Wall clock time and date at job start Tue Mar 31 2020 16:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99966 * 2 1 4 4 H 1.48504 * 109.46894 * 270.00188 * 3 2 1 5 5 H 1.48500 * 109.47292 * 30.00366 * 3 2 1 6 6 H 1.48503 * 109.47006 * 150.00624 * 3 2 1 7 7 C 1.37881 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00062 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99730 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.46666 * 180.02562 * 9 7 2 11 11 C 1.34968 * 125.97895 * 125.00335 * 10 9 7 12 12 C 1.35237 * 107.85365 * 179.97438 * 11 10 9 13 13 C 1.40373 * 107.87433 * 359.97438 * 12 11 10 14 14 N 1.40395 * 125.96902 * 180.02562 * 13 12 11 15 15 C 1.33796 * 124.17933 * 185.14600 * 14 13 12 16 16 O 1.21537 * 123.76819 * 0.03797 * 15 14 13 17 17 N 1.34526 * 112.45867 * 180.30656 * 15 14 13 18 18 C 1.47308 * 106.61861 * 359.74688 * 17 15 14 19 19 H 1.09007 * 110.59685 * 118.52855 * 18 17 15 20 20 C 1.53003 * 110.59878 * 241.46929 * 18 17 15 21 21 C 1.53002 * 109.46910 * 54.17883 * 20 18 17 22 22 C 1.52999 * 109.47111 * 179.97438 * 21 20 18 23 23 C 1.52994 * 109.46921 * 60.00045 * 22 21 20 24 24 C 1.53002 * 109.47191 * 299.99906 * 23 22 21 25 25 C 1.52994 * 109.47423 * 294.17743 * 20 18 17 26 26 C 1.34766 * 124.17990 * 4.99901 * 14 13 12 27 27 O 1.21243 * 127.15918 * 359.97438 * 26 14 13 28 28 N 1.31196 * 108.06105 * 0.26365 * 13 12 11 29 29 H 0.97002 * 120.00140 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.47340 * 59.99833 * 9 7 2 31 31 H 1.08998 * 109.46858 * 299.99763 * 9 7 2 32 32 H 1.08002 * 126.07003 * 359.95410 * 11 10 9 33 33 H 1.08005 * 126.06443 * 180.02562 * 12 11 10 34 34 H 0.97005 * 126.68957 * 179.73259 * 17 15 14 35 35 H 1.09001 * 109.46749 * 174.17110 * 20 18 17 36 36 H 1.08995 * 109.47103 * 299.99829 * 21 20 18 37 37 H 1.09000 * 109.46816 * 59.99642 * 21 20 18 38 38 H 1.09005 * 109.47302 * 299.99989 * 22 21 20 39 39 H 1.09002 * 109.46981 * 180.02562 * 22 21 20 40 40 H 1.09000 * 109.47565 * 179.97438 * 23 22 21 41 41 H 1.09001 * 109.47675 * 59.99873 * 23 22 21 42 42 H 1.08995 * 109.47103 * 299.99889 * 24 23 22 43 43 H 1.09000 * 109.47267 * 179.97438 * 24 23 22 44 44 H 1.09002 * 109.47318 * 299.99886 * 25 20 18 45 45 H 1.08995 * 109.47007 * 59.99916 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 2.2421 -4.6224 0.8941 12 6 3.2605 -5.4428 0.5492 13 6 3.8679 -4.9154 -0.6012 14 7 4.9648 -5.4677 -1.2815 15 6 5.5783 -4.8840 -2.3174 16 8 5.2488 -3.8093 -2.7795 17 7 6.5968 -5.6224 -2.7940 18 6 6.6611 -6.8373 -1.9635 19 1 6.4936 -7.7266 -2.5713 20 6 8.0062 -6.9239 -1.2395 21 6 8.2464 -5.6333 -0.4536 22 6 9.5912 -5.7200 0.2708 23 6 10.7113 -5.9090 -0.7541 24 6 10.4711 -7.1996 -1.5400 25 6 9.1260 -7.1125 -2.2648 26 6 5.5317 -6.6499 -0.9700 27 8 5.2035 -7.4083 -0.0828 28 7 3.2347 -3.8133 -0.9266 29 1 -0.4850 0.8401 0.0004 30 1 0.6240 -2.5567 -0.8902 31 1 0.6247 -2.5571 0.8897 32 1 1.5783 -4.7521 1.7361 33 1 3.5538 -6.3444 1.0665 34 1 7.1758 -5.3985 -3.5394 35 1 7.9955 -7.7705 -0.5531 36 1 8.2570 -4.7866 -1.1400 37 1 7.4485 -5.4989 0.2768 38 1 9.5802 -6.5667 0.9573 39 1 9.7620 -4.8007 0.8311 40 1 11.6694 -5.9703 -0.2381 41 1 10.7223 -5.0623 -1.4406 42 1 10.4601 -8.0462 -0.8536 43 1 11.2689 -7.3339 -2.2705 44 1 8.9550 -8.0320 -2.8247 45 1 9.1367 -6.2659 -2.9511 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567339250.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:18 Heat of formation + Delta-G solvation = 26.658830 kcal Electronic energy + Delta-G solvation = -29039.564519 eV Core-core repulsion = 25059.296939 eV Total energy + Delta-G solvation = -3980.267580 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.72942 -40.36924 -38.85038 -38.47634 -35.97900 -34.94965 -33.39529 -31.57093 -31.11734 -30.95728 -29.49783 -27.36178 -26.69040 -24.04653 -23.41894 -22.94430 -22.09654 -21.44569 -20.16371 -19.94546 -19.20946 -17.84052 -17.16263 -16.65366 -16.57516 -16.18454 -15.64576 -15.32230 -15.17915 -14.81913 -14.54639 -14.45544 -14.26102 -14.09868 -13.94558 -13.81942 -13.01134 -12.68872 -12.56997 -12.54533 -12.45233 -12.26642 -11.81556 -11.55506 -11.47682 -11.08303 -10.93128 -10.85410 -10.83088 -10.66773 -10.59084 -10.47120 -10.26709 -10.18739 -9.76028 -9.54261 -9.50100 -8.61742 -8.37132 -7.74738 -6.22730 -4.27032 1.55799 1.99763 2.54164 2.90802 2.96657 3.27833 3.33387 3.38545 3.59456 3.69685 3.86021 4.07380 4.27555 4.35293 4.41468 4.63852 4.82934 4.90176 4.98352 5.05384 5.11878 5.13573 5.16912 5.21379 5.26569 5.34138 5.51525 5.55647 5.67162 5.75543 5.79828 5.81338 5.92720 5.95548 5.99587 6.12613 6.20451 6.41011 6.71344 6.76444 7.00403 7.04027 7.25023 7.42016 7.70476 7.86404 7.94010 8.24118 8.49090 8.81278 9.38697 10.86439 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016058 B = 0.003118 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.269459 B = 8979.006823 C = 9752.381856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.063 3.937 3 Si 0.908 3.092 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.528 4.528 8 H 0.070 0.930 9 C 0.257 3.743 10 N -0.315 5.315 11 C 0.059 3.941 12 C -0.284 4.284 13 C 0.244 3.756 14 N -0.484 5.484 15 C 0.694 3.306 16 O -0.499 6.499 17 N -0.725 5.725 18 C 0.104 3.896 19 H 0.129 0.871 20 C -0.085 4.085 21 C -0.122 4.122 22 C -0.116 4.116 23 C -0.121 4.121 24 C -0.117 4.117 25 C -0.112 4.112 26 C 0.532 3.468 27 O -0.456 6.456 28 N -0.248 5.248 29 H 0.267 0.733 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.174 0.826 33 H 0.151 0.849 34 H 0.439 0.561 35 H 0.097 0.903 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.069 0.931 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.876 -17.777 -2.377 26.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.140 4.140 3 Si 0.735 3.265 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.566 4.566 8 H 0.088 0.912 9 C 0.140 3.860 10 N -0.097 5.097 11 C -0.091 4.091 12 C -0.316 4.316 13 C -0.008 4.008 14 N -0.226 5.226 15 C 0.394 3.606 16 O -0.367 6.367 17 N -0.392 5.392 18 C -0.006 4.006 19 H 0.147 0.853 20 C -0.104 4.104 21 C -0.160 4.160 22 C -0.154 4.154 23 C -0.159 4.159 24 C -0.155 4.155 25 C -0.150 4.150 26 C 0.318 3.682 27 O -0.323 6.323 28 N -0.077 5.077 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.192 0.808 33 H 0.169 0.831 34 H 0.284 0.716 35 H 0.116 0.884 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.087 0.913 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 18.088 -16.336 -2.926 24.548 hybrid contribution 0.588 0.354 0.242 0.728 sum 18.676 -15.983 -2.685 24.728 Atomic orbital electron populations 1.69915 1.06030 1.27655 1.49837 1.24925 0.94981 0.99555 0.94500 0.86314 0.79635 0.82014 0.78490 1.20234 1.20996 1.19691 1.21248 0.94079 0.89262 1.52050 0.91199 1.19838 0.85488 0.81182 0.99513 1.49422 1.22777 1.19587 1.17924 1.22511 0.99868 0.89867 0.96817 1.21040 1.02977 1.06483 1.01103 1.18780 0.91277 0.95839 0.94857 1.42911 1.28317 1.20842 1.30560 1.15857 0.80549 0.84127 0.80102 1.91143 1.66389 1.18778 1.60347 1.45455 1.35581 1.21433 1.36689 1.22148 0.95272 0.91150 0.92005 0.85325 1.21428 0.91113 1.00346 0.97539 1.21654 0.98006 0.97041 0.99310 1.21484 0.94005 1.02119 0.97763 1.21558 0.98303 0.97910 0.98110 1.21514 0.96604 0.98141 0.99225 1.21568 0.93954 1.02165 0.97282 1.20767 0.82950 0.79882 0.84634 1.90766 1.64735 1.46555 1.30290 1.77798 1.01337 1.14517 1.14067 0.92320 0.93408 0.92242 0.80848 0.83099 0.71608 0.88448 0.91144 0.91946 0.91766 0.91728 0.92015 0.91908 0.91720 0.91786 0.91275 0.91563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.70 13.29 55.43 0.74 -24.97 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.91 22.05 29.54 -169.99 -5.02 17.02 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.53 -15.09 9.23 -34.44 -0.32 -15.41 16 8 H 0.07 2.10 7.81 -52.49 -0.41 1.69 16 9 C 0.26 6.60 6.26 -5.19 -0.03 6.57 16 10 N -0.31 -7.42 3.67 -62.56 -0.23 -7.65 16 11 C 0.06 1.14 11.44 -17.24 -0.20 0.94 16 12 C -0.28 -5.40 9.98 -39.85 -0.40 -5.80 16 13 C 0.24 5.13 7.67 -154.18 -1.18 3.95 16 14 N -0.48 -8.36 2.83 -65.79 -0.19 -8.55 16 15 C 0.69 11.54 8.49 -88.02 -0.75 10.79 16 16 O -0.50 -10.78 16.83 5.33 0.09 -10.69 16 17 N -0.72 -7.44 5.04 -59.19 -0.30 -7.74 16 18 C 0.10 0.91 3.44 -68.21 -0.23 0.68 16 19 H 0.13 0.76 8.14 -51.92 -0.42 0.34 16 20 C -0.08 -0.62 2.12 -90.62 -0.19 -0.81 16 21 C -0.12 -1.16 4.67 -26.73 -0.12 -1.28 16 22 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 23 C -0.12 -0.78 5.92 -26.73 -0.16 -0.94 16 24 C -0.12 -0.62 5.92 -26.71 -0.16 -0.78 16 25 C -0.11 -0.58 5.11 -26.71 -0.14 -0.72 16 26 C 0.53 7.30 6.40 -10.56 -0.07 7.23 16 27 O -0.46 -6.93 15.90 5.59 0.09 -6.84 16 28 N -0.25 -6.12 11.33 31.48 0.36 -5.76 16 29 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 30 H 0.05 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.06 1.47 8.07 -51.93 -0.42 1.05 16 32 H 0.17 2.61 8.06 -52.49 -0.42 2.19 16 33 H 0.15 2.58 6.69 -52.48 -0.35 2.23 16 34 H 0.44 3.26 8.40 -40.82 -0.34 2.92 16 35 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.74 7.51 -51.93 -0.39 0.35 16 37 H 0.06 0.75 7.28 -51.93 -0.38 0.37 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.07 0.33 7.40 -51.93 -0.38 -0.05 16 LS Contribution 368.73 15.07 5.56 5.56 Total: -1.00 -34.92 368.73 -9.57 -44.49 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -6.46 Total: 0.09 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: -4.20 Total: 5.04 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: 0.38 Total: -54.67 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: 0.18 Total: -17.53 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.92 -9.57 -44.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567339250.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.145 kcal (2) G-P(sol) polarization free energy of solvation -34.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds