Wall clock time and date at job start Tue Mar 31 2020 16:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99834 * 2 1 4 4 H 1.48501 * 109.47020 * 269.99871 * 3 2 1 5 5 H 1.48501 * 109.47282 * 30.00106 * 3 2 1 6 6 H 1.48501 * 109.47205 * 150.00017 * 3 2 1 7 7 C 1.37872 * 119.99793 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00390 * 0.02562 * 7 2 1 9 9 C 1.50707 * 119.99848 * 179.97438 * 7 2 1 10 10 N 1.46897 * 109.47044 * 180.02562 * 9 7 2 11 11 C 1.46895 * 110.99726 * 170.00609 * 10 9 7 12 12 C 1.53244 * 109.33773 * 187.25324 * 11 10 9 13 13 N 1.47087 * 108.52098 * 306.16616 * 12 11 10 14 14 S 1.65599 * 120.88020 * 231.18600 * 13 12 11 15 15 O 1.42096 * 104.27911 * 333.93179 * 14 13 12 16 16 O 1.42102 * 104.27416 * 206.07216 * 14 13 12 17 17 C 1.81399 * 104.44756 * 90.00213 * 14 13 12 18 18 C 1.52999 * 109.47143 * 179.97438 * 17 14 13 19 19 C 1.53179 * 109.54252 * 65.17880 * 18 17 14 20 20 C 1.53280 * 109.06328 * 176.85306 * 19 18 17 21 21 O 1.42901 * 109.46155 * 302.44168 * 20 19 18 22 22 C 1.42903 * 114.09356 * 61.15994 * 21 20 19 23 23 C 1.53091 * 109.41633 * 298.84001 * 22 21 20 24 24 C 1.47074 * 118.23396 * 51.46067 * 13 12 11 25 25 C 1.46901 * 110.99938 * 294.30285 * 10 9 7 26 26 H 0.97007 * 120.00062 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46320 * 60.00291 * 9 7 2 28 28 H 1.08993 * 109.47093 * 300.00539 * 9 7 2 29 29 H 1.08992 * 109.49796 * 67.29350 * 11 10 9 30 30 H 1.09003 * 109.51464 * 307.22074 * 11 10 9 31 31 H 1.08994 * 109.62887 * 186.45917 * 12 11 10 32 32 H 1.08999 * 109.63163 * 65.87529 * 12 11 10 33 33 H 1.09006 * 109.47419 * 59.99982 * 17 14 13 34 34 H 1.08998 * 109.47182 * 299.99994 * 17 14 13 35 35 H 1.09002 * 109.54301 * 305.00057 * 18 17 14 36 36 H 1.09006 * 109.52033 * 296.84410 * 19 18 17 37 37 H 1.09002 * 109.52377 * 57.02479 * 19 18 17 38 38 H 1.09007 * 109.45633 * 182.44534 * 20 19 18 39 39 H 1.09003 * 109.46692 * 62.44798 * 20 19 18 40 40 H 1.09000 * 109.47917 * 178.85973 * 22 21 20 41 41 H 1.09000 * 109.49157 * 58.82974 * 22 21 20 42 42 H 1.09004 * 109.52607 * 297.70481 * 23 22 21 43 43 H 1.08999 * 109.57497 * 177.54830 * 23 22 21 44 44 H 1.08997 * 109.63258 * 68.24921 * 24 13 12 45 45 H 1.09001 * 109.62820 * 188.83352 * 24 13 12 46 46 H 1.08996 * 109.49774 * 292.70995 * 25 10 9 47 47 H 1.09005 * 109.49386 * 52.79243 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0012 -2.5790 0.0001 11 6 5.4499 -2.6252 -0.2385 12 6 5.8896 -4.0830 -0.4111 13 7 5.4264 -4.8518 0.7541 14 16 6.4712 -5.8098 1.6102 15 8 7.4803 -6.1544 0.6710 16 8 5.6390 -6.8053 2.1897 17 6 7.1416 -4.7154 2.8921 18 6 8.1321 -5.4938 3.7603 19 6 9.3404 -5.9070 2.9144 20 6 10.3607 -6.6166 3.8117 21 8 10.7381 -5.7485 4.8822 22 6 9.6555 -5.3671 5.7334 23 6 8.6082 -4.6072 4.9152 24 6 4.0093 -4.7519 1.1350 25 6 3.6450 -3.2632 1.2503 26 1 -0.4850 0.8401 -0.0004 27 1 3.8751 -0.6796 0.8895 28 1 3.8745 -0.6808 -0.8904 29 1 5.9727 -2.1858 0.6110 30 1 5.6882 -2.0640 -1.1421 31 1 6.9766 -4.1326 -0.4739 32 1 5.4484 -4.4934 -1.3194 33 1 6.3277 -4.3435 3.5145 34 1 7.6524 -3.8752 2.4218 35 1 7.6456 -6.3835 4.1603 36 1 9.0167 -6.5824 2.1224 37 1 9.7972 -5.0206 2.4742 38 1 11.2424 -6.8750 3.2251 39 1 9.9164 -7.5246 4.2193 40 1 10.0291 -4.7253 6.5313 41 1 9.2017 -6.2586 6.1663 42 1 9.0502 -3.6945 4.5154 43 1 7.7611 -4.3529 5.5522 44 1 3.3909 -5.2253 0.3724 45 1 3.8526 -5.2440 2.0949 46 1 4.1928 -2.8150 2.0791 47 1 2.5737 -3.1649 1.4263 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601536234.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:29 Heat of formation + Delta-G solvation = -136.450173 kcal Electronic energy + Delta-G solvation = -27954.905057 eV Core-core repulsion = 24070.715741 eV Total energy + Delta-G solvation = -3884.189317 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.41943 -39.81481 -38.31096 -37.12268 -36.12666 -35.96632 -34.31773 -32.09312 -32.07969 -30.18612 -29.83888 -26.77669 -24.72315 -24.63772 -24.42659 -23.18021 -21.55626 -21.11049 -19.82209 -18.97892 -18.74751 -17.60032 -17.36545 -17.10049 -16.91744 -16.53563 -16.05325 -15.90699 -15.82768 -15.71454 -15.42495 -15.19622 -14.96619 -14.70607 -14.49362 -14.07234 -13.76592 -13.72220 -13.55797 -13.29833 -13.22007 -13.11746 -12.91053 -12.66943 -12.51201 -12.40223 -12.29021 -12.24582 -12.19604 -12.17798 -11.83493 -11.67724 -11.44262 -11.39530 -11.16751 -10.76226 -10.55932 -10.05672 -8.97490 -8.26154 -6.29552 -0.83017 1.37212 1.37696 1.47870 1.53297 2.35830 2.75058 2.94021 3.03696 3.07131 3.19639 3.31060 3.49709 3.62030 3.68272 3.98015 4.05820 4.11788 4.21845 4.25296 4.30077 4.34312 4.34542 4.40843 4.47660 4.52644 4.63572 4.74357 4.75025 4.77077 4.82546 4.84508 4.91869 5.02018 5.03937 5.05475 5.06369 5.13272 5.19097 5.23796 5.51244 5.55953 6.00747 6.22088 6.37438 6.67478 6.77906 7.34344 8.90254 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018689 B = 0.002961 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.820400 B = 9455.328150 C =10115.981021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.007 3.993 3 Si 0.947 3.053 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.248 1.248 7 C -0.515 4.515 8 H 0.040 0.960 9 C 0.172 3.828 10 N -0.545 5.545 11 C 0.035 3.965 12 C 0.130 3.870 13 N -1.002 6.002 14 S 2.610 3.390 15 O -0.973 6.973 16 O -0.987 6.987 17 C -0.608 4.608 18 C -0.085 4.085 19 C -0.184 4.184 20 C 0.058 3.942 21 O -0.401 6.401 22 C 0.051 3.949 23 C -0.140 4.140 24 C 0.132 3.868 25 C 0.052 3.948 26 H 0.266 0.734 27 H -0.009 1.009 28 H 0.031 0.969 29 H 0.043 0.957 30 H 0.090 0.910 31 H 0.113 0.887 32 H 0.073 0.927 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.109 0.891 39 H 0.061 0.939 40 H 0.110 0.890 41 H 0.061 0.939 42 H 0.077 0.923 43 H 0.093 0.907 44 H 0.069 0.931 45 H 0.104 0.896 46 H 0.039 0.961 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.007 -9.923 9.894 26.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.190 4.190 3 Si 0.771 3.229 4 H -0.192 1.192 5 H -0.212 1.212 6 H -0.172 1.172 7 C -0.554 4.554 8 H 0.058 0.942 9 C 0.045 3.955 10 N -0.270 5.270 11 C -0.094 4.094 12 C 0.004 3.996 13 N -0.840 5.840 14 S 2.708 3.292 15 O -0.964 6.964 16 O -0.978 6.978 17 C -0.740 4.740 18 C -0.105 4.105 19 C -0.222 4.222 20 C -0.019 4.019 21 O -0.320 6.320 22 C -0.025 4.025 23 C -0.179 4.179 24 C 0.007 3.993 25 C -0.078 4.078 26 H 0.075 0.925 27 H 0.009 0.991 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.108 0.892 31 H 0.131 0.869 32 H 0.091 0.909 33 H 0.170 0.830 34 H 0.170 0.830 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.127 0.873 39 H 0.079 0.921 40 H 0.128 0.872 41 H 0.079 0.921 42 H 0.096 0.904 43 H 0.112 0.888 44 H 0.087 0.913 45 H 0.122 0.878 46 H 0.058 0.942 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 21.979 -10.941 9.318 26.261 hybrid contribution -0.522 1.816 0.562 1.972 sum 21.457 -9.125 9.880 25.324 Atomic orbital electron populations 1.70058 1.08198 1.28035 1.52711 1.25843 0.95540 1.03134 0.94494 0.85719 0.79378 0.78677 0.79133 1.19230 1.21153 1.17186 1.21289 0.91206 0.93229 1.49645 0.94192 1.19935 0.94124 0.86205 0.95225 1.61669 1.13085 1.16957 1.35292 1.22601 0.87924 0.97046 1.01842 1.21597 1.00266 0.89784 0.87920 1.57700 1.19697 1.64797 1.41759 1.04949 0.73271 0.75339 0.75625 1.93542 1.59889 1.82460 1.60488 1.93550 1.67124 1.56938 1.80191 1.30609 1.11196 1.15795 1.16412 1.21046 0.94289 0.98895 0.96276 1.22767 0.96989 1.03291 0.99144 1.22705 0.99099 0.91968 0.88085 1.87922 1.34599 1.67591 1.41852 1.22808 0.87837 0.99281 0.92603 1.22215 1.00195 0.98893 0.96616 1.21599 0.80374 0.95683 1.01681 1.22413 1.01280 0.93701 0.90393 0.92535 0.99129 0.95134 0.93866 0.89171 0.86901 0.90873 0.82997 0.82971 0.89384 0.90023 0.89561 0.87332 0.92059 0.87182 0.92093 0.90430 0.88824 0.91309 0.87797 0.94238 0.91249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.08 13.96 21.45 0.30 -57.78 16 2 C 0.01 0.40 5.47 84.65 0.46 0.86 16 3 Si 0.95 42.31 27.47 68.60 1.88 44.19 16 4 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.25 -10.16 6.54 99.48 0.65 -9.51 16 7 C -0.52 -28.48 8.96 25.60 0.23 -28.25 16 8 H 0.04 2.48 7.37 -2.91 -0.02 2.45 16 9 C 0.17 7.66 3.79 85.56 0.32 7.98 16 10 N -0.55 -20.42 4.62 -898.87 -4.15 -24.57 16 11 C 0.04 0.97 5.62 86.39 0.49 1.46 16 12 C 0.13 3.10 6.46 86.35 0.56 3.66 16 13 N -1.00 -24.80 3.25 -511.32 -1.66 -26.47 16 14 S 2.61 58.51 5.07 -56.49 -0.29 58.23 16 15 O -0.97 -25.15 14.62 -127.65 -1.87 -27.01 16 16 O -0.99 -28.24 16.78 -127.65 -2.14 -30.39 16 17 C -0.61 -8.92 5.63 71.98 0.40 -8.51 16 18 C -0.08 -1.24 2.27 -10.67 -0.02 -1.26 16 19 C -0.18 -2.91 5.03 30.75 0.15 -2.75 16 20 C 0.06 0.84 6.85 72.08 0.49 1.33 16 21 O -0.40 -6.77 10.77 -148.98 -1.60 -8.38 16 22 C 0.05 0.62 6.84 72.01 0.49 1.12 16 23 C -0.14 -1.67 5.42 30.68 0.17 -1.51 16 24 C 0.13 3.73 6.50 86.51 0.56 4.29 16 25 C 0.05 1.76 5.47 86.54 0.47 2.23 16 26 H 0.27 15.20 8.31 -92.70 -0.77 14.43 16 27 H -0.01 -0.39 7.18 -2.39 -0.02 -0.41 16 28 H 0.03 1.33 7.40 -2.39 -0.02 1.31 16 29 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.09 2.33 7.99 -2.39 -0.02 2.31 16 31 H 0.11 2.10 7.19 -2.39 -0.02 2.08 16 32 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.15 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.15 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.08 1.45 5.84 -2.38 -0.01 1.44 16 37 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.11 1.31 8.14 -2.38 -0.02 1.29 16 39 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 43 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.10 2.52 7.18 -2.39 -0.02 2.50 16 46 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.07 2.79 6.67 -2.38 -0.02 2.78 16 Total: -1.00 -73.43 370.72 -3.87 -77.30 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 0.88 Total: 14.24 kcal Atomic # 6 Polarization: -24.15 SS G_CDS: 4.78 Total: -19.36 kcal Atomic # 7 Polarization: -103.30 SS G_CDS: -5.52 Total: -108.82 kcal Atomic # 8 Polarization: -60.17 SS G_CDS: -5.61 Total: -65.78 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 1.88 Total: 44.19 kcal Atomic # 16 Polarization: 58.51 SS G_CDS: -0.29 Total: 58.23 kcal Total: -73.43 -3.87 -77.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601536234.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.151 kcal (2) G-P(sol) polarization free energy of solvation -73.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds