Wall clock time and date at job start Tue Mar 31 2020 16:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38175 * 119.96299 * 2 1 4 4 C 1.38145 * 120.13913 * 179.76113 * 3 2 1 5 5 C 1.38934 * 120.06389 * 0.50857 * 4 3 2 6 6 N 1.39953 * 120.03024 * 179.76440 * 5 4 3 7 7 C 1.34779 * 119.99404 * 214.82335 * 6 5 4 8 8 O 1.21584 * 120.00652 * 355.38866 * 7 6 5 9 9 N 1.34781 * 119.99352 * 175.38838 * 7 6 5 10 10 C 1.46499 * 119.99707 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.47133 * 324.99977 * 10 9 7 12 12 C 1.52999 * 109.47353 * 85.00068 * 10 9 7 13 13 C 1.50698 * 109.47069 * 204.99805 * 10 9 7 14 14 H 1.08006 * 120.00015 * 0.02562 * 13 10 9 15 15 C 1.37881 * 119.99990 * 180.27424 * 13 10 9 16 16 N 1.31506 * 120.00041 * 359.72934 * 15 13 10 17 17 Si 1.86803 * 119.99654 * 179.72609 * 15 13 10 18 18 H 1.48496 * 109.47361 * 60.00127 * 17 15 13 19 19 H 1.48509 * 109.46734 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47276 * 299.99903 * 17 15 13 21 21 C 1.38713 * 119.93345 * 359.49345 * 5 4 3 22 22 C 1.38761 * 119.86455 * 0.24710 * 21 5 4 23 23 N 1.39944 * 120.04128 * 180.02562 * 22 21 5 24 24 C 1.47054 * 125.40783 * 89.99813 * 23 22 21 25 25 C 1.54104 * 103.86033 * 180.02562 * 24 23 22 26 26 N 1.47057 * 103.86607 * 0.02562 * 25 24 23 27 27 C 1.33947 * 125.40804 * 269.70076 * 23 22 21 28 28 O 1.21586 * 123.04522 * 359.97438 * 27 23 22 29 29 H 1.09002 * 109.47130 * 269.97674 * 1 2 3 30 30 H 1.08995 * 109.47043 * 29.98317 * 1 2 3 31 31 H 1.08997 * 109.46778 * 149.97807 * 1 2 3 32 32 H 1.08006 * 119.93670 * 0.02562 * 3 2 1 33 33 H 1.08005 * 119.96725 * 180.25312 * 4 3 2 34 34 H 0.96986 * 119.99966 * 34.82636 * 6 5 4 35 35 H 0.96995 * 120.00315 * 0.02562 * 9 7 6 36 36 H 1.08999 * 109.47627 * 180.02562 * 12 10 9 37 37 H 1.09005 * 109.47154 * 300.00021 * 12 10 9 38 38 H 1.09004 * 109.46865 * 59.99481 * 12 10 9 39 39 H 0.97000 * 119.99927 * 180.02562 * 16 15 13 40 40 H 1.08003 * 120.06990 * 180.23092 * 21 5 4 41 41 H 1.08992 * 110.55076 * 298.59536 * 24 23 22 42 42 H 1.08995 * 110.54565 * 61.41510 * 24 23 22 43 43 H 1.09006 * 110.54971 * 118.59771 * 25 24 23 44 44 H 1.08999 * 110.55291 * 241.41020 * 25 24 23 45 45 H 0.96992 * 125.41411 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1971 0.0000 4 6 3.5786 1.2013 0.0050 5 6 4.2783 0.0011 -0.0007 6 7 5.6779 0.0062 -0.0006 7 6 6.3552 -0.9464 -0.6717 8 8 5.7536 -1.8574 -1.2068 9 7 7.6995 -0.8890 -0.7495 10 6 8.4358 -1.9241 -1.4793 11 1 7.9353 -2.8840 -1.3521 12 6 8.4809 -1.5655 -2.9660 13 6 9.8407 -2.0149 -0.9417 14 1 10.1537 -1.3666 -0.1365 15 6 10.7280 -2.9219 -1.4811 16 7 10.3468 -3.7115 -2.4612 17 14 12.4717 -3.0291 -0.8197 18 1 12.4334 -3.3792 0.6229 19 1 13.2199 -4.0742 -1.5636 20 1 13.1484 -1.7186 -0.9931 21 6 3.5885 -1.2023 -0.0007 22 6 2.2008 -1.2033 -0.0003 23 7 1.5011 -2.4152 0.0003 24 6 1.0755 -3.1528 1.1991 25 6 0.3592 -4.3946 0.6337 26 7 0.4578 -4.2252 -0.8237 27 6 1.1078 -3.0848 -1.0912 28 8 1.3252 -2.6951 -2.2222 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3633 0.8901 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6555 2.1315 0.0004 33 1 4.1152 2.1386 0.0091 34 1 6.1602 0.6952 0.4824 35 1 8.1795 -0.1624 -0.3222 36 1 9.0283 -2.3359 -3.5092 37 1 7.4648 -1.4998 -3.3550 38 1 8.9814 -0.6055 -3.0932 39 1 10.9710 -4.3498 -2.8405 40 1 4.1302 -2.1367 -0.0013 41 1 1.9399 -3.4479 1.7938 42 1 0.3877 -2.5518 1.7939 43 1 0.8680 -5.3060 0.9479 44 1 -0.6845 -4.4103 0.9476 45 1 0.1042 -4.8391 -1.4861 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490322756.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:47:19 Heat of formation + Delta-G solvation = -34.290451 kcal Electronic energy + Delta-G solvation = -28505.552130 eV Core-core repulsion = 24522.641591 eV Total energy + Delta-G solvation = -3982.910539 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.39767 -41.51190 -39.79982 -37.55125 -37.07969 -36.13753 -34.78161 -34.39138 -32.57168 -31.06879 -30.59735 -29.61926 -27.41190 -27.14791 -24.72961 -23.84506 -23.67156 -22.60366 -21.62046 -21.27988 -19.89447 -19.17622 -18.31877 -17.95753 -17.62916 -17.15616 -16.77385 -16.60348 -16.27901 -16.00980 -15.76337 -15.31994 -15.26578 -15.09286 -14.82224 -14.46571 -14.43998 -14.40801 -13.84028 -13.46754 -13.28456 -13.18088 -13.12792 -13.00438 -12.86503 -12.74126 -12.64454 -12.38507 -12.29219 -12.15783 -11.57600 -11.30499 -11.14987 -11.00951 -10.62045 -10.49231 -9.88265 -9.81073 -9.67865 -8.92947 -8.18851 -6.37429 0.18055 0.36834 1.43914 1.47300 1.48295 1.55190 1.75721 1.98549 2.12058 2.41124 2.72759 2.99765 3.11410 3.42628 3.51602 3.93030 4.00829 4.09854 4.18817 4.33301 4.37564 4.49420 4.58353 4.66624 4.73605 4.79755 4.81536 4.88482 4.89584 4.91960 5.05593 5.10744 5.26005 5.31910 5.38426 5.47703 5.55764 5.59808 5.63869 5.74989 5.81993 6.03368 6.05684 6.22948 6.24877 6.42133 6.70323 7.21246 7.31831 7.48979 7.65255 8.87740 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015742 B = 0.002853 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.223171 B = 9813.022025 C =10802.592060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.103 4.103 3 C -0.086 4.086 4 C -0.129 4.129 5 C 0.154 3.846 6 N -0.673 5.673 7 C 0.689 3.311 8 O -0.629 6.629 9 N -0.712 5.712 10 C 0.290 3.710 11 H -0.005 1.005 12 C -0.134 4.134 13 C -0.548 4.548 14 H 0.078 0.922 15 C 0.013 3.987 16 N -0.919 5.919 17 Si 0.978 3.022 18 H -0.269 1.269 19 H -0.287 1.287 20 H -0.262 1.262 21 C -0.137 4.137 22 C 0.158 3.842 23 N -0.590 5.590 24 C 0.085 3.915 25 C 0.096 3.904 26 N -0.733 5.733 27 C 0.688 3.312 28 O -0.639 6.639 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.040 0.960 32 H 0.172 0.828 33 H 0.164 0.836 34 H 0.425 0.575 35 H 0.405 0.595 36 H 0.068 0.932 37 H 0.004 0.996 38 H 0.043 0.957 39 H 0.266 0.734 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.115 0.885 43 H 0.101 0.899 44 H 0.123 0.877 45 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.832 8.420 14.089 27.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.106 4.106 3 C -0.105 4.105 4 C -0.149 4.149 5 C 0.058 3.942 6 N -0.322 5.322 7 C 0.389 3.611 8 O -0.509 6.509 9 N -0.364 5.364 10 C 0.186 3.814 11 H 0.013 0.987 12 C -0.193 4.193 13 C -0.586 4.586 14 H 0.096 0.904 15 C -0.187 4.187 16 N -0.557 5.557 17 Si 0.802 3.198 18 H -0.194 1.194 19 H -0.213 1.213 20 H -0.187 1.187 21 C -0.160 4.160 22 C 0.068 3.932 23 N -0.324 5.324 24 C -0.035 4.035 25 C -0.027 4.027 26 N -0.395 5.395 27 C 0.389 3.611 28 O -0.520 6.520 29 H 0.113 0.887 30 H 0.102 0.898 31 H 0.060 0.940 32 H 0.190 0.810 33 H 0.181 0.819 34 H 0.264 0.736 35 H 0.241 0.759 36 H 0.087 0.913 37 H 0.023 0.977 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.118 0.882 41 H 0.102 0.898 42 H 0.133 0.867 43 H 0.119 0.881 44 H 0.141 0.859 45 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -22.014 7.716 12.946 26.679 hybrid contribution 1.571 -0.579 -0.213 1.688 sum -20.443 7.137 12.732 25.119 Atomic orbital electron populations 1.20655 0.88940 1.02524 1.03345 1.20410 0.97943 0.91649 1.00584 1.21126 0.92916 0.98027 0.98447 1.21294 0.94905 0.96299 1.02396 1.17577 0.81873 0.93938 1.00845 1.42390 1.04417 1.31476 1.53958 1.16342 0.82782 0.82451 0.79478 1.90901 1.68681 1.37550 1.53815 1.45410 1.03384 1.30484 1.57155 1.18229 0.90014 0.84757 0.88375 0.98726 1.21931 0.97113 1.00954 0.99328 1.21501 0.95708 1.21647 1.19708 0.90427 1.25865 1.03466 0.94543 0.94860 1.70067 1.37269 1.22440 1.25972 0.85317 0.78017 0.78199 0.78299 1.19390 1.21273 1.18658 1.21353 0.93996 0.98268 1.02357 1.16857 0.88539 0.84142 1.03692 1.44203 1.58575 1.22200 1.07405 1.22853 1.00624 0.92643 0.87426 1.22699 1.03749 0.98186 0.78068 1.45048 1.61105 1.23009 1.10313 1.16286 0.78935 0.81940 0.83988 1.90941 1.64415 1.73119 1.23534 0.88711 0.89799 0.94041 0.81045 0.81863 0.73642 0.75921 0.91341 0.97712 0.93792 0.92497 0.88237 0.89772 0.86728 0.88080 0.85924 0.72003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.70 9.76 71.24 0.70 -1.01 16 2 C -0.10 -2.48 5.90 -19.72 -0.12 -2.59 16 3 C -0.09 -1.68 9.68 22.23 0.22 -1.46 16 4 C -0.13 -2.83 9.96 22.41 0.22 -2.61 16 5 C 0.15 4.83 6.30 38.12 0.24 5.07 16 6 N -0.67 -21.30 5.34 -317.23 -1.70 -22.99 16 7 C 0.69 30.26 8.37 179.05 1.50 31.76 16 8 O -0.63 -34.70 13.44 -3.98 -0.05 -34.76 16 9 N -0.71 -30.88 5.07 -461.41 -2.34 -33.22 16 10 C 0.29 15.73 2.56 44.24 0.11 15.84 16 11 H -0.01 -0.33 7.58 -2.39 -0.02 -0.35 16 12 C -0.13 -7.24 9.26 71.98 0.67 -6.58 16 13 C -0.55 -29.44 8.73 25.60 0.22 -29.22 16 14 H 0.08 3.82 7.74 -2.91 -0.02 3.80 16 15 C 0.01 0.69 5.30 84.66 0.45 1.14 16 16 N -0.92 -54.11 11.31 21.45 0.24 -53.87 16 17 Si 0.98 42.27 29.54 68.60 2.03 44.30 16 18 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 19 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 20 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 21 C -0.14 -5.11 8.61 22.51 0.19 -4.91 16 22 C 0.16 4.96 5.41 38.13 0.21 5.16 16 23 N -0.59 -16.64 2.07 -646.81 -1.34 -17.98 16 24 C 0.09 1.35 7.62 86.65 0.66 2.01 16 25 C 0.10 1.08 8.06 86.65 0.70 1.78 16 26 N -0.73 -15.58 6.38 -477.31 -3.04 -18.62 16 27 C 0.69 22.85 7.97 179.57 1.43 24.28 16 28 O -0.64 -29.16 17.65 -3.99 -0.07 -29.23 16 29 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.08 1.16 8.08 -2.39 -0.02 1.14 16 31 H 0.04 0.91 6.96 -2.39 -0.02 0.89 16 32 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 33 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 34 H 0.42 9.37 8.84 -92.72 -0.82 8.55 16 35 H 0.41 14.21 8.56 -92.71 -0.79 13.42 16 36 H 0.07 4.00 6.06 -2.39 -0.01 3.99 16 37 H 0.00 0.21 8.14 -2.38 -0.02 0.19 16 38 H 0.04 2.15 8.14 -2.38 -0.02 2.13 16 39 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 40 H 0.10 4.59 6.22 -2.91 -0.02 4.57 16 41 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 44 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.44 7.75 8.96 -92.71 -0.83 6.92 16 Total: -1.00 -91.40 376.04 -0.26 -91.66 By element: Atomic # 1 Polarization: 37.42 SS G_CDS: -1.39 Total: 36.03 kcal Atomic # 6 Polarization: 31.28 SS G_CDS: 7.40 Total: 38.68 kcal Atomic # 7 Polarization: -138.51 SS G_CDS: -8.17 Total: -146.69 kcal Atomic # 8 Polarization: -63.86 SS G_CDS: -0.12 Total: -63.99 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -91.40 -0.26 -91.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490322756.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.372 kcal (2) G-P(sol) polarization free energy of solvation -91.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds