Wall clock time and date at job start Tue Mar 31 2020 17:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34514 * 125.79114 * 2 1 4 4 C 1.41381 * 106.84002 * 180.02562 * 3 2 1 5 5 C 1.34516 * 106.84238 * 0.02562 * 4 3 2 6 6 C 1.50701 * 125.79092 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.46819 * 89.99295 * 6 5 4 8 8 N 1.46505 * 109.47069 * 179.97438 * 7 6 5 9 9 C 1.34775 * 120.00267 * 180.02562 * 8 7 6 10 10 O 1.21596 * 119.99612 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99859 * 180.02562 * 9 8 7 12 12 C 1.40197 * 119.99701 * 180.02562 * 11 9 8 13 13 C 1.40400 * 125.97326 * 0.22510 * 12 11 9 14 14 C 1.35244 * 107.86833 * 180.14908 * 13 12 11 15 15 C 1.50703 * 126.07226 * 179.90760 * 14 13 12 16 16 N 1.34968 * 107.85703 * 359.64215 * 14 13 12 17 17 C 1.46496 * 125.97468 * 180.21191 * 16 14 13 18 18 C 1.50702 * 109.47635 * 89.99791 * 17 16 14 19 19 H 1.07999 * 119.99790 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99972 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00160 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99693 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46758 * 90.00001 * 22 20 18 24 24 H 1.48493 * 109.46930 * 210.00007 * 22 20 18 25 25 H 1.48497 * 109.46960 * 330.00117 * 22 20 18 26 26 N 1.31208 * 125.97218 * 179.97438 * 12 11 9 27 27 O 1.34300 * 108.41925 * 0.25749 * 5 4 3 28 28 H 1.08997 * 109.47071 * 89.99783 * 1 2 3 29 29 H 1.08999 * 109.47192 * 210.00335 * 1 2 3 30 30 H 1.08995 * 109.46896 * 330.00234 * 1 2 3 31 31 H 1.07998 * 126.57626 * 0.05134 * 3 2 1 32 32 H 1.08004 * 126.57664 * 180.02562 * 4 3 2 33 33 H 1.09004 * 109.46867 * 329.99751 * 6 5 4 34 34 H 1.09000 * 109.47171 * 209.99718 * 6 5 4 35 35 H 1.09004 * 109.47028 * 60.00556 * 7 6 5 36 36 H 1.09000 * 109.47595 * 300.00163 * 7 6 5 37 37 H 0.97005 * 119.99515 * 0.02562 * 8 7 6 38 38 H 0.96995 * 120.00439 * 359.97438 * 11 9 8 39 39 H 1.08001 * 126.06886 * 0.03560 * 13 12 11 40 40 H 1.09002 * 109.47152 * 269.68666 * 15 14 13 41 41 H 1.09001 * 109.46980 * 149.68766 * 15 14 13 42 42 H 1.09004 * 109.47113 * 29.68747 * 15 14 13 43 43 H 1.09001 * 109.47030 * 210.00125 * 17 16 14 44 44 H 1.09005 * 109.47259 * 329.99077 * 17 16 14 45 45 H 0.96997 * 120.00168 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6320 -0.0006 5 6 3.5814 -0.7123 -0.0015 6 6 4.7706 -1.6380 -0.0019 7 6 5.1727 -1.9521 1.4405 8 7 6.3284 -2.8525 1.4403 9 6 6.8596 -3.2676 2.6073 10 8 6.3793 -2.8951 3.6604 11 7 7.9230 -4.0956 2.6069 12 6 8.4752 -4.5278 3.8209 13 6 8.0204 -4.1818 5.1034 14 6 8.8172 -4.7975 6.0063 15 6 8.6952 -4.7058 7.5056 16 7 9.7373 -5.5134 5.3262 17 6 10.7946 -6.3377 5.9166 18 6 10.2842 -7.7413 6.1178 19 1 9.2731 -7.9939 5.8346 20 6 11.1081 -8.7029 6.6634 21 7 12.3395 -8.3954 7.0078 22 14 10.4750 -10.4425 6.9134 23 1 10.7522 -11.2495 5.6980 24 1 11.1586 -11.0550 8.0807 25 1 9.0111 -10.4059 7.1601 26 7 9.5045 -5.3300 3.9572 27 8 2.2925 -1.0895 -0.0072 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.9666 2.1204 0.0008 32 1 4.5213 1.2433 -0.0004 33 1 5.6041 -1.1585 -0.5152 34 1 4.5107 -2.5632 -0.5163 35 1 4.3392 -2.4315 1.9539 36 1 5.4326 -1.0269 1.9550 37 1 6.7113 -3.1499 0.6000 38 1 8.3059 -4.3930 1.7669 39 1 7.1840 -3.5369 5.3289 40 1 9.2977 -3.8732 7.8689 41 1 9.0480 -5.6334 7.9563 42 1 7.6517 -4.5443 7.7761 43 1 11.6561 -6.3566 5.2490 44 1 11.0893 -5.9169 6.8780 45 1 12.9189 -9.0717 7.3919 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000540814041.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:22 Heat of formation + Delta-G solvation = 57.618114 kcal Electronic energy + Delta-G solvation = -26623.061056 eV Core-core repulsion = 22644.135971 eV Total energy + Delta-G solvation = -3978.925085 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.93476 -40.74066 -39.61319 -36.07497 -34.70490 -33.52426 -33.44355 -32.99612 -31.42613 -30.88071 -30.27623 -26.82689 -26.33104 -26.02485 -23.59773 -22.83644 -22.07256 -21.52296 -20.52369 -19.86171 -19.57194 -17.83320 -16.96951 -16.67048 -16.50597 -16.23871 -15.92499 -15.50833 -14.92775 -14.79545 -14.45459 -14.36804 -14.11417 -13.95943 -13.52955 -13.43394 -13.14791 -12.98667 -12.80108 -12.45601 -12.42332 -12.34147 -12.28041 -12.10923 -11.71184 -11.63369 -11.37876 -11.06354 -10.82734 -10.42238 -10.24128 -10.20596 -10.00523 -9.65338 -9.52187 -9.26082 -8.63217 -8.62863 -7.88674 -7.37997 -6.23902 -4.31540 1.32023 2.19877 2.34292 2.61837 2.66957 3.11515 3.22680 3.28853 3.33702 3.61363 3.85734 4.18701 4.30974 4.39359 4.47817 4.51969 4.66088 4.70118 4.97557 5.01929 5.03735 5.09539 5.28294 5.41479 5.43172 5.50605 5.61811 5.68371 5.74780 5.81488 5.97368 6.13415 6.18041 6.21384 6.25158 6.52235 6.59710 6.66760 6.82995 6.98012 7.06975 7.14465 7.54833 7.69075 7.90843 7.95571 8.10001 8.59511 8.69922 8.78224 9.34788 10.83168 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026084 B = 0.001723 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.200295 B =16250.289394 C =16384.969963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.013 4.013 3 C -0.213 4.213 4 C -0.199 4.199 5 C -0.012 4.012 6 C -0.050 4.050 7 C 0.144 3.856 8 N -0.746 5.746 9 C 0.713 3.287 10 O -0.564 6.564 11 N -0.643 5.643 12 C 0.282 3.718 13 C -0.289 4.289 14 C 0.091 3.909 15 C -0.088 4.088 16 N -0.318 5.318 17 C 0.259 3.741 18 C -0.536 4.536 19 H 0.064 0.936 20 C 0.065 3.935 21 N -0.892 5.892 22 Si 0.906 3.094 23 H -0.278 1.278 24 H -0.283 1.283 25 H -0.272 1.272 26 N -0.324 5.324 27 O -0.173 6.173 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.147 0.853 32 H 0.149 0.851 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.397 0.603 38 H 0.406 0.594 39 H 0.160 0.840 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.052 0.948 44 H 0.054 0.946 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.278 17.536 -14.818 29.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.063 4.063 3 C -0.232 4.232 4 C -0.218 4.218 5 C -0.062 4.062 6 C -0.087 4.087 7 C 0.020 3.980 8 N -0.403 5.403 9 C 0.412 3.588 10 O -0.439 6.439 11 N -0.293 5.293 12 C 0.028 3.972 13 C -0.320 4.320 14 C -0.040 4.040 15 C -0.147 4.147 16 N -0.101 5.101 17 C 0.141 3.859 18 C -0.574 4.574 19 H 0.083 0.917 20 C -0.138 4.138 21 N -0.530 5.530 22 Si 0.733 3.267 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.197 1.197 26 N -0.155 5.155 27 O -0.070 6.070 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.107 0.893 31 H 0.165 0.835 32 H 0.167 0.833 33 H 0.120 0.880 34 H 0.108 0.892 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.231 0.769 38 H 0.241 0.759 39 H 0.177 0.823 40 H 0.089 0.911 41 H 0.101 0.899 42 H 0.094 0.906 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.686 16.763 -14.314 28.261 hybrid contribution -0.287 -0.638 -0.451 0.832 sum -17.973 16.125 -14.766 28.304 Atomic orbital electron populations 1.20318 0.85090 1.04205 1.03492 1.22473 0.94047 0.84130 1.05692 1.21582 0.92716 0.99444 1.09459 1.21613 0.98361 0.93797 1.08030 1.21954 0.82878 0.94222 1.07142 1.20251 0.92097 0.98717 0.97645 1.21144 0.87712 0.93919 0.95245 1.44939 1.34996 1.53238 1.07146 1.15578 0.79797 0.79150 0.84230 1.90887 1.63052 1.60394 1.29581 1.41366 1.31659 1.49346 1.06937 1.18656 0.95183 0.97829 0.85521 1.21242 1.08068 1.13605 0.89096 1.21057 0.91963 0.95255 0.95746 1.20374 1.02644 1.03377 0.88275 1.48958 1.24980 1.34973 1.01163 1.19673 0.83761 0.88849 0.93614 1.21341 0.99883 0.93608 1.42606 0.91740 1.24926 0.94648 0.99373 0.94834 1.69919 1.06383 1.34821 1.41844 0.86361 0.79106 0.83388 0.77871 1.20372 1.20889 1.19657 1.77238 1.18881 1.22354 0.96977 1.83963 1.16302 1.35160 1.71549 0.90124 0.90437 0.89290 0.83472 0.83305 0.88025 0.89211 0.90968 0.90778 0.76868 0.75917 0.82255 0.91117 0.89941 0.90641 0.93039 0.92802 0.92282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.35 10.42 36.01 0.38 0.02 16 2 C -0.01 -0.11 7.32 -35.62 -0.26 -0.37 16 3 C -0.21 -1.71 10.81 -39.70 -0.43 -2.14 16 4 C -0.20 -1.64 10.81 -39.70 -0.43 -2.07 16 5 C -0.01 -0.10 6.57 -35.62 -0.23 -0.33 16 6 C -0.05 -0.31 5.86 -27.88 -0.16 -0.47 16 7 C 0.14 1.29 5.66 -4.04 -0.02 1.27 16 8 N -0.75 -7.18 5.56 -65.22 -0.36 -7.54 16 9 C 0.71 10.60 8.53 -86.92 -0.74 9.85 16 10 O -0.56 -10.52 13.47 5.28 0.07 -10.45 16 11 N -0.64 -10.05 5.46 -15.51 -0.08 -10.14 16 12 C 0.28 5.83 8.11 -154.36 -1.25 4.58 16 13 C -0.29 -6.11 9.52 -39.83 -0.38 -6.49 16 14 C 0.09 1.96 6.93 -82.28 -0.57 1.39 16 15 C -0.09 -1.55 9.89 36.01 0.36 -1.19 16 16 N -0.32 -7.65 3.59 -58.32 -0.21 -7.86 16 17 C 0.26 6.69 5.81 -5.20 -0.03 6.66 16 18 C -0.54 -14.85 9.39 -34.44 -0.32 -15.18 16 19 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 20 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 21 N -0.89 -25.12 13.29 55.43 0.74 -24.38 16 22 Si 0.91 21.21 29.54 -169.99 -5.02 16.19 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 26 N -0.32 -7.55 12.59 31.44 0.40 -7.16 16 27 O -0.17 -1.71 10.65 5.70 0.06 -1.65 16 28 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 32 H 0.15 0.97 8.06 -52.48 -0.42 0.54 16 33 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.40 2.44 8.49 -40.82 -0.35 2.10 16 38 H 0.41 4.96 8.84 -40.82 -0.36 4.60 16 39 H 0.16 3.33 5.91 -52.49 -0.31 3.02 16 40 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.08 1.54 7.71 -51.93 -0.40 1.14 16 42 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 44 H 0.05 1.38 7.65 -51.93 -0.40 0.98 16 45 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 388.80 15.07 5.86 5.86 Total: -1.00 -35.03 388.80 -9.19 -44.22 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -6.43 Total: 5.68 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -4.20 Total: -2.78 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: 0.48 Total: -57.07 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.13 Total: -12.10 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.03 -9.19 -44.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000540814041.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.841 kcal (2) G-P(sol) polarization free energy of solvation -35.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds