Wall clock time and date at job start Tue Mar 31 2020 17:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00151 * 2 1 4 4 C 1.52998 * 109.47341 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47083 * 64.99948 * 4 3 2 6 6 C 1.46504 * 120.00340 * 270.00161 * 5 4 3 7 7 C 1.50700 * 109.47111 * 270.00160 * 6 5 4 8 8 H 1.08001 * 119.99744 * 359.97438 * 7 6 5 9 9 C 1.37873 * 119.99874 * 180.02562 * 7 6 5 10 10 N 1.31513 * 119.99998 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00007 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47432 * 89.99843 * 11 9 7 13 13 H 1.48496 * 109.47179 * 209.99704 * 11 9 7 14 14 H 1.48498 * 109.46925 * 329.99798 * 11 9 7 15 15 C 1.34779 * 119.99645 * 90.00358 * 5 4 3 16 16 O 1.21596 * 119.99839 * 180.02562 * 15 5 4 17 17 N 1.34776 * 120.00097 * 359.97438 * 15 5 4 18 18 C 1.40323 * 119.99671 * 185.29836 * 17 15 5 19 19 C 1.40914 * 119.92693 * 33.03831 * 18 17 15 20 20 C 1.35936 * 119.66554 * 179.97438 * 19 18 17 21 21 C 1.50696 * 120.28177 * 179.97438 * 20 19 18 22 22 C 1.40941 * 119.44021 * 0.02562 * 20 19 18 23 23 N 1.32656 * 132.22513 * 180.02562 * 22 20 19 24 24 C 1.33478 * 109.15063 * 179.97438 * 23 22 20 25 25 C 1.35148 * 108.60662 * 359.97438 * 24 23 22 26 26 N 1.36809 * 107.18107 * 359.97438 * 25 24 23 27 27 C 1.35509 * 119.91711 * 213.03457 * 18 17 15 28 28 H 1.09002 * 109.46688 * 299.99779 * 1 2 3 29 29 H 1.09001 * 109.47392 * 59.99485 * 1 2 3 30 30 H 1.09002 * 109.47327 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46955 * 60.00196 * 3 2 1 32 32 H 1.08999 * 109.47486 * 300.00461 * 3 2 1 33 33 H 1.09007 * 109.47056 * 305.00593 * 4 3 2 34 34 H 1.08994 * 109.47333 * 185.00400 * 4 3 2 35 35 H 1.09001 * 109.46457 * 29.99742 * 6 5 4 36 36 H 1.08996 * 109.46943 * 149.99752 * 6 5 4 37 37 H 0.97003 * 119.99843 * 180.02562 * 10 9 7 38 38 H 0.96998 * 120.00147 * 5.29759 * 17 15 5 39 39 H 1.08003 * 120.16649 * 0.02562 * 19 18 17 40 40 H 1.09001 * 109.46715 * 270.02165 * 21 20 19 41 41 H 1.09001 * 109.47053 * 30.01573 * 21 20 19 42 42 H 1.08994 * 109.47868 * 150.02325 * 21 20 19 43 43 H 1.07993 * 125.69224 * 180.02562 * 24 23 22 44 44 H 1.07994 * 126.40688 * 180.25952 * 25 24 23 45 45 H 1.07999 * 119.74570 * 0.02562 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.1052 -0.8921 -1.3429 7 6 5.5010 -1.2979 -0.9450 8 1 6.2197 -0.5460 -0.6546 9 6 5.8606 -2.6289 -0.9529 10 7 4.9854 -3.5444 -1.3071 11 14 7.5908 -3.1318 -0.4605 12 1 7.6355 -3.3847 1.0022 13 1 7.9730 -4.3683 -1.1885 14 1 8.5395 -2.0421 -0.8036 15 6 4.2615 1.3338 -2.3218 16 8 4.6264 0.8190 -3.3612 17 7 4.1419 2.6737 -2.2391 18 6 4.3313 3.4668 -3.3811 19 6 3.9621 2.9738 -4.6485 20 6 4.1474 3.7468 -5.7512 21 6 3.7582 3.2332 -7.1134 22 6 4.7078 5.0323 -5.6098 23 7 4.9951 5.9814 -6.4910 24 6 5.5185 7.0292 -5.8509 25 6 5.5677 6.7471 -4.5301 26 7 5.0572 5.4885 -4.3664 27 6 4.8687 4.7051 -3.2624 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8515 0.5681 0.8409 34 1 3.9785 2.1764 0.0890 35 1 3.3852 -1.3629 -0.6735 36 1 3.9119 -1.2114 -2.3670 37 1 5.2383 -4.4808 -1.3123 38 1 3.9249 3.0898 -1.3901 39 1 3.5333 1.9870 -4.7432 40 1 4.6050 2.7130 -7.5611 41 1 2.9190 2.5444 -7.0158 42 1 3.4691 4.0705 -7.7485 43 1 5.8469 7.9491 -6.3115 44 1 5.9364 7.3959 -3.7494 45 1 5.1496 5.0762 -2.2879 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590841516.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:28 Heat of formation + Delta-G solvation = 33.281107 kcal Electronic energy + Delta-G solvation = -28655.500458 eV Core-core repulsion = 24675.520042 eV Total energy + Delta-G solvation = -3979.980416 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.75001 -40.19233 -37.96858 -37.27518 -35.02459 -34.72716 -34.08039 -32.61702 -29.73760 -29.68600 -29.04637 -27.24057 -26.85076 -26.02195 -23.49701 -22.96246 -22.86335 -21.88887 -21.21211 -19.76549 -18.23699 -17.44897 -17.10025 -16.52578 -16.21507 -16.14011 -15.91013 -15.61096 -15.12977 -14.86859 -14.63528 -14.30346 -14.03831 -13.99634 -13.71860 -13.35123 -13.21717 -13.01251 -12.58625 -12.27795 -12.04759 -12.01781 -11.89161 -11.76664 -11.68244 -11.30791 -10.97499 -10.92978 -10.67940 -10.47963 -10.15774 -10.10620 -9.82531 -9.61618 -9.55783 -9.41872 -8.40201 -8.29844 -7.81783 -7.59261 -6.01697 -4.06102 0.76901 1.33679 2.40132 2.85268 3.14094 3.30797 3.37888 3.41658 3.45655 3.77408 3.93050 4.16311 4.28268 4.46039 4.47889 4.68721 4.94577 5.07878 5.15797 5.20660 5.27393 5.30735 5.33036 5.39753 5.41364 5.45555 5.47398 5.58612 5.72278 5.78424 5.80139 6.00998 6.04906 6.07263 6.24243 6.38902 6.63854 6.66444 6.73078 7.10506 7.29442 7.42021 7.49479 7.59356 7.89293 7.95428 8.25355 8.44387 8.91513 9.08800 9.58181 11.06160 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011173 B = 0.003426 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.517430 B = 8170.754859 C = 9410.247872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.369 6.369 3 C 0.043 3.957 4 C 0.110 3.890 5 N -0.594 5.594 6 C 0.264 3.736 7 C -0.529 4.529 8 H 0.055 0.945 9 C 0.063 3.937 10 N -0.892 5.892 11 Si 0.896 3.104 12 H -0.281 1.281 13 H -0.285 1.285 14 H -0.275 1.275 15 C 0.698 3.302 16 O -0.560 6.560 17 N -0.691 5.691 18 C 0.190 3.810 19 C -0.097 4.097 20 C -0.036 4.036 21 C -0.100 4.100 22 C 0.216 3.784 23 N -0.494 5.494 24 C 0.023 3.977 25 C -0.105 4.105 26 N -0.340 5.340 27 C -0.024 4.024 28 H 0.035 0.965 29 H 0.036 0.964 30 H 0.085 0.915 31 H 0.053 0.947 32 H 0.044 0.956 33 H 0.099 0.901 34 H 0.073 0.927 35 H 0.050 0.950 36 H 0.042 0.958 37 H 0.263 0.737 38 H 0.402 0.598 39 H 0.159 0.841 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.177 0.823 44 H 0.178 0.822 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.993 18.426 0.375 19.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.287 6.287 3 C -0.036 4.036 4 C -0.015 4.015 5 N -0.328 5.328 6 C 0.145 3.855 7 C -0.568 4.568 8 H 0.073 0.927 9 C -0.139 4.139 10 N -0.531 5.531 11 Si 0.724 3.276 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.200 1.200 15 C 0.399 3.601 16 O -0.435 6.435 17 N -0.342 5.342 18 C 0.090 3.910 19 C -0.121 4.121 20 C -0.039 4.039 21 C -0.158 4.158 22 C -0.029 4.029 23 N -0.214 5.214 24 C -0.130 4.130 25 C -0.237 4.237 26 N -0.010 5.010 27 C -0.150 4.150 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.104 0.896 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.117 0.883 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.239 0.761 39 H 0.177 0.823 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.194 0.806 44 H 0.195 0.805 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -6.771 17.491 -1.128 18.790 hybrid contribution 0.935 0.356 1.967 2.207 sum -5.836 17.847 0.839 18.795 Atomic orbital electron populations 1.22713 0.81851 1.02743 0.99149 1.88103 1.18858 1.26581 1.95136 1.23110 0.95102 0.85768 0.99607 1.21493 0.91402 0.98477 0.90086 1.47595 1.66995 1.09567 1.08621 1.19323 0.96824 0.70164 0.99160 1.21463 0.97469 0.92246 1.45630 0.92675 1.24892 0.97352 0.96392 0.95297 1.69935 1.34326 1.01020 1.47804 0.86538 0.84677 0.78104 0.78312 1.20704 1.21104 1.20033 1.15930 0.79206 0.79646 0.85285 1.90932 1.52001 1.71685 1.28931 1.42958 1.75055 1.06095 1.10078 1.16663 0.96763 0.89509 0.88029 1.21192 1.00260 1.01119 0.89577 1.18890 0.98456 0.89073 0.97471 1.20633 1.01983 1.01458 0.91682 1.20756 1.04972 0.96738 0.80386 1.70715 1.19780 1.00685 1.30243 1.22417 1.01845 0.98576 0.90171 1.22555 1.13834 0.87111 1.00238 1.42354 1.38744 1.12414 1.07488 1.20708 1.09096 0.93951 0.91252 0.94644 0.94554 0.89622 0.92934 0.93729 0.88295 0.90866 0.93244 0.94005 0.92766 0.76068 0.82339 0.90378 0.90802 0.90552 0.80560 0.80459 0.82196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.49 16 2 O -0.37 -5.87 9.53 -35.23 -0.34 -6.20 16 3 C 0.04 0.54 6.28 37.16 0.23 0.77 16 4 C 0.11 1.59 5.62 -4.04 -0.02 1.57 16 5 N -0.59 -11.77 2.42 -180.80 -0.44 -12.21 16 6 C 0.26 6.71 4.98 -5.19 -0.03 6.69 16 7 C -0.53 -14.73 9.39 -34.44 -0.32 -15.05 16 8 H 0.05 1.53 7.81 -52.49 -0.41 1.12 16 9 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 10 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 11 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 C 0.70 13.68 8.03 -86.92 -0.70 12.99 16 16 O -0.56 -13.44 13.59 5.28 0.07 -13.37 16 17 N -0.69 -9.87 5.22 -14.40 -0.08 -9.95 16 18 C 0.19 2.73 6.24 -83.93 -0.52 2.21 16 19 C -0.10 -1.51 8.30 -39.40 -0.33 -1.83 16 20 C -0.04 -0.53 5.90 -104.43 -0.62 -1.15 16 21 C -0.10 -1.24 10.02 36.00 0.36 -0.88 16 22 C 0.22 3.29 7.51 -156.05 -1.17 2.11 16 23 N -0.49 -7.47 11.31 -12.78 -0.14 -7.61 16 24 C 0.02 0.28 11.83 -17.94 -0.21 0.07 16 25 C -0.10 -1.17 11.76 -16.43 -0.19 -1.36 16 26 N -0.34 -4.58 2.95 -62.46 -0.18 -4.76 16 27 C -0.02 -0.30 10.84 -16.37 -0.18 -0.47 16 28 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.10 1.54 8.07 -51.93 -0.42 1.13 16 34 H 0.07 0.76 6.29 -51.93 -0.33 0.44 16 35 H 0.05 1.31 7.11 -51.93 -0.37 0.94 16 36 H 0.04 1.21 7.42 -51.93 -0.39 0.83 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.40 4.23 6.50 -40.82 -0.27 3.97 16 39 H 0.16 2.71 6.44 -52.48 -0.34 2.37 16 40 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16 42 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 43 H 0.18 1.46 8.06 -52.49 -0.42 1.04 16 44 H 0.18 1.30 8.06 -52.49 -0.42 0.88 16 45 H 0.16 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 379.50 15.07 5.72 5.72 Total: -1.00 -36.01 379.50 -8.65 -44.66 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -6.29 Total: 3.70 kcal Atomic # 6 Polarization: 11.52 SS G_CDS: -2.68 Total: 8.83 kcal Atomic # 7 Polarization: -60.00 SS G_CDS: -0.10 Total: -60.11 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -0.26 Total: -19.57 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.01 -8.65 -44.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590841516.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.939 kcal (2) G-P(sol) polarization free energy of solvation -36.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds