Wall clock time and date at job start Tue Mar 31 2020 16:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38183 * 119.96578 * 2 1 4 4 C 1.38145 * 120.14001 * 180.25978 * 3 2 1 5 5 C 1.38936 * 120.06728 * 359.76199 * 4 3 2 6 6 N 1.39946 * 120.03103 * 180.02562 * 5 4 3 7 7 C 1.34783 * 119.99560 * 144.88108 * 6 5 4 8 8 O 1.21584 * 120.00088 * 4.58896 * 7 6 5 9 9 N 1.34780 * 119.99485 * 184.58060 * 7 6 5 10 10 C 1.46498 * 120.00380 * 0.02562 * 9 7 6 11 11 C 1.46503 * 119.99378 * 180.02562 * 9 7 6 12 12 C 1.50700 * 109.47187 * 90.00570 * 11 9 7 13 13 H 1.07998 * 119.99874 * 359.97438 * 12 11 9 14 14 C 1.37875 * 120.00371 * 179.97438 * 12 11 9 15 15 N 1.31522 * 119.99527 * 359.97438 * 14 12 11 16 16 Si 1.86792 * 120.00315 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47204 * 60.00123 * 16 14 12 18 18 H 1.48499 * 109.47376 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47273 * 299.99940 * 16 14 12 20 20 C 1.38720 * 119.93043 * 359.97438 * 5 4 3 21 21 C 1.38759 * 119.86266 * 359.97438 * 20 5 4 22 22 N 1.39940 * 120.03303 * 180.02562 * 21 20 5 23 23 C 1.47054 * 125.41321 * 90.00024 * 22 21 20 24 24 C 1.54104 * 103.86203 * 179.97438 * 23 22 21 25 25 N 1.47046 * 103.86334 * 359.97438 * 24 23 22 26 26 C 1.33946 * 125.40932 * 269.99979 * 22 21 20 27 27 O 1.21591 * 123.04155 * 0.02562 * 26 22 21 28 28 H 1.09005 * 109.46884 * 270.25193 * 1 2 3 29 29 H 1.08999 * 109.47504 * 30.24862 * 1 2 3 30 30 H 1.08997 * 109.47343 * 150.25409 * 1 2 3 31 31 H 1.07997 * 119.93450 * 359.97438 * 3 2 1 32 32 H 1.08000 * 119.96481 * 179.75043 * 4 3 2 33 33 H 0.96998 * 120.00129 * 324.88392 * 6 5 4 34 34 H 1.08997 * 109.46855 * 89.99721 * 10 9 7 35 35 H 1.08996 * 109.47107 * 209.99600 * 10 9 7 36 36 H 1.09004 * 109.46601 * 329.99811 * 10 9 7 37 37 H 1.09007 * 109.46666 * 209.99950 * 11 9 7 38 38 H 1.08998 * 109.47502 * 330.00217 * 11 9 7 39 39 H 0.96995 * 119.99584 * 179.97438 * 15 14 12 40 40 H 1.08000 * 120.06530 * 180.02562 * 20 5 4 41 41 H 1.09003 * 110.54505 * 61.40376 * 23 22 21 42 42 H 1.09001 * 110.54809 * 298.59194 * 23 22 21 43 43 H 1.09001 * 110.54746 * 118.59537 * 24 23 22 44 44 H 1.09009 * 110.54863 * 241.40247 * 24 23 22 45 45 H 0.96999 * 125.40757 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1971 1.1971 0.0000 4 6 3.5786 1.2013 -0.0054 5 6 4.2783 0.0010 -0.0059 6 7 5.6778 0.0062 -0.0108 7 6 6.3575 -0.9450 0.6599 8 8 5.7576 -1.8547 1.1993 9 7 7.7021 -0.8878 0.7324 10 6 8.4248 0.2084 0.0827 11 6 8.4409 -1.9221 1.4609 12 6 8.7913 -3.0461 0.5202 13 1 8.4930 -2.9953 -0.5165 14 6 9.4925 -4.1392 0.9830 15 7 9.8561 -4.2007 2.2455 16 14 9.9262 -5.5327 -0.1828 17 1 10.7673 -5.0091 -1.2890 18 1 10.6762 -6.5805 0.5553 19 1 8.6803 -6.1163 -0.7419 20 6 3.5883 -1.2024 -0.0004 21 6 2.2008 -1.2032 0.0061 22 7 1.5011 -2.4152 0.0122 23 6 1.0807 -3.1503 1.2144 24 6 0.3609 -4.3926 0.6546 25 7 0.4516 -4.2252 -0.8034 26 6 1.1080 -3.0898 -1.0761 27 8 1.3264 -2.7059 -2.2089 28 1 -0.3633 0.0045 1.0277 29 1 -0.3634 0.8877 -0.5177 30 1 -0.3634 -0.8922 -0.5099 31 1 1.6555 2.1314 -0.0004 32 1 4.1151 2.1386 -0.0095 33 1 6.1585 0.6943 -0.4969 34 1 8.5339 1.0368 0.7826 35 1 9.4108 -0.1389 -0.2258 36 1 7.8672 0.5429 -0.7922 37 1 9.3553 -1.4939 1.8719 38 1 7.8230 -2.3066 2.2723 39 1 10.3492 -4.9699 2.5712 40 1 4.1301 -2.1367 -0.0003 41 1 0.3956 -2.5480 1.8111 42 1 1.9478 -3.4442 1.8059 43 1 0.8706 -5.3037 0.9680 44 1 -0.6814 -4.4071 0.9737 45 1 0.0935 -4.8397 -1.4631 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490354721.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:47:04 Heat of formation + Delta-G solvation = 6.232315 kcal Electronic energy + Delta-G solvation = -28772.533188 eV Core-core repulsion = 24791.379848 eV Total energy + Delta-G solvation = -3981.153340 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.35554 -40.13638 -38.54861 -36.33992 -35.36453 -34.72326 -33.69999 -32.62972 -31.25176 -30.05924 -28.71046 -27.87137 -26.50953 -25.47615 -23.66096 -23.02636 -22.91572 -21.62979 -20.23623 -19.48355 -18.14687 -17.49289 -16.96898 -16.66368 -16.51957 -15.85973 -15.42911 -15.23469 -14.95695 -14.62368 -14.45467 -14.22208 -13.84680 -13.72626 -13.56314 -13.49711 -13.13971 -12.84703 -12.59926 -12.48745 -12.36461 -12.18765 -12.05823 -11.81748 -11.61288 -11.30796 -11.20066 -10.92895 -10.57481 -10.32162 -10.16372 -9.87400 -9.66733 -9.43182 -9.27495 -8.78467 -8.67304 -8.43829 -7.93036 -7.56468 -6.05065 -4.09782 1.27839 1.51172 2.47174 3.10057 3.20019 3.32204 3.36105 3.40879 3.58741 3.81361 3.99627 4.24152 4.39345 4.53433 4.71520 4.89055 5.01842 5.07884 5.16301 5.26152 5.28945 5.34808 5.46589 5.49859 5.54680 5.59203 5.65565 5.76922 5.84342 5.94084 5.95117 6.10956 6.34911 6.45573 6.47709 6.70209 6.81745 6.91368 7.02757 7.31242 7.33243 7.39849 7.47910 7.64922 7.92782 8.21846 8.55151 8.57967 8.90809 9.21049 9.55665 11.02736 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011532 B = 0.003628 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2427.496548 B = 7715.201216 C = 9379.403164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.103 4.103 3 C -0.096 4.096 4 C -0.144 4.144 5 C 0.182 3.818 6 N -0.696 5.696 7 C 0.698 3.302 8 O -0.569 6.569 9 N -0.612 5.612 10 C 0.084 3.916 11 C 0.260 3.740 12 C -0.528 4.528 13 H 0.056 0.944 14 C 0.062 3.938 15 N -0.895 5.895 16 Si 0.898 3.102 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.277 1.277 20 C -0.105 4.105 21 C 0.179 3.821 22 N -0.584 5.584 23 C 0.092 3.908 24 C 0.094 3.906 25 N -0.742 5.742 26 C 0.703 3.297 27 O -0.578 6.578 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.403 0.597 34 H 0.046 0.954 35 H 0.079 0.921 36 H 0.050 0.950 37 H 0.035 0.965 38 H 0.045 0.955 39 H 0.264 0.736 40 H 0.148 0.852 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.812 8.984 -1.521 20.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.106 4.106 3 C -0.115 4.115 4 C -0.165 4.165 5 C 0.085 3.915 6 N -0.346 5.346 7 C 0.400 3.600 8 O -0.445 6.445 9 N -0.347 5.347 10 C -0.061 4.061 11 C 0.141 3.859 12 C -0.567 4.567 13 H 0.075 0.925 14 C -0.140 4.140 15 N -0.534 5.534 16 Si 0.725 3.275 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.202 1.202 20 C -0.126 4.126 21 C 0.089 3.911 22 N -0.319 5.319 23 C -0.030 4.030 24 C -0.031 4.031 25 N -0.405 5.405 26 C 0.404 3.596 27 O -0.454 6.454 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.146 0.854 32 H 0.145 0.855 33 H 0.240 0.760 34 H 0.064 0.936 35 H 0.098 0.902 36 H 0.069 0.931 37 H 0.053 0.947 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.166 0.834 41 H 0.102 0.898 42 H 0.108 0.892 43 H 0.103 0.897 44 H 0.101 0.899 45 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -18.807 8.473 -1.499 20.682 hybrid contribution 0.575 -0.845 -1.001 1.430 sum -18.232 7.629 -2.500 19.921 Atomic orbital electron populations 1.20610 0.91213 1.02487 1.01648 1.19963 0.96200 0.92155 1.02261 1.20570 0.93160 0.96890 1.00929 1.20909 0.94328 0.96496 1.04788 1.17309 0.82337 0.93083 0.98803 1.42950 1.04092 1.32853 1.54666 1.15924 0.82472 0.81896 0.79745 1.90871 1.67391 1.34968 1.51296 1.47506 1.03297 1.28103 1.55786 1.21600 0.98592 0.89906 0.95977 1.19246 0.90693 0.84024 0.91916 1.21426 1.35327 1.03673 0.96274 0.92539 1.24912 0.95728 0.98095 0.95235 1.69923 1.38982 1.30612 1.13899 0.86565 0.78515 0.81667 0.80723 1.20240 1.21142 1.20209 1.21581 0.92746 0.99368 0.98945 1.16589 0.89024 0.82390 1.03119 1.44068 1.59262 1.22148 1.06392 1.22508 1.00114 0.91753 0.88626 1.22369 1.01337 0.98632 0.80780 1.45021 1.62219 1.25075 1.08151 1.15833 0.78595 0.80730 0.84422 1.90977 1.62275 1.71547 1.20600 0.91604 0.91675 0.92085 0.85412 0.85549 0.76012 0.93562 0.90238 0.93139 0.94731 0.93670 0.92653 0.83395 0.89831 0.89171 0.89667 0.89922 0.72895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.07 9.76 36.00 0.35 -0.72 16 2 C -0.10 -1.37 5.90 -104.40 -0.62 -1.98 16 3 C -0.10 -1.13 9.69 -39.64 -0.38 -1.51 16 4 C -0.14 -1.83 9.96 -39.36 -0.39 -2.22 16 5 C 0.18 2.96 6.30 -83.72 -0.53 2.43 16 6 N -0.70 -11.58 5.22 -14.24 -0.07 -11.66 16 7 C 0.70 15.01 8.12 -86.91 -0.71 14.31 16 8 O -0.57 -14.47 13.35 5.29 0.07 -14.40 16 9 N -0.61 -13.04 2.86 -188.74 -0.54 -13.58 16 10 C 0.08 1.29 10.24 59.85 0.61 1.91 16 11 C 0.26 6.80 5.16 -5.19 -0.03 6.77 16 12 C -0.53 -15.04 9.39 -34.44 -0.32 -15.36 16 13 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 14 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 15 N -0.90 -26.50 13.29 55.43 0.74 -25.76 16 16 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 C -0.10 -1.91 8.61 -39.21 -0.34 -2.25 16 21 C 0.18 2.84 5.41 -83.72 -0.45 2.39 16 22 N -0.58 -8.40 2.07 -118.27 -0.24 -8.64 16 23 C 0.09 0.93 7.62 -3.16 -0.02 0.91 16 24 C 0.09 0.71 8.06 -3.17 -0.03 0.69 16 25 N -0.74 -7.99 6.37 -64.70 -0.41 -8.40 16 26 C 0.70 10.97 7.97 -88.40 -0.70 10.26 16 27 O -0.58 -11.55 17.65 5.29 0.09 -11.46 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 30 H 0.06 0.72 6.96 -51.93 -0.36 0.36 16 31 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 32 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.40 5.28 6.52 -40.82 -0.27 5.01 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 36 H 0.05 0.63 6.30 -51.93 -0.33 0.30 16 37 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 38 H 0.05 1.33 7.42 -51.93 -0.39 0.94 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.15 3.24 6.22 -52.49 -0.33 2.91 16 41 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.08 0.40 8.14 -51.92 -0.42 -0.03 16 45 H 0.43 3.73 8.96 -40.82 -0.37 3.36 16 LS Contribution 377.01 15.07 5.68 5.68 Total: -1.00 -38.11 377.01 -9.58 -47.69 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -6.22 Total: 6.18 kcal Atomic # 6 Polarization: 20.95 SS G_CDS: -3.65 Total: 17.30 kcal Atomic # 7 Polarization: -67.51 SS G_CDS: -0.53 Total: -68.04 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: 0.16 Total: -25.85 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -38.11 -9.58 -47.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490354721.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.922 kcal (2) G-P(sol) polarization free energy of solvation -38.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds