Wall clock time and date at job start Tue Mar 31 2020 17:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00151 * 2 1 4 4 C 1.52998 * 109.47341 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47083 * 64.99948 * 4 3 2 6 6 C 1.46504 * 120.00340 * 270.00161 * 5 4 3 7 7 C 1.50700 * 109.47111 * 270.00160 * 6 5 4 8 8 H 1.08001 * 119.99744 * 359.97438 * 7 6 5 9 9 C 1.37873 * 119.99874 * 180.02562 * 7 6 5 10 10 N 1.31513 * 119.99998 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00007 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47432 * 89.99843 * 11 9 7 13 13 H 1.48496 * 109.47179 * 209.99704 * 11 9 7 14 14 H 1.48498 * 109.46925 * 329.99798 * 11 9 7 15 15 C 1.34779 * 119.99645 * 90.00358 * 5 4 3 16 16 O 1.21596 * 119.99839 * 180.02562 * 15 5 4 17 17 N 1.34776 * 120.00097 * 359.97438 * 15 5 4 18 18 C 1.40323 * 119.99671 * 185.29836 * 17 15 5 19 19 C 1.40914 * 119.92693 * 33.03831 * 18 17 15 20 20 C 1.35936 * 119.66554 * 179.97438 * 19 18 17 21 21 C 1.50696 * 120.28177 * 179.97438 * 20 19 18 22 22 C 1.40941 * 119.44021 * 0.02562 * 20 19 18 23 23 N 1.32656 * 132.22513 * 180.02562 * 22 20 19 24 24 C 1.33478 * 109.15063 * 179.97438 * 23 22 20 25 25 C 1.35148 * 108.60662 * 359.97438 * 24 23 22 26 26 N 1.36809 * 107.18107 * 359.97438 * 25 24 23 27 27 C 1.35509 * 119.91711 * 213.03457 * 18 17 15 28 28 H 1.09002 * 109.46688 * 299.99779 * 1 2 3 29 29 H 1.09001 * 109.47392 * 59.99485 * 1 2 3 30 30 H 1.09002 * 109.47327 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46955 * 60.00196 * 3 2 1 32 32 H 1.08999 * 109.47486 * 300.00461 * 3 2 1 33 33 H 1.09007 * 109.47056 * 305.00593 * 4 3 2 34 34 H 1.08994 * 109.47333 * 185.00400 * 4 3 2 35 35 H 1.09001 * 109.46457 * 29.99742 * 6 5 4 36 36 H 1.08996 * 109.46943 * 149.99752 * 6 5 4 37 37 H 0.97003 * 119.99843 * 180.02562 * 10 9 7 38 38 H 0.96998 * 120.00147 * 5.29759 * 17 15 5 39 39 H 1.08003 * 120.16649 * 0.02562 * 19 18 17 40 40 H 1.09001 * 109.46715 * 270.02165 * 21 20 19 41 41 H 1.09001 * 109.47053 * 30.01573 * 21 20 19 42 42 H 1.08994 * 109.47868 * 150.02325 * 21 20 19 43 43 H 1.07993 * 125.69224 * 180.02562 * 24 23 22 44 44 H 1.07994 * 126.40688 * 180.25952 * 25 24 23 45 45 H 1.07999 * 119.74570 * 0.02562 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.1052 -0.8921 -1.3429 7 6 5.5010 -1.2979 -0.9450 8 1 6.2197 -0.5460 -0.6546 9 6 5.8606 -2.6289 -0.9529 10 7 4.9854 -3.5444 -1.3071 11 14 7.5908 -3.1318 -0.4605 12 1 7.6355 -3.3847 1.0022 13 1 7.9730 -4.3683 -1.1885 14 1 8.5395 -2.0421 -0.8036 15 6 4.2615 1.3338 -2.3218 16 8 4.6264 0.8190 -3.3612 17 7 4.1419 2.6737 -2.2391 18 6 4.3313 3.4668 -3.3811 19 6 3.9621 2.9738 -4.6485 20 6 4.1474 3.7468 -5.7512 21 6 3.7582 3.2332 -7.1134 22 6 4.7078 5.0323 -5.6098 23 7 4.9951 5.9814 -6.4910 24 6 5.5185 7.0292 -5.8509 25 6 5.5677 6.7471 -4.5301 26 7 5.0572 5.4885 -4.3664 27 6 4.8687 4.7051 -3.2624 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8515 0.5681 0.8409 34 1 3.9785 2.1764 0.0890 35 1 3.3852 -1.3629 -0.6735 36 1 3.9119 -1.2114 -2.3670 37 1 5.2383 -4.4808 -1.3123 38 1 3.9249 3.0898 -1.3901 39 1 3.5333 1.9870 -4.7432 40 1 4.6050 2.7130 -7.5611 41 1 2.9190 2.5444 -7.0158 42 1 3.4691 4.0705 -7.7485 43 1 5.8469 7.9491 -6.3115 44 1 5.9364 7.3959 -3.7494 45 1 5.1496 5.0762 -2.2879 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590841516.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:27 Heat of formation + Delta-G solvation = 9.587752 kcal Electronic energy + Delta-G solvation = -28656.527879 eV Core-core repulsion = 24675.520042 eV Total energy + Delta-G solvation = -3981.007837 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.75127 -41.58704 -39.08333 -38.44978 -36.57315 -35.92129 -35.27780 -34.59377 -31.16459 -30.81251 -30.03112 -28.75702 -28.10008 -27.10741 -25.18970 -24.13934 -23.99070 -23.18716 -22.16425 -21.11763 -19.54492 -18.60603 -18.57074 -18.24090 -17.35981 -17.24374 -17.02542 -16.79363 -16.62919 -16.27918 -15.87832 -15.60837 -15.43065 -14.95096 -14.85960 -14.57430 -14.35125 -14.23276 -14.10282 -13.62479 -13.48049 -13.16898 -13.06311 -12.94238 -12.82502 -12.78059 -12.71577 -12.52679 -12.17148 -11.98211 -11.80709 -11.66452 -11.19180 -11.10056 -10.84645 -10.59824 -10.53019 -9.57744 -9.22929 -8.65738 -8.16633 -6.30871 -0.27098 0.26198 1.28245 1.37885 1.40957 1.50746 1.86463 1.96739 2.18405 2.40988 2.55150 2.90968 2.95145 3.13591 3.28716 3.51504 3.74800 3.94974 4.02787 4.13573 4.25424 4.31787 4.38065 4.45404 4.53671 4.53845 4.58841 4.61786 4.71336 4.75199 4.87332 4.90898 4.95711 5.05646 5.11871 5.19465 5.30188 5.34080 5.56691 5.58012 5.75278 5.81471 6.03012 6.10739 6.12136 6.35860 6.78668 6.91539 7.01816 7.34707 7.58737 8.89910 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011173 B = 0.003426 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.517430 B = 8170.754859 C = 9410.247872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.415 6.415 3 C 0.043 3.957 4 C 0.103 3.897 5 N -0.601 5.601 6 C 0.289 3.711 7 C -0.542 4.542 8 H 0.053 0.947 9 C 0.008 3.992 10 N -0.927 5.927 11 Si 0.964 3.036 12 H -0.264 1.264 13 H -0.283 1.283 14 H -0.274 1.274 15 C 0.697 3.303 16 O -0.615 6.615 17 N -0.665 5.665 18 C 0.161 3.839 19 C -0.115 4.115 20 C -0.045 4.045 21 C -0.098 4.098 22 C 0.185 3.815 23 N -0.520 5.520 24 C 0.009 3.991 25 C -0.087 4.087 26 N -0.349 5.349 27 C 0.005 3.995 28 H 0.063 0.937 29 H 0.041 0.959 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.049 0.951 33 H 0.085 0.915 34 H 0.121 0.879 35 H 0.034 0.966 36 H -0.008 1.008 37 H 0.265 0.735 38 H 0.423 0.577 39 H 0.131 0.869 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.210 0.790 44 H 0.223 0.777 45 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.955 21.976 2.484 22.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.334 6.334 3 C -0.034 4.034 4 C -0.020 4.020 5 N -0.334 5.334 6 C 0.167 3.833 7 C -0.581 4.581 8 H 0.072 0.928 9 C -0.191 4.191 10 N -0.567 5.567 11 Si 0.789 3.211 12 H -0.188 1.188 13 H -0.209 1.209 14 H -0.199 1.199 15 C 0.399 3.601 16 O -0.494 6.494 17 N -0.318 5.318 18 C 0.062 3.938 19 C -0.140 4.140 20 C -0.048 4.048 21 C -0.155 4.155 22 C -0.058 4.058 23 N -0.241 5.241 24 C -0.143 4.143 25 C -0.218 4.218 26 N -0.020 5.020 27 C -0.121 4.121 28 H 0.081 0.919 29 H 0.060 0.940 30 H 0.099 0.901 31 H 0.113 0.887 32 H 0.068 0.932 33 H 0.103 0.897 34 H 0.139 0.861 35 H 0.052 0.948 36 H 0.010 0.990 37 H 0.074 0.926 38 H 0.264 0.736 39 H 0.149 0.851 40 H 0.093 0.907 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.226 0.774 44 H 0.240 0.760 45 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -5.763 21.132 1.021 21.927 hybrid contribution 0.598 -0.568 1.248 1.496 sum -5.165 20.564 2.269 21.323 Atomic orbital electron populations 1.22841 0.80096 1.03067 1.00717 1.88044 1.21040 1.28825 1.95508 1.23204 0.93418 0.84992 1.01783 1.21888 0.93231 1.00019 0.86854 1.47346 1.67463 1.07717 1.10845 1.18597 0.95423 0.73803 0.95465 1.21772 0.98380 0.92521 1.45380 0.92846 1.25803 1.01549 0.96486 0.95230 1.70067 1.36440 1.01382 1.48805 0.85468 0.79377 0.77474 0.78762 1.18849 1.20904 1.19923 1.16025 0.78667 0.81186 0.84254 1.90898 1.54268 1.73251 1.30965 1.42366 1.74362 1.03884 1.11142 1.16697 0.99139 0.90639 0.87298 1.21028 1.01605 1.00327 0.91076 1.19033 0.98517 0.89428 0.97837 1.20636 1.02118 1.01666 0.91065 1.20826 1.06424 0.97028 0.81550 1.70684 1.20451 1.01695 1.31295 1.23129 1.01350 0.98921 0.90867 1.23368 1.11282 0.86071 1.01120 1.42641 1.38856 1.13297 1.07178 1.21163 1.05895 0.92526 0.92494 0.91894 0.93995 0.90130 0.88690 0.93235 0.89668 0.86134 0.94846 0.98989 0.92587 0.73592 0.85075 0.90683 0.90092 0.90118 0.77370 0.76021 0.77787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 11.01 113.37 1.25 1.91 16 2 O -0.41 -13.22 9.53 -148.98 -1.42 -14.64 16 3 C 0.04 1.02 6.28 71.98 0.45 1.47 16 4 C 0.10 2.82 5.62 86.38 0.49 3.31 16 5 N -0.60 -24.33 2.42 -844.17 -2.04 -26.37 16 6 C 0.29 15.49 4.98 85.63 0.43 15.92 16 7 C -0.54 -31.07 9.39 25.60 0.24 -30.83 16 8 H 0.05 3.01 7.81 -2.91 -0.02 2.98 16 9 C 0.01 0.48 5.46 84.65 0.46 0.94 16 10 N -0.93 -56.61 13.29 21.45 0.28 -56.33 16 11 Si 0.96 45.20 29.54 68.60 2.03 47.22 16 12 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 13 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 14 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 15 C 0.70 27.99 8.03 179.05 1.44 29.43 16 16 O -0.61 -31.30 13.59 -4.02 -0.05 -31.36 16 17 N -0.66 -18.16 5.22 -317.75 -1.66 -19.82 16 18 C 0.16 4.48 6.24 37.80 0.24 4.71 16 19 C -0.12 -3.76 8.30 22.39 0.19 -3.58 16 20 C -0.05 -1.38 5.90 -19.74 -0.12 -1.49 16 21 C -0.10 -2.56 10.02 71.23 0.71 -1.85 16 22 C 0.19 5.49 7.51 134.11 1.01 6.50 16 23 N -0.52 -15.07 11.31 -194.35 -2.20 -17.27 16 24 C 0.01 0.19 11.83 83.73 0.99 1.18 16 25 C -0.09 -1.56 11.76 83.20 0.98 -0.58 16 26 N -0.35 -8.38 2.95 -351.54 -1.04 -9.42 16 27 C 0.00 0.10 10.84 83.31 0.90 1.00 16 28 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.08 2.60 8.07 -2.38 -0.02 2.58 16 34 H 0.12 2.08 6.29 -2.39 -0.02 2.06 16 35 H 0.03 1.88 7.11 -2.39 -0.02 1.87 16 36 H -0.01 -0.51 7.42 -2.39 -0.02 -0.52 16 37 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 38 H 0.42 7.53 6.50 -92.71 -0.60 6.92 16 39 H 0.13 4.95 6.44 -2.91 -0.02 4.93 16 40 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.08 1.92 8.08 -2.39 -0.02 1.90 16 42 H 0.08 1.98 8.10 -2.39 -0.02 1.96 16 43 H 0.21 2.67 8.06 -2.91 -0.02 2.65 16 44 H 0.22 1.82 8.06 -2.91 -0.02 1.80 16 45 H 0.21 2.45 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -84.89 379.50 3.96 -80.93 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: 0.41 Total: 19.00 kcal Atomic # 6 Polarization: 18.39 SS G_CDS: 9.65 Total: 28.05 kcal Atomic # 7 Polarization: -122.55 SS G_CDS: -6.65 Total: -129.20 kcal Atomic # 8 Polarization: -44.52 SS G_CDS: -1.47 Total: -46.00 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -84.89 3.96 -80.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590841516.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.516 kcal (2) G-P(sol) polarization free energy of solvation -84.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds