Wall clock time and date at job start Tue Mar 31 2020 16:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00170 * 2 1 4 4 H 1.48506 * 109.47469 * 270.00335 * 3 2 1 5 5 H 1.48498 * 109.47223 * 30.00018 * 3 2 1 6 6 H 1.48501 * 109.47477 * 149.99900 * 3 2 1 7 7 C 1.37872 * 119.99919 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00185 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00116 * 179.97438 * 7 2 1 10 10 N 1.46505 * 109.47145 * 179.97438 * 9 7 2 11 11 C 1.34967 * 125.97925 * 124.98562 * 10 9 7 12 12 C 1.35239 * 107.85413 * 180.02562 * 11 10 9 13 13 C 1.40375 * 107.87295 * 359.97438 * 12 11 10 14 14 N 1.40402 * 125.97073 * 179.97438 * 13 12 11 15 15 C 1.33792 * 124.17719 * 5.02512 * 14 13 12 16 16 O 1.21538 * 123.76897 * 359.95870 * 15 14 13 17 17 N 1.34532 * 112.45764 * 179.97438 * 15 14 13 18 18 C 1.47310 * 106.61933 * 359.97438 * 17 15 14 19 19 H 1.08998 * 110.59845 * 241.32382 * 18 17 15 20 20 C 1.52994 * 110.60239 * 118.52670 * 18 17 15 21 21 C 1.52995 * 109.47546 * 181.45237 * 20 18 17 22 22 C 1.52994 * 109.47546 * 180.02562 * 21 20 18 23 23 C 1.52999 * 109.47115 * 59.99831 * 22 21 20 24 24 C 1.53003 * 109.47292 * 300.00452 * 23 22 21 25 25 C 1.52994 * 109.47094 * 59.99517 * 24 23 22 26 26 C 1.34767 * 124.17775 * 184.72149 * 14 13 12 27 27 O 1.21239 * 127.15770 * 0.02562 * 26 14 13 28 28 N 1.31194 * 108.06178 * 359.97438 * 13 12 11 29 29 H 0.96996 * 119.99686 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.47032 * 60.00143 * 9 7 2 31 31 H 1.08995 * 109.47248 * 299.99745 * 9 7 2 32 32 H 1.07999 * 126.07363 * 0.03358 * 11 10 9 33 33 H 1.08001 * 126.06681 * 179.97438 * 12 11 10 34 34 H 0.96997 * 126.68757 * 179.97438 * 17 15 14 35 35 H 1.09004 * 109.47139 * 301.45443 * 20 18 17 36 36 H 1.09004 * 109.47070 * 300.00249 * 21 20 18 37 37 H 1.09004 * 109.47005 * 59.99650 * 21 20 18 38 38 H 1.09004 * 109.47139 * 300.00207 * 22 21 20 39 39 H 1.09000 * 109.47530 * 180.02562 * 22 21 20 40 40 H 1.09004 * 109.47531 * 180.02562 * 23 22 21 41 41 H 1.09004 * 109.47289 * 59.99943 * 23 22 21 42 42 H 1.09004 * 109.46966 * 299.99627 * 24 23 22 43 43 H 1.09004 * 109.47245 * 180.02562 * 24 23 22 44 44 H 1.09000 * 109.47215 * 180.02562 * 25 24 23 45 45 H 1.09004 * 109.47074 * 60.00761 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9998 -2.5753 -0.0010 11 6 4.8542 -3.1144 -0.8960 12 6 5.0548 -4.4067 -0.5515 13 6 4.2946 -4.6688 0.5991 14 7 4.2231 -5.8953 1.2786 15 6 4.9570 -6.9702 0.9685 16 8 5.7654 -6.9974 0.0614 17 7 4.6997 -8.0175 1.7728 18 6 3.6702 -7.5725 2.7278 19 1 4.0469 -7.6241 3.7493 20 6 2.4003 -8.4129 2.5809 21 6 1.3375 -7.9063 3.5579 22 6 0.0678 -8.7472 3.4115 23 6 0.3873 -10.2113 3.7197 24 6 1.4502 -10.7180 2.7427 25 6 2.7198 -9.8771 2.8891 26 6 3.4111 -6.1336 2.3275 27 8 2.6336 -5.3588 2.8425 28 7 3.6624 -3.5674 0.9286 29 1 -0.4849 0.8400 0.0004 30 1 3.8752 -0.6804 0.8889 31 1 3.8745 -0.6801 -0.8911 32 1 5.2988 -2.6043 -1.7378 33 1 5.6877 -5.1120 -1.0696 34 1 5.1118 -8.8947 1.7317 35 1 2.0253 -8.3295 1.5608 36 1 1.7125 -7.9898 4.5781 37 1 1.1102 -6.8631 3.3387 38 1 -0.3074 -8.6642 2.3914 39 1 -0.6896 -8.3860 4.1073 40 1 -0.5172 -10.8106 3.6150 41 1 0.7625 -10.2944 4.7398 42 1 1.0750 -10.6350 1.7226 43 1 1.6775 -11.7613 2.9620 44 1 3.4769 -10.2378 2.1928 45 1 3.0950 -9.9602 3.9092 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567339249.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:15 Heat of formation + Delta-G solvation = 31.114806 kcal Electronic energy + Delta-G solvation = -28849.367543 eV Core-core repulsion = 24869.293189 eV Total energy + Delta-G solvation = -3980.074354 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.68332 -40.43436 -38.98357 -38.31242 -36.10673 -35.01588 -33.35183 -31.69623 -31.27131 -30.93332 -29.59380 -27.64256 -26.74672 -23.89795 -23.35520 -22.78691 -22.04877 -21.27930 -20.14219 -20.11799 -19.29503 -17.86469 -17.17121 -17.06704 -16.64592 -16.20920 -15.65107 -15.33495 -15.29198 -14.81578 -14.55044 -14.43087 -14.34123 -14.00060 -13.82234 -13.31238 -13.20637 -12.80515 -12.66384 -12.65005 -12.46360 -12.36101 -12.15326 -11.45964 -11.39881 -11.22000 -10.99572 -10.86025 -10.79495 -10.75523 -10.62587 -10.40637 -10.17113 -10.08992 -9.71895 -9.62875 -9.53878 -8.75775 -8.44461 -7.78998 -6.21985 -4.24741 1.65391 1.93423 2.39839 2.84053 2.93877 3.15736 3.22863 3.23671 3.45244 3.64012 3.88206 4.17554 4.23623 4.34247 4.51314 4.65889 4.83454 4.98372 5.01201 5.03951 5.09310 5.19938 5.22040 5.25657 5.29770 5.36664 5.52690 5.59607 5.74333 5.82337 5.84654 5.86308 5.88465 6.01011 6.16565 6.20417 6.21178 6.35517 6.38035 6.59966 6.64587 6.92711 7.12300 7.32524 7.51967 7.69235 8.09707 8.29548 8.39962 8.88070 9.31989 10.90749 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014458 B = 0.003233 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.160323 B = 8657.512069 C =10207.875037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.077 3.923 3 Si 0.873 3.127 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.536 4.536 8 H 0.086 0.914 9 C 0.231 3.769 10 N -0.314 5.314 11 C 0.056 3.944 12 C -0.274 4.274 13 C 0.249 3.751 14 N -0.488 5.488 15 C 0.712 3.288 16 O -0.530 6.530 17 N -0.722 5.722 18 C 0.102 3.898 19 H 0.128 0.872 20 C -0.085 4.085 21 C -0.124 4.124 22 C -0.118 4.118 23 C -0.121 4.121 24 C -0.118 4.118 25 C -0.111 4.111 26 C 0.514 3.486 27 O -0.419 6.419 28 N -0.252 5.252 29 H 0.268 0.732 30 H 0.044 0.956 31 H 0.052 0.948 32 H 0.175 0.825 33 H 0.158 0.842 34 H 0.440 0.560 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.085 0.915 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.462 -21.019 6.293 23.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.127 4.127 3 Si 0.699 3.301 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.574 4.574 8 H 0.104 0.896 9 C 0.112 3.888 10 N -0.097 5.097 11 C -0.093 4.093 12 C -0.305 4.305 13 C -0.002 4.002 14 N -0.231 5.231 15 C 0.412 3.588 16 O -0.402 6.402 17 N -0.387 5.387 18 C -0.007 4.007 19 H 0.146 0.854 20 C -0.104 4.104 21 C -0.162 4.162 22 C -0.156 4.156 23 C -0.158 4.158 24 C -0.156 4.156 25 C -0.149 4.149 26 C 0.299 3.701 27 O -0.282 6.282 28 N -0.081 5.081 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.192 0.808 33 H 0.175 0.825 34 H 0.285 0.715 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.103 0.897 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.414 -19.679 6.906 21.820 hybrid contribution 1.027 0.195 -0.628 1.220 sum 7.442 -19.484 6.278 21.782 Atomic orbital electron populations 1.69874 1.06150 1.27286 1.48953 1.24819 0.94872 0.98745 0.94227 0.86915 0.80466 0.83878 0.78886 1.19691 1.20490 1.18853 1.21086 0.87610 0.95833 1.52842 0.89573 1.20130 0.97685 0.72520 0.98431 1.48880 1.31924 1.10507 1.18363 1.22531 0.95740 0.94223 0.96772 1.21196 1.11224 0.97178 1.00919 1.18744 1.01259 0.85331 0.94887 1.42843 1.38705 1.10433 1.31097 1.15537 0.80759 0.80146 0.82348 1.90972 1.35934 1.82319 1.30930 1.45435 1.43879 1.14733 1.34650 1.22212 0.90886 0.91490 0.96160 0.85431 1.21377 0.92571 0.94539 1.01937 1.21699 0.94474 1.01247 0.98778 1.21505 0.97311 0.94593 1.02164 1.21567 0.98611 0.96312 0.99331 1.21508 0.95199 0.98799 1.00077 1.21556 0.98074 0.93269 1.01957 1.20913 0.80139 0.89551 0.79537 1.90894 1.31523 1.51996 1.53832 1.77720 1.21241 0.94951 1.14181 0.92159 0.93781 0.93033 0.80760 0.82490 0.71494 0.89862 0.91332 0.89659 0.91844 0.91529 0.92091 0.91934 0.91822 0.91825 0.91768 0.91288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.83 13.96 55.43 0.77 -26.06 16 2 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 3 Si 0.87 20.22 27.47 -169.99 -4.67 15.55 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.26 -5.78 6.54 56.52 0.37 -5.41 16 7 C -0.54 -15.32 9.79 -34.44 -0.34 -15.66 16 8 H 0.09 2.82 8.06 -52.48 -0.42 2.39 16 9 C 0.23 5.49 5.33 -5.19 -0.03 5.46 16 10 N -0.31 -7.17 3.67 -62.56 -0.23 -7.40 16 11 C 0.06 1.05 11.44 -17.24 -0.20 0.86 16 12 C -0.27 -5.21 9.88 -39.85 -0.39 -5.61 16 13 C 0.25 5.21 7.68 -154.18 -1.18 4.03 16 14 N -0.49 -8.46 2.83 -65.79 -0.19 -8.65 16 15 C 0.71 10.44 8.58 -88.01 -0.76 9.69 16 16 O -0.53 -8.99 15.49 5.33 0.08 -8.91 16 17 N -0.72 -6.81 5.86 -59.19 -0.35 -7.16 16 18 C 0.10 0.99 3.20 -68.21 -0.22 0.77 16 19 H 0.13 0.92 8.14 -51.93 -0.42 0.49 16 20 C -0.08 -0.73 1.98 -90.63 -0.18 -0.91 16 21 C -0.12 -1.19 4.96 -26.74 -0.13 -1.32 16 22 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 16 23 C -0.12 -0.81 5.92 -26.73 -0.16 -0.97 16 24 C -0.12 -0.73 5.92 -26.73 -0.16 -0.89 16 25 C -0.11 -0.66 5.07 -26.73 -0.14 -0.79 16 26 C 0.51 8.12 7.40 -10.55 -0.08 8.04 16 27 O -0.42 -8.15 15.24 5.59 0.09 -8.06 16 28 N -0.25 -6.06 11.57 31.48 0.36 -5.70 16 29 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.04 1.05 7.20 -51.93 -0.37 0.67 16 31 H 0.05 1.09 7.50 -51.93 -0.39 0.70 16 32 H 0.18 2.47 8.06 -52.49 -0.42 2.05 16 33 H 0.16 2.78 6.52 -52.49 -0.34 2.44 16 34 H 0.44 2.71 8.25 -40.82 -0.34 2.37 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.08 1.09 6.12 -51.93 -0.32 0.78 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.06 0.32 7.21 -51.93 -0.37 -0.06 16 45 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 364.02 15.07 5.49 5.49 Total: -1.00 -35.54 364.02 -9.23 -44.77 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -6.37 Total: 2.50 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: -4.21 Total: 3.63 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: 0.37 Total: -54.97 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: 0.17 Total: -16.97 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -4.67 Total: 15.55 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.54 -9.23 -44.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567339249.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.885 kcal (2) G-P(sol) polarization free energy of solvation -35.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds