Wall clock time and date at job start Tue Mar 31 2020 16:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86801 * 119.99916 * 2 1 4 4 H 1.48500 * 109.47035 * 269.99988 * 3 2 1 5 5 H 1.48497 * 109.47118 * 30.00239 * 3 2 1 6 6 H 1.48503 * 109.46933 * 150.00143 * 3 2 1 7 7 C 1.40046 * 120.00235 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00660 * 179.97438 * 7 2 1 9 9 C 1.46378 * 119.99892 * 359.97438 * 7 2 1 10 10 O 1.21697 * 120.00087 * 354.97687 * 9 7 2 11 11 N 1.34772 * 120.00458 * 174.97618 * 9 7 2 12 12 C 1.46968 * 120.59926 * 185.37591 * 11 9 7 13 13 C 1.53367 * 108.63470 * 235.20549 * 12 11 9 14 14 N 1.46961 * 108.63647 * 310.57389 * 13 12 11 15 15 C 1.34775 * 120.59693 * 235.20691 * 14 13 12 16 16 O 1.21281 * 119.99897 * 4.77811 * 15 14 13 17 17 C 1.50701 * 120.00104 * 184.78058 * 15 14 13 18 18 H 1.08998 * 109.70901 * 325.14536 * 17 15 14 19 19 C 1.53308 * 109.70392 * 85.61810 * 17 15 14 20 20 C 1.53123 * 109.52740 * 169.19898 * 19 17 15 21 21 C 1.53351 * 109.52699 * 290.06453 * 20 19 17 22 22 C 1.50866 * 108.41409 * 49.96545 * 21 20 19 23 23 N 1.33576 * 128.03061 * 163.30371 * 22 21 20 24 24 C 1.30757 * 109.14696 * 180.13885 * 23 22 21 25 25 N 1.35307 * 108.76481 * 359.97438 * 24 23 22 26 26 H 0.97006 * 126.49385 * 179.97438 * 25 24 23 27 27 C 1.35031 * 123.99250 * 343.40394 * 22 21 20 28 28 C 1.46967 * 118.81130 * 55.47648 * 14 13 12 29 29 C 1.46968 * 120.59148 * 5.35179 * 11 9 7 30 30 H 0.97000 * 120.00269 * 0.02562 * 1 2 3 31 31 H 1.08993 * 109.60931 * 115.46108 * 12 11 9 32 32 H 1.08999 * 109.60316 * 354.94699 * 12 11 9 33 33 H 1.09000 * 109.60990 * 190.82689 * 13 12 11 34 34 H 1.09007 * 109.61359 * 70.31653 * 13 12 11 35 35 H 1.08996 * 109.35949 * 49.22489 * 19 17 15 36 36 H 1.09003 * 109.50981 * 289.26138 * 19 17 15 37 37 H 1.09003 * 109.46172 * 170.04598 * 20 19 17 38 38 H 1.08998 * 109.45163 * 50.07501 * 20 19 17 39 39 H 1.09003 * 109.67571 * 290.23531 * 21 20 19 40 40 H 1.08998 * 109.70664 * 169.71764 * 21 20 19 41 41 H 1.07996 * 125.61345 * 179.97438 * 24 23 22 42 42 H 1.08999 * 109.61209 * 64.27001 * 28 14 13 43 43 H 1.09007 * 109.61236 * 184.77836 * 28 14 13 44 44 H 1.08993 * 109.61033 * 244.54268 * 29 11 9 45 45 H 1.08998 * 109.60869 * 4.88144 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4882 2.0464 -1.4001 5 1 1.4381 2.6526 0.7001 6 1 3.5383 1.4402 0.7000 7 6 2.0070 -1.2128 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0617 -2.4826 0.0922 11 7 1.9450 -3.6454 -0.1033 12 6 1.2191 -4.9177 -0.2229 13 6 1.6921 -5.8585 0.8922 14 7 3.1616 -5.8792 0.8973 15 6 3.8316 -7.0441 0.7946 16 8 3.2253 -8.0781 0.6098 17 6 5.3341 -7.0619 0.9094 18 1 5.7472 -6.1544 0.4690 19 6 5.7387 -7.1479 2.3856 20 6 7.2391 -7.4358 2.4892 21 6 7.5194 -8.8691 2.0214 22 6 6.8491 -9.0741 0.6855 23 7 7.0772 -10.0384 -0.2103 24 6 6.2909 -9.8619 -1.2400 25 7 5.5296 -8.7645 -1.0233 26 1 4.8590 -8.4001 -1.6221 27 6 5.8834 -8.2685 0.1939 28 6 3.8874 -4.6075 1.0226 29 6 3.4145 -3.6662 -0.0982 30 1 -0.4850 0.8400 -0.0004 31 1 1.4270 -5.3676 -1.1937 32 1 0.1487 -4.7391 -0.1213 33 1 1.3127 -6.8636 0.7082 34 1 1.3280 -5.4978 1.8542 35 1 5.1805 -7.9507 2.8671 36 1 5.5152 -6.2025 2.8800 37 1 7.5600 -7.3224 3.5247 38 1 7.7875 -6.7347 1.8601 39 1 7.1172 -9.5770 2.7463 40 1 8.5942 -9.0190 1.9197 41 1 6.2550 -10.4889 -2.1186 42 1 3.6760 -4.1596 1.9936 43 1 4.9583 -4.7862 0.9247 44 1 3.7786 -4.0268 -1.0601 45 1 3.7939 -2.6605 0.0828 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572853620.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:49 Heat of formation + Delta-G solvation = -6.641288 kcal Electronic energy + Delta-G solvation = -29168.736910 eV Core-core repulsion = 25187.025328 eV Total energy + Delta-G solvation = -3981.711581 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.47077 -40.16371 -38.12294 -36.63537 -35.95755 -33.40091 -33.05171 -32.57683 -31.36111 -30.07943 -29.09967 -27.50351 -26.19192 -24.51537 -23.30538 -22.41933 -22.27753 -21.60496 -20.11029 -19.07431 -18.73955 -17.79668 -17.53158 -16.26668 -15.95365 -15.68299 -15.34669 -15.25344 -14.75354 -14.65392 -14.51948 -14.27965 -14.12964 -13.84514 -13.72690 -13.54119 -13.16088 -12.78203 -12.58603 -12.28924 -12.03469 -11.74692 -11.57044 -11.50288 -11.28561 -11.18114 -11.17059 -11.07865 -11.02648 -10.85296 -10.34982 -10.19618 -10.10694 -9.93404 -9.65859 -9.01359 -8.78039 -8.26379 -7.75171 -7.37648 -6.33415 -4.80005 1.90448 2.49535 2.90774 3.01524 3.04538 3.06223 3.12097 3.14544 3.95924 4.18726 4.31989 4.37331 4.42158 4.45054 4.59704 4.76609 4.93515 4.99352 5.09240 5.17052 5.20270 5.26078 5.41381 5.42559 5.47083 5.50604 5.64311 5.68512 5.73697 5.81256 5.83001 5.91315 5.93552 6.04744 6.13401 6.16175 6.23775 6.39435 6.58487 6.63415 7.26423 7.30858 7.37706 7.41132 7.94385 7.96874 8.09438 8.16569 8.87965 9.24242 10.41944 10.60509 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020315 B = 0.002876 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.946584 B = 9732.535494 C =10299.530471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.073 0.927 9 C 0.558 3.442 10 O -0.574 6.574 11 N -0.643 5.643 12 C 0.108 3.892 13 C 0.098 3.902 14 N -0.600 5.600 15 C 0.513 3.487 16 O -0.543 6.543 17 C -0.032 4.032 18 H 0.107 0.893 19 C -0.103 4.103 20 C -0.115 4.115 21 C -0.034 4.034 22 C 0.007 3.993 23 N -0.489 5.489 24 C 0.178 3.822 25 N -0.546 5.546 26 H 0.420 0.580 27 C 0.000 4.000 28 C 0.084 3.916 29 C 0.109 3.891 30 H 0.270 0.730 31 H 0.045 0.955 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.207 0.793 42 H 0.078 0.922 43 H 0.087 0.913 44 H 0.046 0.954 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.733 -11.963 1.821 19.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.581 4.581 8 H 0.091 0.909 9 C 0.365 3.635 10 O -0.457 6.457 11 N -0.381 5.381 12 C -0.017 4.017 13 C -0.025 4.025 14 N -0.333 5.333 15 C 0.300 3.700 16 O -0.421 6.421 17 C -0.055 4.055 18 H 0.124 0.876 19 C -0.142 4.142 20 C -0.153 4.153 21 C -0.072 4.072 22 C -0.124 4.124 23 N -0.208 5.208 24 C -0.104 4.104 25 N -0.147 5.147 26 H 0.258 0.742 27 C -0.118 4.118 28 C -0.039 4.039 29 C -0.017 4.017 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.115 0.885 33 H 0.110 0.890 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.224 0.776 42 H 0.096 0.904 43 H 0.105 0.895 44 H 0.064 0.936 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 14.110 -13.035 1.870 19.300 hybrid contribution -0.517 1.579 -0.650 1.784 sum 13.593 -11.456 1.219 17.819 Atomic orbital electron populations 1.69998 1.07123 1.27542 1.34726 1.25732 0.94633 1.00387 0.92519 0.86374 0.80163 0.81364 0.78911 1.19702 1.20383 1.18787 1.20933 0.93488 0.89143 1.54575 0.90871 1.18308 0.86967 0.82100 0.76157 1.90608 1.14356 1.85859 1.54841 1.48198 1.04307 1.05904 1.79733 1.21494 0.99343 0.85109 0.95715 1.22120 0.78625 1.01327 1.00421 1.48132 1.07497 1.06275 1.71366 1.20483 0.89320 0.83389 0.76760 1.90693 1.69802 1.32107 1.49512 1.19931 0.92109 0.95689 0.97732 0.87578 1.21511 0.97236 1.03401 0.92020 1.21600 0.95119 0.96557 1.02030 1.19942 0.99936 0.96612 0.90747 1.20422 0.99815 0.94179 0.97947 1.69963 1.24428 1.24657 1.01712 1.24958 0.93581 0.91040 1.00867 1.42860 1.31983 1.23516 1.16331 0.74176 1.20222 1.02233 1.00617 0.88738 1.22546 0.96019 0.84057 1.01324 1.21873 0.83482 1.00535 0.95766 0.91915 0.93658 0.88507 0.89027 0.91093 0.90694 0.90095 0.90414 0.91177 0.90672 0.90387 0.77648 0.90367 0.89513 0.93577 0.87475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.91 11.84 55.55 0.66 -21.25 16 2 C 0.09 2.30 5.50 -17.37 -0.10 2.20 16 3 Si 0.91 18.83 29.56 -169.99 -5.02 13.80 16 4 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 5 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 7 C -0.55 -14.14 8.86 -35.63 -0.32 -14.46 16 8 H 0.07 1.68 5.67 -52.49 -0.30 1.39 16 9 C 0.56 14.82 7.61 -12.99 -0.10 14.72 16 10 O -0.57 -17.67 14.45 5.19 0.08 -17.59 16 11 N -0.64 -13.32 2.95 -173.88 -0.51 -13.83 16 12 C 0.11 2.00 6.60 -3.60 -0.02 1.97 16 13 C 0.10 1.55 6.60 -3.60 -0.02 1.52 16 14 N -0.60 -8.32 2.94 -172.21 -0.51 -8.83 16 15 C 0.51 7.01 6.76 -10.99 -0.07 6.93 16 16 O -0.54 -9.16 15.45 5.56 0.09 -9.08 16 17 C -0.03 -0.35 2.13 -92.78 -0.20 -0.54 16 18 H 0.11 0.96 6.08 -51.93 -0.32 0.64 16 19 C -0.10 -0.93 5.21 -26.51 -0.14 -1.07 16 20 C -0.12 -0.87 5.90 -26.49 -0.16 -1.02 16 21 C -0.03 -0.33 6.30 -27.62 -0.17 -0.50 16 22 C 0.01 0.09 6.98 -82.89 -0.58 -0.49 16 23 N -0.49 -6.55 11.25 -10.74 -0.12 -6.67 16 24 C 0.18 1.93 13.05 -89.92 -1.17 0.76 16 25 N -0.55 -6.05 5.79 -10.28 -0.06 -6.11 16 26 H 0.42 4.05 8.96 -40.82 -0.37 3.68 16 27 C 0.00 0.00 5.88 -81.85 -0.48 -0.48 16 28 C 0.08 1.05 6.51 -3.37 -0.02 1.03 16 29 C 0.11 1.73 6.50 -3.37 -0.02 1.71 16 30 H 0.27 7.02 8.29 -40.82 -0.34 6.68 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.10 2.00 6.99 -51.93 -0.36 1.64 16 33 H 0.09 1.42 6.99 -51.93 -0.36 1.06 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.21 1.38 8.06 -52.49 -0.42 0.95 16 42 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.09 0.78 5.37 -51.93 -0.28 0.50 16 44 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.11 1.75 5.34 -51.93 -0.28 1.47 16 LS Contribution 359.01 15.07 5.41 5.41 Total: -1.00 -36.39 359.01 -9.61 -46.00 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -6.04 Total: 5.86 kcal Atomic # 6 Polarization: 15.85 SS G_CDS: -3.58 Total: 12.28 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: -0.54 Total: -56.69 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: 0.16 Total: -26.67 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.02 Total: 13.80 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -36.39 -9.61 -46.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572853620.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.359 kcal (2) G-P(sol) polarization free energy of solvation -36.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds