Wall clock time and date at job start Tue Mar 31 2020 16:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38183 * 119.96578 * 2 1 4 4 C 1.38145 * 120.14001 * 180.25978 * 3 2 1 5 5 C 1.38936 * 120.06728 * 359.76199 * 4 3 2 6 6 N 1.39946 * 120.03103 * 180.02562 * 5 4 3 7 7 C 1.34783 * 119.99560 * 144.88108 * 6 5 4 8 8 O 1.21584 * 120.00088 * 4.58896 * 7 6 5 9 9 N 1.34780 * 119.99485 * 184.58060 * 7 6 5 10 10 C 1.46498 * 120.00380 * 0.02562 * 9 7 6 11 11 C 1.46503 * 119.99378 * 180.02562 * 9 7 6 12 12 C 1.50700 * 109.47187 * 90.00570 * 11 9 7 13 13 H 1.07998 * 119.99874 * 359.97438 * 12 11 9 14 14 C 1.37875 * 120.00371 * 179.97438 * 12 11 9 15 15 N 1.31522 * 119.99527 * 359.97438 * 14 12 11 16 16 Si 1.86792 * 120.00315 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47204 * 60.00123 * 16 14 12 18 18 H 1.48499 * 109.47376 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47273 * 299.99940 * 16 14 12 20 20 C 1.38720 * 119.93043 * 359.97438 * 5 4 3 21 21 C 1.38759 * 119.86266 * 359.97438 * 20 5 4 22 22 N 1.39940 * 120.03303 * 180.02562 * 21 20 5 23 23 C 1.47054 * 125.41321 * 90.00024 * 22 21 20 24 24 C 1.54104 * 103.86203 * 179.97438 * 23 22 21 25 25 N 1.47046 * 103.86334 * 359.97438 * 24 23 22 26 26 C 1.33946 * 125.40932 * 269.99979 * 22 21 20 27 27 O 1.21591 * 123.04155 * 0.02562 * 26 22 21 28 28 H 1.09005 * 109.46884 * 270.25193 * 1 2 3 29 29 H 1.08999 * 109.47504 * 30.24862 * 1 2 3 30 30 H 1.08997 * 109.47343 * 150.25409 * 1 2 3 31 31 H 1.07997 * 119.93450 * 359.97438 * 3 2 1 32 32 H 1.08000 * 119.96481 * 179.75043 * 4 3 2 33 33 H 0.96998 * 120.00129 * 324.88392 * 6 5 4 34 34 H 1.08997 * 109.46855 * 89.99721 * 10 9 7 35 35 H 1.08996 * 109.47107 * 209.99600 * 10 9 7 36 36 H 1.09004 * 109.46601 * 329.99811 * 10 9 7 37 37 H 1.09007 * 109.46666 * 209.99950 * 11 9 7 38 38 H 1.08998 * 109.47502 * 330.00217 * 11 9 7 39 39 H 0.96995 * 119.99584 * 179.97438 * 15 14 12 40 40 H 1.08000 * 120.06530 * 180.02562 * 20 5 4 41 41 H 1.09003 * 110.54505 * 61.40376 * 23 22 21 42 42 H 1.09001 * 110.54809 * 298.59194 * 23 22 21 43 43 H 1.09001 * 110.54746 * 118.59537 * 24 23 22 44 44 H 1.09009 * 110.54863 * 241.40247 * 24 23 22 45 45 H 0.96999 * 125.40757 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1971 1.1971 0.0000 4 6 3.5786 1.2013 -0.0054 5 6 4.2783 0.0010 -0.0059 6 7 5.6778 0.0062 -0.0108 7 6 6.3575 -0.9450 0.6599 8 8 5.7576 -1.8547 1.1993 9 7 7.7021 -0.8878 0.7324 10 6 8.4248 0.2084 0.0827 11 6 8.4409 -1.9221 1.4609 12 6 8.7913 -3.0461 0.5202 13 1 8.4930 -2.9953 -0.5165 14 6 9.4925 -4.1392 0.9830 15 7 9.8561 -4.2007 2.2455 16 14 9.9262 -5.5327 -0.1828 17 1 10.7673 -5.0091 -1.2890 18 1 10.6762 -6.5805 0.5553 19 1 8.6803 -6.1163 -0.7419 20 6 3.5883 -1.2024 -0.0004 21 6 2.2008 -1.2032 0.0061 22 7 1.5011 -2.4152 0.0122 23 6 1.0807 -3.1503 1.2144 24 6 0.3609 -4.3926 0.6546 25 7 0.4516 -4.2252 -0.8034 26 6 1.1080 -3.0898 -1.0761 27 8 1.3264 -2.7059 -2.2089 28 1 -0.3633 0.0045 1.0277 29 1 -0.3634 0.8877 -0.5177 30 1 -0.3634 -0.8922 -0.5099 31 1 1.6555 2.1314 -0.0004 32 1 4.1151 2.1386 -0.0095 33 1 6.1585 0.6943 -0.4969 34 1 8.5339 1.0368 0.7826 35 1 9.4108 -0.1389 -0.2258 36 1 7.8672 0.5429 -0.7922 37 1 9.3553 -1.4939 1.8719 38 1 7.8230 -2.3066 2.2723 39 1 10.3492 -4.9699 2.5712 40 1 4.1301 -2.1367 -0.0003 41 1 0.3956 -2.5480 1.8111 42 1 1.9478 -3.4442 1.8059 43 1 0.8706 -5.3037 0.9680 44 1 -0.6814 -4.4071 0.9737 45 1 0.0935 -4.8397 -1.4631 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490354721.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:47:03 Heat of formation + Delta-G solvation = -21.515772 kcal Electronic energy + Delta-G solvation = -28773.736435 eV Core-core repulsion = 24791.379848 eV Total energy + Delta-G solvation = -3982.356587 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.41798 -41.57897 -39.81228 -37.53713 -36.87842 -36.27171 -34.91679 -34.57533 -32.45744 -31.08296 -29.78635 -29.62654 -27.74915 -26.95547 -25.02762 -24.54257 -23.85078 -22.81058 -21.42139 -21.00653 -19.40414 -18.82352 -18.69295 -18.16566 -17.67463 -17.15574 -16.78413 -16.62122 -16.39314 -16.08251 -15.72792 -15.28855 -15.23470 -14.91740 -14.82728 -14.61005 -14.45691 -14.32927 -13.91588 -13.52027 -13.46468 -13.31257 -13.22792 -13.20657 -13.00721 -12.83704 -12.65443 -12.52756 -12.34204 -12.20272 -11.78186 -11.62629 -11.21715 -10.95016 -10.66341 -10.49637 -9.82179 -9.70101 -9.56160 -8.91741 -8.24219 -6.39096 0.18280 0.36776 1.33285 1.37077 1.44281 1.47786 1.72022 1.96058 2.11983 2.36025 2.72715 2.94142 3.03627 3.08178 3.48865 3.92305 4.00149 4.06730 4.18208 4.26159 4.31776 4.35467 4.48835 4.57749 4.63545 4.67879 4.79429 4.81294 4.82033 4.86573 4.89940 4.95593 5.10731 5.16693 5.30253 5.34023 5.47868 5.51568 5.60881 5.74077 5.76837 6.02326 6.03624 6.06369 6.23165 6.38665 6.68853 7.02179 7.27724 7.47177 7.59711 8.81859 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011532 B = 0.003628 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2427.496548 B = 7715.201216 C = 9379.403164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.103 4.103 3 C -0.085 4.085 4 C -0.128 4.128 5 C 0.153 3.847 6 N -0.675 5.675 7 C 0.691 3.309 8 O -0.620 6.620 9 N -0.620 5.620 10 C 0.078 3.922 11 C 0.278 3.722 12 C -0.546 4.546 13 H 0.047 0.953 14 C 0.013 3.987 15 N -0.924 5.924 16 Si 0.963 3.037 17 H -0.261 1.261 18 H -0.273 1.273 19 H -0.284 1.284 20 C -0.139 4.139 21 C 0.159 3.841 22 N -0.589 5.589 23 C 0.084 3.916 24 C 0.099 3.901 25 N -0.730 5.730 26 C 0.691 3.309 27 O -0.634 6.634 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.043 0.957 31 H 0.174 0.826 32 H 0.166 0.834 33 H 0.421 0.579 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.032 0.968 38 H 0.000 1.000 39 H 0.268 0.732 40 H 0.095 0.905 41 H 0.113 0.887 42 H 0.072 0.928 43 H 0.098 0.902 44 H 0.125 0.875 45 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.657 11.059 -1.956 23.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.105 4.105 3 C -0.104 4.104 4 C -0.148 4.148 5 C 0.057 3.943 6 N -0.327 5.327 7 C 0.393 3.607 8 O -0.500 6.500 9 N -0.355 5.355 10 C -0.064 4.064 11 C 0.156 3.844 12 C -0.585 4.585 13 H 0.065 0.935 14 C -0.187 4.187 15 N -0.564 5.564 16 Si 0.787 3.213 17 H -0.185 1.185 18 H -0.198 1.198 19 H -0.210 1.210 20 C -0.162 4.162 21 C 0.068 3.932 22 N -0.323 5.323 23 C -0.038 4.038 24 C -0.025 4.025 25 N -0.392 5.392 26 C 0.392 3.608 27 O -0.515 6.515 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.062 0.938 31 H 0.192 0.808 32 H 0.183 0.817 33 H 0.261 0.739 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.050 0.950 38 H 0.018 0.982 39 H 0.077 0.923 40 H 0.114 0.886 41 H 0.131 0.869 42 H 0.090 0.910 43 H 0.116 0.884 44 H 0.143 0.857 45 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -20.672 10.587 -1.931 23.305 hybrid contribution 1.058 -1.448 -0.816 1.970 sum -19.614 9.139 -2.747 21.812 Atomic orbital electron populations 1.20650 0.88858 1.02766 1.03157 1.20406 0.97974 0.91564 1.00596 1.21135 0.92875 0.98015 0.98348 1.21293 0.94917 0.96192 1.02390 1.17610 0.81883 0.93964 1.00861 1.42569 1.04436 1.31888 1.53775 1.16138 0.82488 0.82227 0.79841 1.90840 1.68503 1.37236 1.53422 1.47375 1.03554 1.28590 1.55950 1.21911 0.98159 0.88731 0.97644 1.18689 0.89886 0.84938 0.90885 1.21676 1.35624 1.05034 0.96160 0.93485 1.25766 0.95481 1.00522 0.96891 1.70027 1.39392 1.31519 1.15463 0.85545 0.78088 0.78595 0.79026 1.18524 1.19803 1.20985 1.21363 0.94113 0.98273 1.02414 1.16856 0.88422 0.84175 1.03715 1.44209 1.58613 1.22103 1.07378 1.22804 1.00281 0.93010 0.87658 1.22648 1.03661 0.97778 0.78375 1.45013 1.60706 1.23488 1.10019 1.16192 0.78921 0.81789 0.83930 1.90909 1.64658 1.73207 1.22766 0.89318 0.89381 0.93770 0.80825 0.81696 0.73857 0.90528 0.90820 0.89783 0.94990 0.98163 0.92266 0.88637 0.86908 0.90985 0.88421 0.85669 0.71801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.75 9.76 71.23 0.70 -1.05 16 2 C -0.10 -2.54 5.90 -19.72 -0.12 -2.66 16 3 C -0.09 -1.68 9.69 22.23 0.22 -1.47 16 4 C -0.13 -2.88 9.96 22.42 0.22 -2.65 16 5 C 0.15 5.02 6.30 38.13 0.24 5.26 16 6 N -0.68 -22.65 5.22 -317.23 -1.65 -24.31 16 7 C 0.69 31.20 8.12 179.05 1.45 32.66 16 8 O -0.62 -34.20 13.35 -3.98 -0.05 -34.25 16 9 N -0.62 -27.30 2.86 -869.30 -2.48 -29.78 16 10 C 0.08 2.32 10.24 127.77 1.31 3.63 16 11 C 0.28 15.26 5.16 85.63 0.44 15.70 16 12 C -0.55 -32.37 9.39 25.60 0.24 -32.13 16 13 H 0.05 2.81 7.81 -2.91 -0.02 2.78 16 14 C 0.01 0.75 5.46 84.65 0.46 1.21 16 15 N -0.92 -56.23 13.29 21.45 0.28 -55.95 16 16 Si 0.96 46.08 29.54 68.60 2.03 48.11 16 17 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 18 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 19 H -0.28 -13.85 7.11 99.48 0.71 -13.14 16 20 C -0.14 -5.45 8.61 22.51 0.19 -5.26 16 21 C 0.16 5.20 5.41 38.13 0.21 5.40 16 22 N -0.59 -17.55 2.07 -646.81 -1.34 -18.89 16 23 C 0.08 1.68 7.62 86.65 0.66 2.34 16 24 C 0.10 1.36 8.06 86.65 0.70 2.05 16 25 N -0.73 -15.57 6.37 -477.34 -3.04 -18.61 16 26 C 0.69 22.39 7.97 179.57 1.43 23.82 16 27 O -0.63 -26.76 17.65 -4.00 -0.07 -26.83 16 28 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 29 H 0.09 1.19 8.09 -2.39 -0.02 1.17 16 30 H 0.04 0.96 6.96 -2.39 -0.02 0.94 16 31 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 32 H 0.17 2.42 8.06 -2.91 -0.02 2.40 16 33 H 0.42 10.38 6.52 -92.71 -0.60 9.78 16 34 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.07 2.30 8.07 -2.39 -0.02 2.28 16 36 H 0.08 1.92 6.30 -2.38 -0.02 1.90 16 37 H 0.03 1.75 8.07 -2.38 -0.02 1.73 16 38 H 0.00 0.01 7.42 -2.39 -0.02 0.00 16 39 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 40 H 0.10 4.70 6.22 -2.91 -0.02 4.69 16 41 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.13 0.75 8.14 -2.38 -0.02 0.73 16 45 H 0.44 7.46 8.96 -92.71 -0.83 6.63 16 Total: -1.00 -92.41 377.01 1.63 -90.79 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: -0.40 Total: 22.85 kcal Atomic # 6 Polarization: 38.52 SS G_CDS: 8.36 Total: 46.87 kcal Atomic # 7 Polarization: -139.30 SS G_CDS: -8.23 Total: -147.53 kcal Atomic # 8 Polarization: -60.96 SS G_CDS: -0.12 Total: -61.08 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -92.41 1.63 -90.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490354721.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.271 kcal (2) G-P(sol) polarization free energy of solvation -92.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds