Wall clock time and date at job start Tue Mar 31 2020 16:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99966 * 2 1 4 4 H 1.48504 * 109.46894 * 270.00188 * 3 2 1 5 5 H 1.48500 * 109.47292 * 30.00366 * 3 2 1 6 6 H 1.48503 * 109.47006 * 150.00624 * 3 2 1 7 7 C 1.37881 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00062 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99730 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.46666 * 180.02562 * 9 7 2 11 11 C 1.34968 * 125.97895 * 125.00335 * 10 9 7 12 12 C 1.35237 * 107.85365 * 179.97438 * 11 10 9 13 13 C 1.40373 * 107.87433 * 359.97438 * 12 11 10 14 14 N 1.40395 * 125.96902 * 180.02562 * 13 12 11 15 15 C 1.33796 * 124.17933 * 185.14600 * 14 13 12 16 16 O 1.21537 * 123.76819 * 0.03797 * 15 14 13 17 17 N 1.34526 * 112.45867 * 180.30656 * 15 14 13 18 18 C 1.47308 * 106.61861 * 359.74688 * 17 15 14 19 19 H 1.09007 * 110.59685 * 118.52855 * 18 17 15 20 20 C 1.53003 * 110.59878 * 241.46929 * 18 17 15 21 21 C 1.53002 * 109.46910 * 54.17883 * 20 18 17 22 22 C 1.52999 * 109.47111 * 179.97438 * 21 20 18 23 23 C 1.52994 * 109.46921 * 60.00045 * 22 21 20 24 24 C 1.53002 * 109.47191 * 299.99906 * 23 22 21 25 25 C 1.52994 * 109.47423 * 294.17743 * 20 18 17 26 26 C 1.34766 * 124.17990 * 4.99901 * 14 13 12 27 27 O 1.21243 * 127.15918 * 359.97438 * 26 14 13 28 28 N 1.31196 * 108.06105 * 0.26365 * 13 12 11 29 29 H 0.97002 * 120.00140 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.47340 * 59.99833 * 9 7 2 31 31 H 1.08998 * 109.46858 * 299.99763 * 9 7 2 32 32 H 1.08002 * 126.07003 * 359.95410 * 11 10 9 33 33 H 1.08005 * 126.06443 * 180.02562 * 12 11 10 34 34 H 0.97005 * 126.68957 * 179.73259 * 17 15 14 35 35 H 1.09001 * 109.46749 * 174.17110 * 20 18 17 36 36 H 1.08995 * 109.47103 * 299.99829 * 21 20 18 37 37 H 1.09000 * 109.46816 * 59.99642 * 21 20 18 38 38 H 1.09005 * 109.47302 * 299.99989 * 22 21 20 39 39 H 1.09002 * 109.46981 * 180.02562 * 22 21 20 40 40 H 1.09000 * 109.47565 * 179.97438 * 23 22 21 41 41 H 1.09001 * 109.47675 * 59.99873 * 23 22 21 42 42 H 1.08995 * 109.47103 * 299.99889 * 24 23 22 43 43 H 1.09000 * 109.47267 * 179.97438 * 24 23 22 44 44 H 1.09002 * 109.47318 * 299.99886 * 25 20 18 45 45 H 1.08995 * 109.47007 * 59.99916 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 2.2421 -4.6224 0.8941 12 6 3.2605 -5.4428 0.5492 13 6 3.8679 -4.9154 -0.6012 14 7 4.9648 -5.4677 -1.2815 15 6 5.5783 -4.8840 -2.3174 16 8 5.2488 -3.8093 -2.7795 17 7 6.5968 -5.6224 -2.7940 18 6 6.6611 -6.8373 -1.9635 19 1 6.4936 -7.7266 -2.5713 20 6 8.0062 -6.9239 -1.2395 21 6 8.2464 -5.6333 -0.4536 22 6 9.5912 -5.7200 0.2708 23 6 10.7113 -5.9090 -0.7541 24 6 10.4711 -7.1996 -1.5400 25 6 9.1260 -7.1125 -2.2648 26 6 5.5317 -6.6499 -0.9700 27 8 5.2035 -7.4083 -0.0828 28 7 3.2347 -3.8133 -0.9266 29 1 -0.4850 0.8401 0.0004 30 1 0.6240 -2.5567 -0.8902 31 1 0.6247 -2.5571 0.8897 32 1 1.5783 -4.7521 1.7361 33 1 3.5538 -6.3444 1.0665 34 1 7.1758 -5.3985 -3.5394 35 1 7.9955 -7.7705 -0.5531 36 1 8.2570 -4.7866 -1.1400 37 1 7.4485 -5.4989 0.2768 38 1 9.5802 -6.5667 0.9573 39 1 9.7620 -4.8007 0.8311 40 1 11.6694 -5.9703 -0.2381 41 1 10.7223 -5.0623 -1.4406 42 1 10.4601 -8.0462 -0.8536 43 1 11.2689 -7.3339 -2.2705 44 1 8.9550 -8.0320 -2.8247 45 1 9.1367 -6.2659 -2.9511 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567339250.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:18 Heat of formation + Delta-G solvation = 4.066244 kcal Electronic energy + Delta-G solvation = -29040.544207 eV Core-core repulsion = 25059.296939 eV Total energy + Delta-G solvation = -3981.247268 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.90751 -41.95174 -39.88453 -39.40017 -37.22335 -36.28592 -35.30734 -33.03006 -32.09001 -31.65717 -31.13235 -28.98712 -27.86300 -25.72738 -24.48720 -23.92044 -23.34549 -22.37080 -21.42328 -20.99646 -20.31993 -19.09223 -18.72507 -18.27852 -18.03623 -17.40846 -16.86402 -16.65772 -16.27807 -16.13361 -15.90732 -15.53590 -15.25372 -15.15082 -14.88860 -14.73414 -14.61986 -14.30831 -14.10301 -13.75675 -13.35685 -13.12729 -13.02224 -12.98018 -12.77972 -12.37901 -12.29513 -12.22553 -12.03250 -11.99442 -11.78940 -11.58511 -11.40451 -11.32012 -11.14558 -10.90842 -10.76592 -10.47577 -10.02471 -9.43144 -8.38305 -6.50854 0.42266 0.70173 0.95587 1.32717 1.35390 1.43938 1.47210 1.87512 2.16298 2.27211 2.32752 2.80365 2.94248 3.35735 3.62377 3.73961 3.80844 3.90648 4.09596 4.21338 4.27541 4.37120 4.41625 4.46130 4.55119 4.60320 4.63714 4.67915 4.71472 4.83785 4.92242 4.98245 5.00937 5.13916 5.22776 5.25765 5.29736 5.39247 5.43487 5.52083 5.54298 5.60067 5.71569 5.78691 5.94188 6.16925 6.25594 6.58542 6.84162 7.04826 7.18673 8.70237 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016058 B = 0.003118 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.269459 B = 8979.006823 C = 9752.381856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.022 3.978 3 Si 0.968 3.032 4 H -0.276 1.276 5 H -0.264 1.264 6 H -0.275 1.275 7 C -0.550 4.550 8 H 0.045 0.955 9 C 0.272 3.728 10 N -0.341 5.341 11 C 0.069 3.931 12 C -0.281 4.281 13 C 0.244 3.756 14 N -0.496 5.496 15 C 0.689 3.311 16 O -0.561 6.561 17 N -0.692 5.692 18 C 0.117 3.883 19 H 0.179 0.821 20 C -0.076 4.076 21 C -0.124 4.124 22 C -0.115 4.115 23 C -0.120 4.120 24 C -0.115 4.115 25 C -0.108 4.108 26 C 0.526 3.474 27 O -0.470 6.470 28 N -0.310 5.310 29 H 0.274 0.726 30 H 0.022 0.978 31 H 0.070 0.930 32 H 0.216 0.784 33 H 0.173 0.827 34 H 0.455 0.545 35 H 0.110 0.890 36 H 0.055 0.945 37 H 0.029 0.971 38 H 0.070 0.930 39 H 0.050 0.950 40 H 0.068 0.932 41 H 0.056 0.944 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.097 0.903 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.995 -20.076 -2.534 29.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.179 4.179 3 Si 0.792 3.208 4 H -0.202 1.202 5 H -0.189 1.189 6 H -0.200 1.200 7 C -0.588 4.588 8 H 0.063 0.937 9 C 0.154 3.846 10 N -0.124 5.124 11 C -0.079 4.079 12 C -0.312 4.312 13 C -0.009 4.009 14 N -0.239 5.239 15 C 0.389 3.611 16 O -0.434 6.434 17 N -0.359 5.359 18 C 0.010 3.990 19 H 0.196 0.804 20 C -0.095 4.095 21 C -0.162 4.162 22 C -0.152 4.152 23 C -0.158 4.158 24 C -0.153 4.153 25 C -0.146 4.146 26 C 0.315 3.685 27 O -0.338 6.338 28 N -0.139 5.139 29 H 0.083 0.917 30 H 0.039 0.961 31 H 0.087 0.913 32 H 0.233 0.767 33 H 0.191 0.809 34 H 0.304 0.696 35 H 0.129 0.871 36 H 0.074 0.926 37 H 0.048 0.952 38 H 0.089 0.911 39 H 0.069 0.931 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.089 0.911 43 H 0.096 0.904 44 H 0.115 0.885 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 20.262 -18.708 -3.087 27.750 hybrid contribution -0.001 0.941 0.350 1.004 sum 20.261 -17.767 -2.737 27.086 Atomic orbital electron populations 1.69971 1.06973 1.28836 1.49785 1.25671 0.95879 1.02509 0.93799 0.85414 0.78459 0.78465 0.78474 1.20209 1.18883 1.19977 1.21354 0.93111 0.91268 1.53068 0.93697 1.19415 0.85491 0.81203 0.98529 1.49156 1.23256 1.20453 1.19491 1.23265 1.00023 0.88050 0.96606 1.21315 1.02520 1.06931 1.00442 1.19276 0.91550 0.94827 0.95198 1.43288 1.27755 1.22024 1.30863 1.16110 0.81415 0.83781 0.79844 1.91098 1.68468 1.21588 1.62196 1.45317 1.33421 1.20798 1.36393 1.22499 0.93930 0.91613 0.90983 0.80388 1.21471 0.90743 0.99282 0.98048 1.21644 0.97852 0.98005 0.98698 1.21472 0.93807 1.01770 0.98193 1.21557 0.97775 0.98725 0.97730 1.21518 0.97001 0.97277 0.99468 1.21603 0.92634 1.03743 0.96602 1.21691 0.83401 0.78381 0.85074 1.90747 1.65344 1.46589 1.31112 1.77708 1.03062 1.17074 1.16057 0.91686 0.96054 0.91253 0.76705 0.80934 0.69619 0.87147 0.92639 0.95202 0.91123 0.93092 0.91376 0.92513 0.91070 0.90428 0.88468 0.91260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.25 13.29 21.45 0.28 -52.96 16 2 C 0.02 1.27 5.46 84.66 0.46 1.74 16 3 Si 0.97 45.90 29.54 68.60 2.03 47.92 16 4 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 5 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 6 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 7 C -0.55 -32.70 9.23 25.60 0.24 -32.47 16 8 H 0.04 2.84 7.81 -2.91 -0.02 2.82 16 9 C 0.27 14.59 6.26 85.63 0.54 15.12 16 10 N -0.34 -16.69 3.67 -351.85 -1.29 -17.98 16 11 C 0.07 2.65 11.44 83.52 0.96 3.60 16 12 C -0.28 -10.62 9.98 22.10 0.22 -10.40 16 13 C 0.24 10.59 7.67 133.24 1.02 11.61 16 14 N -0.50 -17.34 2.83 -599.32 -1.70 -19.04 16 15 C 0.69 23.33 8.49 179.44 1.52 24.86 16 16 O -0.56 -25.57 16.83 -3.83 -0.06 -25.63 16 17 N -0.69 -13.07 5.04 -459.60 -2.32 -15.39 16 18 C 0.12 1.71 3.44 44.37 0.15 1.86 16 19 H 0.18 1.10 8.14 -2.38 -0.02 1.08 16 20 C -0.08 -0.87 2.12 -10.79 -0.02 -0.89 16 21 C -0.12 -2.26 4.67 30.59 0.14 -2.12 16 22 C -0.11 -1.71 5.92 30.59 0.18 -1.52 16 23 C -0.12 -1.29 5.92 30.59 0.18 -1.11 16 24 C -0.12 -0.77 5.92 30.61 0.18 -0.59 16 25 C -0.11 -0.64 5.11 30.61 0.16 -0.49 16 26 C 0.53 13.72 6.40 87.94 0.56 14.28 16 27 O -0.47 -13.49 15.90 -2.92 -0.05 -13.54 16 28 N -0.31 -16.11 11.33 -54.33 -0.62 -16.72 16 29 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 30 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.07 3.51 8.07 -2.39 -0.02 3.49 16 32 H 0.22 6.09 8.06 -2.91 -0.02 6.07 16 33 H 0.17 5.68 6.69 -2.91 -0.02 5.66 16 34 H 0.46 5.73 8.40 -92.70 -0.78 4.95 16 35 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.05 1.16 7.51 -2.39 -0.02 1.14 16 37 H 0.03 0.72 7.28 -2.39 -0.02 0.71 16 38 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 39 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 43 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 44 H 0.10 0.15 8.14 -2.39 -0.02 0.13 16 45 H 0.07 0.41 7.40 -2.39 -0.02 0.39 16 Total: -1.00 -81.81 368.73 3.01 -78.80 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: 0.24 Total: 11.06 kcal Atomic # 6 Polarization: 16.99 SS G_CDS: 6.49 Total: 23.48 kcal Atomic # 7 Polarization: -116.46 SS G_CDS: -5.64 Total: -122.10 kcal Atomic # 8 Polarization: -39.06 SS G_CDS: -0.11 Total: -39.17 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.92 kcal Total: -81.81 3.01 -78.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567339250.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.866 kcal (2) G-P(sol) polarization free energy of solvation -81.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds