9.47123 10.94309 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015742 B = 0.002853 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.223171 B = 9813.022025 C =10802.592060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.104 4.104 3 C -0.096 4.096 4 C -0.144 4.144 5 C 0.183 3.817 6 N -0.696 5.696 7 C 0.690 3.310 8 O -0.577 6.577 9 N -0.718 5.718 10 C 0.281 3.719 11 H 0.049 0.951 12 C -0.149 4.149 13 C -0.535 4.535 14 H 0.061 0.939 15 C 0.067 3.933 16 N -0.882 5.882 17 Si 0.903 3.097 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.276 1.276 21 C -0.106 4.106 22 C 0.179 3.821 23 N -0.586 5.586 24 C 0.094 3.906 25 C 0.094 3.906 26 N -0.743 5.743 27 C 0.702 3.298 28 O -0.568 6.568 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.403 0.597 35 H 0.386 0.614 36 H 0.091 0.909 37 H 0.016 0.984 38 H 0.026 0.974 39 H 0.265 0.735 40 H 0.147 0.853 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.753 5.829 11.482 24.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.106 4.106 3 C -0.115 4.115 4 C -0.165 4.165 5 C 0.086 3.914 6 N -0.344 5.344 7 C 0.391 3.609 8 O -0.454 6.454 9 N -0.369 5.369 10 C 0.179 3.821 11 H 0.067 0.933 12 C -0.207 4.207 13 C -0.574 4.574 14 H 0.079 0.921 15 C -0.137 4.137 16 N -0.519 5.519 17 Si 0.730 3.270 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.202 1.202 21 C -0.128 4.128 22 C 0.088 3.912 23 N -0.321 5.321 24 C -0.029 4.029 25 C -0.031 4.031 26 N -0.406 5.406 27 C 0.403 3.597 28 O -0.444 6.444 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.238 0.762 35 H 0.218 0.782 36 H 0.109 0.891 37 H 0.035 0.965 38 H 0.045 0.955 39 H 0.075 0.925 40 H 0.165 0.835 41 H 0.103 0.897 42 H 0.101 0.899 43 H 0.102 0.898 44 H 0.100 0.900 45 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -20.893 5.085 10.223 23.809 hybrid contribution 1.390 0.241 0.541 1.511 sum -19.503 5.327 10.763 22.904 Atomic orbital electron populations 1.20614 0.91210 1.02603 1.01547 1.19975 0.96214 0.92180 1.02263 1.20586 0.93180 0.96920 1.00791 1.20929 0.94333 0.96566 1.04672 1.17296 0.82337 0.93070 0.98726 1.42823 1.04100 1.32503 1.54983 1.16205 0.83026 0.82189 0.79529 1.90915 1.67704 1.35167 1.51634 1.45861 1.03172 1.30786 1.57125 1.18674 0.89945 0.85684 0.87760 0.93323 1.22107 0.98142 1.00994 0.99495 1.21170 0.95715 1.21216 1.19275 0.92121 1.24885 0.98900 0.95129 0.94776 1.69898 1.35715 1.21748 1.24586 0.86490 0.83695 0.77815 0.78958 1.20190 1.21114 1.20170 1.21540 0.92715 0.99238 0.99293 1.16594 0.89050 0.82388 1.03139 1.44070 1.59433 1.22333 1.06307 1.22460 0.99772 0.91881 0.88753 1.22343 1.01303 0.98427 0.81034 1.45031 1.62753 1.24789 1.08022 1.15844 0.78627 0.80769 0.84456 1.91018 1.61495 1.71108 1.20743 0.91643 0.91638 0.92074 0.85398 0.85478 0.76179 0.78185 0.89084 0.96520 0.95515 0.92468 0.83540 0.89683 0.89873 0.89790 0.89965 0.72816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.04 9.76 36.01 0.35 -0.69 16 2 C -0.10 -1.33 5.90 -104.40 -0.62 -1.95 16 3 C -0.10 -1.09 9.68 -39.64 -0.38 -1.48 16 4 C -0.14 -1.78 9.96 -39.36 -0.39 -2.17 16 5 C 0.18 2.86 6.30 -83.72 -0.53 2.33 16 6 N -0.70 -10.95 5.34 -14.24 -0.08 -11.02 16 7 C 0.69 14.47 8.37 -86.91 -0.73 13.74 16 8 O -0.58 -14.69 13.44 5.29 0.07 -14.62 16 9 N -0.72 -15.19 5.07 -59.81 -0.30 -15.50 16 10 C 0.28 7.30 2.56 -69.08 -0.18 7.13 16 11 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 12 C -0.15 -3.84 9.26 37.16 0.34 -3.50 16 13 C -0.54 -14.26 8.73 -34.44 -0.30 -14.56 16 14 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 15 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 16 N -0.88 -25.15 11.31 55.43 0.63 -24.53 16 17 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 21 C -0.11 -1.84 8.61 -39.21 -0.34 -2.18 16 22 C 0.18 2.72 5.41 -83.72 -0.45 2.27 16 23 N -0.59 -8.02 2.07 -118.27 -0.24 -8.26 16 24 C 0.09 0.79 7.62 -3.16 -0.02 0.76 16 25 C 0.09 0.62 8.06 -3.16 -0.03 0.59 16 26 N -0.74 -7.84 6.38 -64.69 -0.41 -8.25 16 27 C 0.70 11.06 7.97 -88.39 -0.70 10.36 16 28 O -0.57 -12.02 17.65 5.29 0.09 -11.93 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 31 H 0.06 0.71 6.96 -51.93 -0.36 0.35 16 32 H 0.13 1.08 8.06 -52.48 -0.42 0.65 16 33 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 34 H 0.40 4.73 8.84 -40.82 -0.36 4.37 16 35 H 0.39 6.87 8.56 -40.82 -0.35 6.52 16 36 H 0.09 2.54 6.06 -51.93 -0.31 2.22 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.15 3.01 6.22 -52.48 -0.33 2.68 16 41 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.43 3.74 8.96 -40.82 -0.37 3.38 16 LS Contribution 376.04 15.07 5.67 5.67 Total: -1.00 -37.59 376.04 -9.91 -47.49 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -6.24 Total: 12.93 kcal Atomic # 6 Polarization: 16.44 SS G_CDS: -4.07 Total: 12.37 kcal Atomic # 7 Polarization: -67.15 SS G_CDS: -0.41 Total: -67.56 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: 0.16 Total: -26.55 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -37.59 -9.91 -47.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490322756.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.027 kcal (2) G-P(sol) polarization free energy of solvation -37.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds