Wall clock time and date at job start Tue Mar 31 2020 17:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34514 * 125.79114 * 2 1 4 4 C 1.41381 * 106.84002 * 180.02562 * 3 2 1 5 5 C 1.34516 * 106.84238 * 0.02562 * 4 3 2 6 6 C 1.50701 * 125.79092 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.46819 * 89.99295 * 6 5 4 8 8 N 1.46505 * 109.47069 * 179.97438 * 7 6 5 9 9 C 1.34775 * 120.00267 * 180.02562 * 8 7 6 10 10 O 1.21596 * 119.99612 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99859 * 180.02562 * 9 8 7 12 12 C 1.40197 * 119.99701 * 180.02562 * 11 9 8 13 13 C 1.40400 * 125.97326 * 0.22510 * 12 11 9 14 14 C 1.35244 * 107.86833 * 180.14908 * 13 12 11 15 15 C 1.50703 * 126.07226 * 179.90760 * 14 13 12 16 16 N 1.34968 * 107.85703 * 359.64215 * 14 13 12 17 17 C 1.46496 * 125.97468 * 180.21191 * 16 14 13 18 18 C 1.50702 * 109.47635 * 89.99791 * 17 16 14 19 19 H 1.07999 * 119.99790 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99972 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00160 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99693 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46758 * 90.00001 * 22 20 18 24 24 H 1.48493 * 109.46930 * 210.00007 * 22 20 18 25 25 H 1.48497 * 109.46960 * 330.00117 * 22 20 18 26 26 N 1.31208 * 125.97218 * 179.97438 * 12 11 9 27 27 O 1.34300 * 108.41925 * 0.25749 * 5 4 3 28 28 H 1.08997 * 109.47071 * 89.99783 * 1 2 3 29 29 H 1.08999 * 109.47192 * 210.00335 * 1 2 3 30 30 H 1.08995 * 109.46896 * 330.00234 * 1 2 3 31 31 H 1.07998 * 126.57626 * 0.05134 * 3 2 1 32 32 H 1.08004 * 126.57664 * 180.02562 * 4 3 2 33 33 H 1.09004 * 109.46867 * 329.99751 * 6 5 4 34 34 H 1.09000 * 109.47171 * 209.99718 * 6 5 4 35 35 H 1.09004 * 109.47028 * 60.00556 * 7 6 5 36 36 H 1.09000 * 109.47595 * 300.00163 * 7 6 5 37 37 H 0.97005 * 119.99515 * 0.02562 * 8 7 6 38 38 H 0.96995 * 120.00439 * 359.97438 * 11 9 8 39 39 H 1.08001 * 126.06886 * 0.03560 * 13 12 11 40 40 H 1.09002 * 109.47152 * 269.68666 * 15 14 13 41 41 H 1.09001 * 109.46980 * 149.68766 * 15 14 13 42 42 H 1.09004 * 109.47113 * 29.68747 * 15 14 13 43 43 H 1.09001 * 109.47030 * 210.00125 * 17 16 14 44 44 H 1.09005 * 109.47259 * 329.99077 * 17 16 14 45 45 H 0.96997 * 120.00168 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6320 -0.0006 5 6 3.5814 -0.7123 -0.0015 6 6 4.7706 -1.6380 -0.0019 7 6 5.1727 -1.9521 1.4405 8 7 6.3284 -2.8525 1.4403 9 6 6.8596 -3.2676 2.6073 10 8 6.3793 -2.8951 3.6604 11 7 7.9230 -4.0956 2.6069 12 6 8.4752 -4.5278 3.8209 13 6 8.0204 -4.1818 5.1034 14 6 8.8172 -4.7975 6.0063 15 6 8.6952 -4.7058 7.5056 16 7 9.7373 -5.5134 5.3262 17 6 10.7946 -6.3377 5.9166 18 6 10.2842 -7.7413 6.1178 19 1 9.2731 -7.9939 5.8346 20 6 11.1081 -8.7029 6.6634 21 7 12.3395 -8.3954 7.0078 22 14 10.4750 -10.4425 6.9134 23 1 10.7522 -11.2495 5.6980 24 1 11.1586 -11.0550 8.0807 25 1 9.0111 -10.4059 7.1601 26 7 9.5045 -5.3300 3.9572 27 8 2.2925 -1.0895 -0.0072 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.9666 2.1204 0.0008 32 1 4.5213 1.2433 -0.0004 33 1 5.6041 -1.1585 -0.5152 34 1 4.5107 -2.5632 -0.5163 35 1 4.3392 -2.4315 1.9539 36 1 5.4326 -1.0269 1.9550 37 1 6.7113 -3.1499 0.6000 38 1 8.3059 -4.3930 1.7669 39 1 7.1840 -3.5369 5.3289 40 1 9.2977 -3.8732 7.8689 41 1 9.0480 -5.6334 7.9563 42 1 7.6517 -4.5443 7.7761 43 1 11.6561 -6.3566 5.2490 44 1 11.0893 -5.9169 6.8780 45 1 12.9189 -9.0717 7.3919 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000540814041.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:21 Heat of formation + Delta-G solvation = 35.082893 kcal Electronic energy + Delta-G solvation = -26624.038257 eV Core-core repulsion = 22644.135971 eV Total energy + Delta-G solvation = -3979.902285 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.53441 -42.30056 -40.94134 -37.03067 -36.16732 -35.30739 -34.12268 -33.85021 -32.90226 -32.57561 -31.04439 -28.58114 -27.86143 -26.90478 -25.04602 -24.02659 -22.78404 -22.65096 -21.43492 -21.17603 -20.93386 -19.13688 -18.75914 -17.88188 -17.43963 -17.20533 -17.03276 -16.95597 -16.32306 -16.05143 -15.80958 -15.47089 -15.35886 -15.00619 -14.61530 -14.33384 -14.01379 -13.81344 -13.79484 -13.72795 -13.64379 -13.55958 -13.40771 -13.15066 -13.04553 -12.83476 -12.76139 -12.68480 -12.30705 -12.24489 -12.07146 -11.57967 -11.34516 -11.17223 -10.81302 -10.72887 -10.25484 -9.55154 -9.21146 -9.07066 -8.31576 -6.49405 0.69505 1.02618 1.11745 1.38358 1.39098 1.50677 1.66475 1.67495 1.93996 2.16330 2.36079 2.39161 2.97699 3.13499 3.75635 3.86647 3.90104 3.96602 4.14973 4.15056 4.17336 4.46588 4.49774 4.55989 4.71687 4.74929 4.77871 4.78632 4.86610 4.88813 4.90897 4.97412 5.01423 5.03197 5.13293 5.14509 5.22141 5.32449 5.41271 5.54829 5.65397 5.82269 5.87435 5.98273 6.23741 6.28251 6.62661 6.75790 7.14091 7.21542 7.41833 8.74020 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.026084 B = 0.001723 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.200295 B =16250.289394 C =16384.969963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.028 4.028 3 C -0.228 4.228 4 C -0.208 4.208 5 C -0.029 4.029 6 C -0.037 4.037 7 C 0.147 3.853 8 N -0.719 5.719 9 C 0.711 3.289 10 O -0.602 6.602 11 N -0.634 5.634 12 C 0.292 3.708 13 C -0.299 4.299 14 C 0.087 3.913 15 C -0.085 4.085 16 N -0.343 5.343 17 C 0.275 3.725 18 C -0.553 4.553 19 H 0.049 0.951 20 C 0.024 3.976 21 N -0.917 5.917 22 Si 0.970 3.030 23 H -0.274 1.274 24 H -0.270 1.270 25 H -0.270 1.270 26 N -0.359 5.359 27 O -0.194 6.194 28 H 0.093 0.907 29 H 0.077 0.923 30 H 0.105 0.895 31 H 0.164 0.836 32 H 0.164 0.836 33 H 0.128 0.872 34 H 0.102 0.898 35 H 0.053 0.947 36 H 0.066 0.934 37 H 0.418 0.582 38 H 0.423 0.577 39 H 0.165 0.835 40 H 0.093 0.907 41 H 0.067 0.933 42 H 0.100 0.900 43 H 0.025 0.975 44 H 0.052 0.948 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.537 17.918 -15.748 30.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.077 4.077 3 C -0.247 4.247 4 C -0.227 4.227 5 C -0.079 4.079 6 C -0.074 4.074 7 C 0.023 3.977 8 N -0.376 5.376 9 C 0.410 3.590 10 O -0.480 6.480 11 N -0.286 5.286 12 C 0.037 3.963 13 C -0.330 4.330 14 C -0.043 4.043 15 C -0.144 4.144 16 N -0.126 5.126 17 C 0.157 3.843 18 C -0.592 4.592 19 H 0.067 0.933 20 C -0.178 4.178 21 N -0.555 5.555 22 Si 0.794 3.206 23 H -0.200 1.200 24 H -0.195 1.195 25 H -0.195 1.195 26 N -0.189 5.189 27 O -0.092 6.092 28 H 0.112 0.888 29 H 0.096 0.904 30 H 0.124 0.876 31 H 0.182 0.818 32 H 0.182 0.818 33 H 0.146 0.854 34 H 0.120 0.880 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.256 0.744 38 H 0.261 0.739 39 H 0.182 0.818 40 H 0.111 0.889 41 H 0.086 0.914 42 H 0.119 0.881 43 H 0.043 0.957 44 H 0.070 0.930 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -18.956 17.167 -15.319 29.811 hybrid contribution 0.013 -0.618 -0.236 0.662 sum -18.943 16.548 -15.554 29.574 Atomic orbital electron populations 1.20475 0.83001 1.05030 1.04590 1.23166 0.95476 0.83909 1.05184 1.21926 0.92818 1.00365 1.09557 1.21945 0.99130 0.94055 1.07590 1.22351 0.83037 0.94878 1.07664 1.20229 0.92143 0.99302 0.95745 1.21154 0.86472 0.92930 0.97110 1.44723 1.34371 1.52085 1.06459 1.15775 0.79382 0.78777 0.85043 1.90856 1.64040 1.61657 1.31477 1.41332 1.31792 1.49344 1.06109 1.18942 0.93959 0.96177 0.87254 1.21401 1.08251 1.13949 0.89424 1.21728 0.90903 0.94033 0.97627 1.20497 1.04718 1.03494 0.85643 1.48760 1.25735 1.36261 1.01819 1.19243 0.83581 0.88681 0.92843 1.21448 0.99396 0.94937 1.43385 0.93278 1.25716 0.94729 1.03166 0.94142 1.69998 1.07281 1.36283 1.41972 0.85368 0.78554 0.78469 0.78177 1.19990 1.19499 1.19506 1.77160 1.20578 1.24235 0.96960 1.83955 1.17065 1.36184 1.72012 0.88810 0.90415 0.87636 0.81800 0.81850 0.85408 0.87956 0.92835 0.91566 0.74388 0.73942 0.81806 0.88868 0.91384 0.88089 0.95670 0.93017 0.91743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 10.42 71.24 0.74 0.13 16 2 C -0.03 -0.43 7.32 24.83 0.18 -0.25 16 3 C -0.23 -3.42 10.81 22.19 0.24 -3.18 16 4 C -0.21 -3.18 10.81 22.19 0.24 -2.94 16 5 C -0.03 -0.47 6.57 24.83 0.16 -0.31 16 6 C -0.04 -0.38 5.86 29.85 0.17 -0.21 16 7 C 0.15 2.43 5.66 86.38 0.49 2.92 16 8 N -0.72 -12.40 5.56 -478.52 -2.66 -15.06 16 9 C 0.71 20.28 8.53 179.06 1.53 21.81 16 10 O -0.60 -22.17 13.47 -4.02 -0.05 -22.23 16 11 N -0.63 -19.17 5.46 -321.23 -1.75 -20.92 16 12 C 0.29 12.06 8.11 133.31 1.08 13.14 16 13 C -0.30 -12.63 9.52 22.11 0.21 -12.42 16 14 C 0.09 3.77 6.93 41.39 0.29 4.06 16 15 C -0.09 -2.93 9.89 71.24 0.70 -2.23 16 16 N -0.34 -16.85 3.59 -338.44 -1.22 -18.07 16 17 C 0.28 14.70 5.81 85.63 0.50 15.20 16 18 C -0.55 -31.28 9.39 25.60 0.24 -31.04 16 19 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 20 C 0.02 1.29 5.46 84.66 0.46 1.75 16 21 N -0.92 -51.92 13.29 21.45 0.28 -51.64 16 22 Si 0.97 43.30 29.54 68.60 2.03 45.33 16 23 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 24 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 25 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 26 N -0.36 -16.99 12.59 -54.44 -0.69 -17.68 16 27 O -0.19 -3.74 10.65 -2.50 -0.03 -3.76 16 28 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.16 1.72 8.06 -2.91 -0.02 1.69 16 32 H 0.16 1.85 8.06 -2.91 -0.02 1.83 16 33 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.42 3.91 8.49 -92.70 -0.79 3.12 16 38 H 0.42 9.69 8.84 -92.71 -0.82 8.87 16 39 H 0.16 6.80 5.91 -2.91 -0.02 6.78 16 40 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 41 H 0.07 2.54 7.71 -2.39 -0.02 2.52 16 42 H 0.10 2.91 8.14 -2.38 -0.02 2.89 16 43 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.05 2.73 7.65 -2.38 -0.02 2.71 16 45 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -77.00 388.80 2.58 -74.42 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: -0.57 Total: 23.16 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: 7.24 Total: 6.45 kcal Atomic # 7 Polarization: -117.34 SS G_CDS: -6.03 Total: -123.37 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: -0.08 Total: -25.99 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -77.00 2.58 -74.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000540814041.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.503 kcal (2) G-P(sol) polarization free energy of solvation -77.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds