Wall clock time and date at job start Tue Mar 31 2020 16:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99834 * 2 1 4 4 H 1.48501 * 109.47020 * 269.99871 * 3 2 1 5 5 H 1.48501 * 109.47282 * 30.00106 * 3 2 1 6 6 H 1.48501 * 109.47205 * 150.00017 * 3 2 1 7 7 C 1.37872 * 119.99793 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00390 * 0.02562 * 7 2 1 9 9 C 1.50707 * 119.99848 * 179.97438 * 7 2 1 10 10 N 1.46897 * 109.47044 * 180.02562 * 9 7 2 11 11 C 1.46895 * 110.99726 * 170.00609 * 10 9 7 12 12 C 1.53244 * 109.33773 * 187.25324 * 11 10 9 13 13 N 1.47087 * 108.52098 * 306.16616 * 12 11 10 14 14 S 1.65599 * 120.88020 * 231.18600 * 13 12 11 15 15 O 1.42096 * 104.27911 * 333.93179 * 14 13 12 16 16 O 1.42102 * 104.27416 * 206.07216 * 14 13 12 17 17 C 1.81399 * 104.44756 * 90.00213 * 14 13 12 18 18 C 1.52999 * 109.47143 * 179.97438 * 17 14 13 19 19 C 1.53179 * 109.54252 * 65.17880 * 18 17 14 20 20 C 1.53280 * 109.06328 * 176.85306 * 19 18 17 21 21 O 1.42901 * 109.46155 * 302.44168 * 20 19 18 22 22 C 1.42903 * 114.09356 * 61.15994 * 21 20 19 23 23 C 1.53091 * 109.41633 * 298.84001 * 22 21 20 24 24 C 1.47074 * 118.23396 * 51.46067 * 13 12 11 25 25 C 1.46901 * 110.99938 * 294.30285 * 10 9 7 26 26 H 0.97007 * 120.00062 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46320 * 60.00291 * 9 7 2 28 28 H 1.08993 * 109.47093 * 300.00539 * 9 7 2 29 29 H 1.08992 * 109.49796 * 67.29350 * 11 10 9 30 30 H 1.09003 * 109.51464 * 307.22074 * 11 10 9 31 31 H 1.08994 * 109.62887 * 186.45917 * 12 11 10 32 32 H 1.08999 * 109.63163 * 65.87529 * 12 11 10 33 33 H 1.09006 * 109.47419 * 59.99982 * 17 14 13 34 34 H 1.08998 * 109.47182 * 299.99994 * 17 14 13 35 35 H 1.09002 * 109.54301 * 305.00057 * 18 17 14 36 36 H 1.09006 * 109.52033 * 296.84410 * 19 18 17 37 37 H 1.09002 * 109.52377 * 57.02479 * 19 18 17 38 38 H 1.09007 * 109.45633 * 182.44534 * 20 19 18 39 39 H 1.09003 * 109.46692 * 62.44798 * 20 19 18 40 40 H 1.09000 * 109.47917 * 178.85973 * 22 21 20 41 41 H 1.09000 * 109.49157 * 58.82974 * 22 21 20 42 42 H 1.09004 * 109.52607 * 297.70481 * 23 22 21 43 43 H 1.08999 * 109.57497 * 177.54830 * 23 22 21 44 44 H 1.08997 * 109.63258 * 68.24921 * 24 13 12 45 45 H 1.09001 * 109.62820 * 188.83352 * 24 13 12 46 46 H 1.08996 * 109.49774 * 292.70995 * 25 10 9 47 47 H 1.09005 * 109.49386 * 52.79243 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0012 -2.5790 0.0001 11 6 5.4499 -2.6252 -0.2385 12 6 5.8896 -4.0830 -0.4111 13 7 5.4264 -4.8518 0.7541 14 16 6.4712 -5.8098 1.6102 15 8 7.4803 -6.1544 0.6710 16 8 5.6390 -6.8053 2.1897 17 6 7.1416 -4.7154 2.8921 18 6 8.1321 -5.4938 3.7603 19 6 9.3404 -5.9070 2.9144 20 6 10.3607 -6.6166 3.8117 21 8 10.7381 -5.7485 4.8822 22 6 9.6555 -5.3671 5.7334 23 6 8.6082 -4.6072 4.9152 24 6 4.0093 -4.7519 1.1350 25 6 3.6450 -3.2632 1.2503 26 1 -0.4850 0.8401 -0.0004 27 1 3.8751 -0.6796 0.8895 28 1 3.8745 -0.6808 -0.8904 29 1 5.9727 -2.1858 0.6110 30 1 5.6882 -2.0640 -1.1421 31 1 6.9766 -4.1326 -0.4739 32 1 5.4484 -4.4934 -1.3194 33 1 6.3277 -4.3435 3.5145 34 1 7.6524 -3.8752 2.4218 35 1 7.6456 -6.3835 4.1603 36 1 9.0167 -6.5824 2.1224 37 1 9.7972 -5.0206 2.4742 38 1 11.2424 -6.8750 3.2251 39 1 9.9164 -7.5246 4.2193 40 1 10.0291 -4.7253 6.5313 41 1 9.2017 -6.2586 6.1663 42 1 9.0502 -3.6945 4.5154 43 1 7.7611 -4.3529 5.5522 44 1 3.3909 -5.2253 0.3724 45 1 3.8526 -5.2440 2.0949 46 1 4.1928 -2.8150 2.0791 47 1 2.5737 -3.1649 1.4263 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601536234.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:30 Heat of formation + Delta-G solvation = -110.789945 kcal Electronic energy + Delta-G solvation = -27953.792346 eV Core-core repulsion = 24070.715741 eV Total energy + Delta-G solvation = -3883.076606 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.80791 -38.53085 -37.28009 -36.10016 -35.40205 -34.55674 -32.36558 -31.51788 -30.88487 -29.16015 -28.44395 -25.27028 -24.04719 -23.75253 -23.48898 -21.49466 -20.66355 -20.12496 -18.76759 -17.79198 -16.89168 -16.72257 -16.55246 -16.41074 -16.12179 -15.26133 -15.04937 -14.80575 -14.62446 -14.42805 -14.37499 -14.09535 -13.77277 -13.54465 -13.36608 -13.01559 -12.62937 -12.62476 -12.48019 -12.24327 -12.22146 -11.95598 -11.71788 -11.63654 -11.56269 -11.47206 -11.19839 -10.98106 -10.88239 -10.83520 -10.67932 -10.54656 -10.24496 -9.98373 -9.89799 -9.40353 -8.92481 -8.64696 -7.51096 -6.12907 -4.11138 0.10723 2.51899 3.21905 3.29827 3.30274 3.47927 3.65680 3.89920 4.05000 4.19458 4.28910 4.34269 4.54641 4.56706 4.69473 4.76509 4.80433 4.89108 5.02434 5.08799 5.17840 5.24937 5.27673 5.29519 5.35397 5.39298 5.45079 5.48226 5.57398 5.61440 5.67972 5.69380 5.83983 5.88972 6.06228 6.17746 6.32298 6.38108 6.57885 6.76248 6.79317 6.87112 7.48441 7.76818 7.91069 8.55823 8.94982 9.48295 10.99942 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018689 B = 0.002961 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.820400 B = 9455.328150 C =10115.981021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.069 3.931 3 Si 0.875 3.125 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.513 4.513 8 H 0.082 0.918 9 C 0.162 3.838 10 N -0.524 5.524 11 C 0.037 3.963 12 C 0.129 3.871 13 N -0.998 5.998 14 S 2.607 3.393 15 O -0.955 6.955 16 O -0.956 6.956 17 C -0.629 4.629 18 C -0.078 4.078 19 C -0.181 4.181 20 C 0.062 3.938 21 O -0.382 6.382 22 C 0.058 3.942 23 C -0.144 4.144 24 C 0.124 3.876 25 C 0.049 3.951 26 H 0.264 0.736 27 H -0.012 1.012 28 H 0.026 0.974 29 H 0.025 0.975 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.054 0.946 40 H 0.097 0.903 41 H 0.053 0.947 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.085 0.915 46 H 0.024 0.976 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.163 -10.865 8.814 23.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.133 4.133 3 Si 0.703 3.297 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.194 1.194 7 C -0.551 4.551 8 H 0.100 0.900 9 C 0.036 3.964 10 N -0.249 5.249 11 C -0.094 4.094 12 C 0.003 3.997 13 N -0.837 5.837 14 S 2.701 3.299 15 O -0.945 6.945 16 O -0.946 6.946 17 C -0.758 4.758 18 C -0.098 4.098 19 C -0.219 4.219 20 C -0.015 4.015 21 O -0.301 6.301 22 C -0.019 4.019 23 C -0.182 4.182 24 C -0.001 4.001 25 C -0.081 4.081 26 H 0.074 0.926 27 H 0.006 0.994 28 H 0.044 0.956 29 H 0.043 0.957 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.152 0.848 34 H 0.151 0.849 35 H 0.103 0.897 36 H 0.110 0.890 37 H 0.103 0.897 38 H 0.118 0.882 39 H 0.072 0.928 40 H 0.115 0.885 41 H 0.071 0.929 42 H 0.096 0.904 43 H 0.098 0.902 44 H 0.101 0.899 45 H 0.104 0.896 46 H 0.042 0.958 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 19.125 -11.834 8.274 23.964 hybrid contribution 0.350 2.222 0.862 2.409 sum 19.475 -9.612 9.136 23.562 Atomic orbital electron populations 1.69891 1.06121 1.26929 1.50736 1.24899 0.94731 0.98855 0.94777 0.86869 0.80189 0.84064 0.78623 1.20101 1.21190 1.19414 1.21016 0.88610 0.94784 1.50679 0.89989 1.20187 0.97217 0.83808 0.95156 1.61801 1.09986 1.19060 1.34022 1.22481 0.90675 0.95444 1.00758 1.21559 0.98749 0.91155 0.88221 1.57723 1.20135 1.64767 1.41079 1.05129 0.73976 0.75399 0.75443 1.93567 1.59927 1.81838 1.59149 1.93591 1.66131 1.55048 1.79819 1.30799 1.10567 1.16536 1.17852 1.20921 0.94519 0.98417 0.95900 1.22749 0.96594 1.03345 0.99185 1.22606 0.98761 0.91905 0.88179 1.87945 1.33445 1.67300 1.41415 1.22627 0.88124 0.98596 0.92540 1.22215 0.99701 0.99309 0.96996 1.21782 0.79572 0.97688 1.01043 1.22487 1.03061 0.91983 0.90527 0.92579 0.99411 0.95622 0.95658 0.90006 0.89664 0.90050 0.84753 0.84890 0.89676 0.89020 0.89680 0.88199 0.92821 0.88508 0.92893 0.90408 0.90219 0.89947 0.89629 0.95816 0.87887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.68 13.96 55.43 0.77 -25.90 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 20.72 27.47 -169.99 -4.67 16.05 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 7 C -0.51 -13.84 8.96 -34.44 -0.31 -14.15 16 8 H 0.08 2.40 7.37 -52.49 -0.39 2.02 16 9 C 0.16 3.69 3.79 -4.97 -0.02 3.67 16 10 N -0.52 -10.03 4.62 -235.46 -1.09 -11.11 16 11 C 0.04 0.55 5.62 -3.70 -0.02 0.53 16 12 C 0.13 1.68 6.46 -3.60 -0.02 1.65 16 13 N -1.00 -13.21 3.25 -112.97 -0.37 -13.58 16 14 S 2.61 31.68 5.07 -107.50 -0.55 31.13 16 15 O -0.95 -13.13 14.62 -57.54 -0.84 -13.97 16 16 O -0.96 -14.18 16.78 -57.54 -0.97 -15.15 16 17 C -0.63 -5.67 5.63 37.16 0.21 -5.46 16 18 C -0.08 -0.68 2.27 -90.44 -0.20 -0.88 16 19 C -0.18 -1.62 5.03 -26.49 -0.13 -1.75 16 20 C 0.06 0.51 6.85 37.30 0.26 0.76 16 21 O -0.38 -3.64 10.77 -35.23 -0.38 -4.01 16 22 C 0.06 0.43 6.84 37.20 0.25 0.68 16 23 C -0.14 -1.09 5.42 -26.59 -0.14 -1.23 16 24 C 0.12 1.78 6.50 -3.36 -0.02 1.76 16 25 C 0.05 0.84 5.47 -3.46 -0.02 0.82 16 26 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 27 H -0.01 -0.27 7.18 -51.93 -0.37 -0.64 16 28 H 0.03 0.59 7.40 -51.93 -0.38 0.20 16 29 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 1.17 7.99 -51.93 -0.41 0.76 16 31 H 0.09 0.92 7.19 -51.93 -0.37 0.55 16 32 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.13 1.07 8.14 -51.92 -0.42 0.65 16 34 H 0.13 1.05 8.14 -51.92 -0.42 0.63 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.09 0.88 5.84 -51.93 -0.30 0.58 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.10 0.68 8.14 -51.92 -0.42 0.26 16 39 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 45 H 0.09 1.08 7.18 -51.93 -0.37 0.70 16 46 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.10 1.98 6.67 -51.93 -0.35 1.64 16 LS Contribution 370.72 15.07 5.59 5.59 Total: -1.00 -33.39 370.72 -10.81 -44.20 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -8.04 Total: -1.49 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: -0.27 Total: -11.75 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: -0.68 Total: -50.60 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -2.19 Total: -33.13 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.67 Total: 16.05 kcal Atomic # 16 Polarization: 31.68 SS G_CDS: -0.55 Total: 31.13 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.39 -10.81 -44.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601536234.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.592 kcal (2) G-P(sol) polarization free energy of solvation -33.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds