Wall clock time and date at job start Tue Mar 31 2020 16:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00170 * 2 1 4 4 H 1.48506 * 109.47469 * 270.00335 * 3 2 1 5 5 H 1.48498 * 109.47223 * 30.00018 * 3 2 1 6 6 H 1.48501 * 109.47477 * 149.99900 * 3 2 1 7 7 C 1.37872 * 119.99919 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00185 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00116 * 179.97438 * 7 2 1 10 10 N 1.46505 * 109.47145 * 179.97438 * 9 7 2 11 11 C 1.34967 * 125.97925 * 124.98562 * 10 9 7 12 12 C 1.35239 * 107.85413 * 180.02562 * 11 10 9 13 13 C 1.40375 * 107.87295 * 359.97438 * 12 11 10 14 14 N 1.40402 * 125.97073 * 179.97438 * 13 12 11 15 15 C 1.33792 * 124.17719 * 5.02512 * 14 13 12 16 16 O 1.21538 * 123.76897 * 359.95870 * 15 14 13 17 17 N 1.34532 * 112.45764 * 179.97438 * 15 14 13 18 18 C 1.47310 * 106.61933 * 359.97438 * 17 15 14 19 19 H 1.08998 * 110.59845 * 241.32382 * 18 17 15 20 20 C 1.52994 * 110.60239 * 118.52670 * 18 17 15 21 21 C 1.52995 * 109.47546 * 181.45237 * 20 18 17 22 22 C 1.52994 * 109.47546 * 180.02562 * 21 20 18 23 23 C 1.52999 * 109.47115 * 59.99831 * 22 21 20 24 24 C 1.53003 * 109.47292 * 300.00452 * 23 22 21 25 25 C 1.52994 * 109.47094 * 59.99517 * 24 23 22 26 26 C 1.34767 * 124.17775 * 184.72149 * 14 13 12 27 27 O 1.21239 * 127.15770 * 0.02562 * 26 14 13 28 28 N 1.31194 * 108.06178 * 359.97438 * 13 12 11 29 29 H 0.96996 * 119.99686 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.47032 * 60.00143 * 9 7 2 31 31 H 1.08995 * 109.47248 * 299.99745 * 9 7 2 32 32 H 1.07999 * 126.07363 * 0.03358 * 11 10 9 33 33 H 1.08001 * 126.06681 * 179.97438 * 12 11 10 34 34 H 0.96997 * 126.68757 * 179.97438 * 17 15 14 35 35 H 1.09004 * 109.47139 * 301.45443 * 20 18 17 36 36 H 1.09004 * 109.47070 * 300.00249 * 21 20 18 37 37 H 1.09004 * 109.47005 * 59.99650 * 21 20 18 38 38 H 1.09004 * 109.47139 * 300.00207 * 22 21 20 39 39 H 1.09000 * 109.47530 * 180.02562 * 22 21 20 40 40 H 1.09004 * 109.47531 * 180.02562 * 23 22 21 41 41 H 1.09004 * 109.47289 * 59.99943 * 23 22 21 42 42 H 1.09004 * 109.46966 * 299.99627 * 24 23 22 43 43 H 1.09004 * 109.47245 * 180.02562 * 24 23 22 44 44 H 1.09000 * 109.47215 * 180.02562 * 25 24 23 45 45 H 1.09004 * 109.47074 * 60.00761 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9998 -2.5753 -0.0010 11 6 4.8542 -3.1144 -0.8960 12 6 5.0548 -4.4067 -0.5515 13 6 4.2946 -4.6688 0.5991 14 7 4.2231 -5.8953 1.2786 15 6 4.9570 -6.9702 0.9685 16 8 5.7654 -6.9974 0.0614 17 7 4.6997 -8.0175 1.7728 18 6 3.6702 -7.5725 2.7278 19 1 4.0469 -7.6241 3.7493 20 6 2.4003 -8.4129 2.5809 21 6 1.3375 -7.9063 3.5579 22 6 0.0678 -8.7472 3.4115 23 6 0.3873 -10.2113 3.7197 24 6 1.4502 -10.7180 2.7427 25 6 2.7198 -9.8771 2.8891 26 6 3.4111 -6.1336 2.3275 27 8 2.6336 -5.3588 2.8425 28 7 3.6624 -3.5674 0.9286 29 1 -0.4849 0.8400 0.0004 30 1 3.8752 -0.6804 0.8889 31 1 3.8745 -0.6801 -0.8911 32 1 5.2988 -2.6043 -1.7378 33 1 5.6877 -5.1120 -1.0696 34 1 5.1118 -8.8947 1.7317 35 1 2.0253 -8.3295 1.5608 36 1 1.7125 -7.9898 4.5781 37 1 1.1102 -6.8631 3.3387 38 1 -0.3074 -8.6642 2.3914 39 1 -0.6896 -8.3860 4.1073 40 1 -0.5172 -10.8106 3.6150 41 1 0.7625 -10.2944 4.7398 42 1 1.0750 -10.6350 1.7226 43 1 1.6775 -11.7613 2.9620 44 1 3.4769 -10.2378 2.1928 45 1 3.0950 -9.9602 3.9092 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567339249.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:14 Heat of formation + Delta-G solvation = 6.297240 kcal Electronic energy + Delta-G solvation = -28850.443714 eV Core-core repulsion = 24869.293189 eV Total energy + Delta-G solvation = -3981.150525 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.88172 -41.97232 -40.02033 -39.32022 -37.29977 -36.34206 -35.24511 -33.31044 -32.23759 -31.60653 -31.18345 -29.37907 -27.82088 -25.42127 -24.51452 -23.75124 -23.23286 -22.38480 -21.57319 -20.78537 -20.64704 -19.21947 -18.98109 -18.30790 -18.12066 -17.45924 -16.89312 -16.64092 -16.37853 -16.16526 -15.82480 -15.54420 -15.31930 -15.06741 -14.94915 -14.87963 -14.46542 -14.22646 -14.15716 -13.92187 -13.38671 -13.34578 -13.07986 -12.98942 -12.55751 -12.44879 -12.16852 -12.06512 -12.00077 -11.91728 -11.82700 -11.72326 -11.46491 -11.35543 -11.09351 -10.89470 -10.77939 -10.52625 -10.06245 -9.40950 -8.39789 -6.51200 0.43086 0.66168 0.88353 1.34240 1.38493 1.44284 1.48189 1.86200 2.05594 2.24136 2.27278 2.77016 2.92482 3.37831 3.54924 3.74181 3.85768 3.89262 4.02954 4.18544 4.27486 4.31904 4.37926 4.39691 4.56548 4.57633 4.60453 4.63944 4.71557 4.80650 4.81887 4.94664 4.99872 5.19791 5.20635 5.20719 5.26533 5.28848 5.40826 5.45232 5.49867 5.58873 5.73395 5.89296 5.92059 6.29878 6.32307 6.53604 6.77324 6.99633 7.11339 8.77924 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014458 B = 0.003233 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.160323 B = 8657.512069 C =10207.875037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.013 3.987 3 Si 0.960 3.040 4 H -0.248 1.248 5 H -0.281 1.281 6 H -0.239 1.239 7 C -0.551 4.551 8 H 0.020 0.980 9 C 0.239 3.761 10 N -0.340 5.340 11 C 0.071 3.929 12 C -0.278 4.278 13 C 0.246 3.754 14 N -0.502 5.502 15 C 0.708 3.292 16 O -0.553 6.553 17 N -0.686 5.686 18 C 0.122 3.878 19 H 0.171 0.829 20 C -0.078 4.078 21 C -0.124 4.124 22 C -0.120 4.120 23 C -0.116 4.116 24 C -0.119 4.119 25 C -0.104 4.104 26 C 0.500 3.500 27 O -0.468 6.468 28 N -0.317 5.317 29 H 0.273 0.727 30 H 0.046 0.954 31 H 0.092 0.908 32 H 0.225 0.775 33 H 0.173 0.827 34 H 0.461 0.539 35 H 0.061 0.939 36 H 0.088 0.912 37 H 0.042 0.958 38 H 0.046 0.954 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.051 0.949 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.578 -22.342 6.512 25.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.186 4.186 3 Si 0.780 3.220 4 H -0.172 1.172 5 H -0.207 1.207 6 H -0.162 1.162 7 C -0.589 4.589 8 H 0.038 0.962 9 C 0.119 3.881 10 N -0.122 5.122 11 C -0.076 4.076 12 C -0.309 4.309 13 C -0.007 4.007 14 N -0.245 5.245 15 C 0.409 3.591 16 O -0.427 6.427 17 N -0.353 5.353 18 C 0.013 3.987 19 H 0.187 0.813 20 C -0.098 4.098 21 C -0.162 4.162 22 C -0.157 4.157 23 C -0.154 4.154 24 C -0.156 4.156 25 C -0.142 4.142 26 C 0.288 3.712 27 O -0.335 6.335 28 N -0.146 5.146 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.110 0.890 32 H 0.242 0.758 33 H 0.190 0.810 34 H 0.311 0.689 35 H 0.080 0.920 36 H 0.106 0.894 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.070 0.930 43 H 0.102 0.898 44 H 0.101 0.899 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 9.561 -21.104 7.133 24.242 hybrid contribution -0.048 0.467 -0.699 0.841 sum 9.514 -20.637 6.434 23.618 Atomic orbital electron populations 1.70066 1.08725 1.28890 1.50461 1.25988 0.95826 1.03743 0.93029 0.85564 0.79408 0.76754 0.80305 1.17186 1.20670 1.16175 1.21207 0.90591 0.93637 1.53447 0.96205 1.19978 0.94122 0.73913 1.00056 1.48778 1.33574 1.10243 1.19633 1.23353 0.93669 0.94114 0.96481 1.21466 1.11240 0.97758 1.00452 1.19232 1.00146 0.85940 0.95380 1.43283 1.39585 1.10112 1.31495 1.15660 0.80366 0.80419 0.82697 1.90946 1.36951 1.82720 1.32116 1.45245 1.42863 1.14261 1.32920 1.22330 0.91617 0.87076 0.97647 0.81253 1.21366 0.91372 0.96525 1.00549 1.21656 0.95467 0.98956 1.00086 1.21508 0.96753 0.96352 1.01112 1.21547 0.99268 0.94290 1.00263 1.21528 0.94957 0.99911 0.99223 1.21584 0.98501 0.90199 1.03896 1.22044 0.78835 0.91697 0.78602 1.90867 1.33301 1.54094 1.55202 1.77624 1.23821 0.96637 1.16488 0.91822 0.93641 0.89031 0.75843 0.80954 0.68919 0.92029 0.89382 0.93913 0.93543 0.91944 0.91712 0.90594 0.92992 0.89809 0.89925 0.88894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.82 13.96 21.45 0.30 -59.52 16 2 C 0.01 0.75 5.47 84.65 0.46 1.21 16 3 Si 0.96 41.46 27.47 68.60 1.88 43.35 16 4 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 5 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.24 -9.29 6.54 99.48 0.65 -8.64 16 7 C -0.55 -33.02 9.79 25.60 0.25 -32.77 16 8 H 0.02 1.40 8.06 -2.91 -0.02 1.38 16 9 C 0.24 11.32 5.33 85.63 0.46 11.77 16 10 N -0.34 -15.74 3.67 -351.83 -1.29 -17.03 16 11 C 0.07 2.59 11.44 83.52 0.96 3.54 16 12 C -0.28 -10.50 9.88 22.10 0.22 -10.29 16 13 C 0.25 10.64 7.68 133.24 1.02 11.66 16 14 N -0.50 -17.84 2.83 -599.30 -1.70 -19.54 16 15 C 0.71 20.16 8.58 179.44 1.54 21.70 16 16 O -0.55 -18.17 15.49 -3.83 -0.06 -18.23 16 17 N -0.69 -11.24 5.86 -459.61 -2.69 -13.93 16 18 C 0.12 2.17 3.20 44.37 0.14 2.31 16 19 H 0.17 1.81 8.14 -2.39 -0.02 1.79 16 20 C -0.08 -1.26 1.98 -10.80 -0.02 -1.28 16 21 C -0.12 -2.39 4.96 30.59 0.15 -2.24 16 22 C -0.12 -2.09 5.92 30.59 0.18 -1.91 16 23 C -0.12 -1.34 5.92 30.60 0.18 -1.16 16 24 C -0.12 -1.14 5.92 30.59 0.18 -0.96 16 25 C -0.10 -0.85 5.07 30.59 0.16 -0.70 16 26 C 0.50 16.45 7.40 87.94 0.65 17.10 16 27 O -0.47 -19.76 15.24 -2.90 -0.04 -19.80 16 28 N -0.32 -16.10 11.57 -54.32 -0.63 -16.73 16 29 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 30 H 0.05 2.13 7.20 -2.38 -0.02 2.11 16 31 H 0.09 3.60 7.50 -2.39 -0.02 3.58 16 32 H 0.23 5.51 8.06 -2.91 -0.02 5.49 16 33 H 0.17 5.91 6.52 -2.91 -0.02 5.89 16 34 H 0.46 3.85 8.25 -92.71 -0.77 3.08 16 35 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.04 1.21 6.12 -2.39 -0.01 1.19 16 38 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 41 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 42 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 44 H 0.08 0.43 7.21 -2.39 -0.02 0.41 16 45 H 0.09 0.42 8.14 -2.38 -0.02 0.40 16 Total: -1.00 -87.58 364.02 2.50 -85.08 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: 0.20 Total: 18.36 kcal Atomic # 6 Polarization: 11.46 SS G_CDS: 6.53 Total: 17.99 kcal Atomic # 7 Polarization: -120.73 SS G_CDS: -6.01 Total: -126.74 kcal Atomic # 8 Polarization: -37.93 SS G_CDS: -0.10 Total: -38.04 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 1.88 Total: 43.35 kcal Total: -87.58 2.50 -85.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567339249.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.379 kcal (2) G-P(sol) polarization free energy of solvation -87.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds