Wall clock time and date at job start Tue Mar 31 2020 16:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00320 * 2 1 4 4 H 1.48498 * 109.47231 * 270.00389 * 3 2 1 5 5 H 1.48502 * 109.47107 * 30.00552 * 3 2 1 6 6 H 1.48509 * 109.47046 * 150.00292 * 3 2 1 7 7 C 1.37884 * 120.00015 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00082 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99603 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.46984 * 185.02163 * 9 7 2 11 11 C 1.46895 * 111.00021 * 295.08047 * 10 9 7 12 12 C 1.53240 * 109.34087 * 187.25286 * 11 10 9 13 13 N 1.47078 * 108.52110 * 306.17407 * 12 11 10 14 14 S 1.65598 * 120.88056 * 231.18523 * 13 12 11 15 15 O 1.42101 * 104.27872 * 333.92832 * 14 13 12 16 16 O 1.42103 * 104.28010 * 206.07018 * 14 13 12 17 17 C 1.81401 * 104.45123 * 89.99805 * 14 13 12 18 18 C 1.52998 * 109.47133 * 180.02562 * 17 14 13 19 19 C 1.53002 * 109.46932 * 180.02562 * 18 17 14 20 20 H 1.09000 * 111.02290 * 50.77722 * 19 18 17 21 21 C 1.55306 * 111.12635 * 175.00063 * 19 18 17 22 22 C 1.54379 * 102.43695 * 152.15132 * 21 19 18 23 23 O 1.43232 * 107.59296 * 338.54295 * 22 21 19 24 24 C 1.43647 * 109.96709 * 358.28774 * 23 22 21 25 25 C 1.47078 * 118.24289 * 51.45385 * 13 12 11 26 26 C 1.46903 * 110.99963 * 59.38522 * 10 9 7 27 27 H 0.97008 * 119.99620 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47456 * 65.02025 * 9 7 2 29 29 H 1.08998 * 109.47299 * 305.02267 * 9 7 2 30 30 H 1.08998 * 109.49557 * 67.29619 * 11 10 9 31 31 H 1.09001 * 109.49417 * 307.21188 * 11 10 9 32 32 H 1.09000 * 109.63438 * 186.46145 * 12 11 10 33 33 H 1.09004 * 109.62629 * 65.88009 * 12 11 10 34 34 H 1.08998 * 109.47099 * 59.99945 * 17 14 13 35 35 H 1.08999 * 109.46840 * 300.00098 * 17 14 13 36 36 H 1.09001 * 109.47585 * 60.00322 * 18 17 14 37 37 H 1.08999 * 109.47282 * 299.99760 * 18 17 14 38 38 H 1.09000 * 110.84569 * 33.85906 * 21 19 18 39 39 H 1.09004 * 110.84949 * 270.44452 * 21 19 18 40 40 H 1.09008 * 109.82990 * 98.06023 * 22 21 19 41 41 H 1.09005 * 109.83204 * 219.02568 * 22 21 19 42 42 H 1.09004 * 110.30954 * 143.34405 * 24 23 22 43 43 H 1.09003 * 110.30919 * 265.50986 * 24 23 22 44 44 H 1.09006 * 109.62784 * 68.25026 * 25 13 12 45 45 H 1.08995 * 109.63319 * 188.83417 * 25 13 12 46 46 H 1.08996 * 109.48908 * 292.70529 * 26 10 9 47 47 H 1.09000 * 109.49314 * 52.78823 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2009 -3.6131 0.1201 11 6 3.0763 -3.6883 -1.0572 12 6 3.9245 -4.9621 -0.9784 13 7 4.6211 -4.9801 0.3168 14 16 6.2566 -5.2269 0.3989 15 8 6.5584 -5.9685 -0.7751 16 8 6.4627 -5.7833 1.6901 17 6 6.9711 -3.5624 0.3015 18 6 8.4967 -3.6576 0.3673 19 6 9.0992 -2.2536 0.2858 20 1 8.6322 -1.5851 1.0090 21 6 10.6402 -2.2940 0.4747 22 6 11.1051 -1.0540 -0.3187 23 8 10.0719 -0.7269 -1.2552 24 6 9.0003 -1.6783 -1.1555 25 6 3.8260 -4.7791 1.5377 26 6 2.9825 -3.5066 1.3594 27 1 -0.4850 0.8401 0.0004 28 1 0.6930 -2.5966 -0.9319 29 1 0.5588 -2.5191 0.8413 30 1 3.7303 -2.8167 -1.0804 31 1 2.4683 -3.7115 -1.9616 32 1 4.6552 -4.9662 -1.7872 33 1 3.2795 -5.8371 -1.0594 34 1 6.6079 -2.9618 1.1354 35 1 6.6767 -3.0951 -0.6382 36 1 8.8596 -4.2581 -0.4669 37 1 8.7914 -4.1251 1.3068 38 1 11.0594 -3.2061 0.0498 39 1 10.9045 -2.2019 1.5283 40 1 11.2653 -0.2180 0.3622 41 1 12.0287 -1.2807 -0.8514 42 1 8.0400 -1.1831 -1.2995 43 1 9.1307 -2.4734 -1.8897 44 1 3.1716 -5.6368 1.6938 45 1 4.4913 -4.6620 2.3930 46 1 3.6378 -2.6375 1.3025 47 1 2.3065 -3.3982 2.2075 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601536698.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:41 Heat of formation + Delta-G solvation = -115.763549 kcal Electronic energy + Delta-G solvation = -27951.093442 eV Core-core repulsion = 24067.801165 eV Total energy + Delta-G solvation = -3883.292277 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.75850 -38.39297 -37.17706 -35.98682 -35.16718 -34.49747 -32.29387 -31.25901 -30.70996 -28.88010 -27.74547 -25.10109 -24.53002 -23.27653 -22.47498 -22.04552 -20.98097 -19.95620 -18.67233 -17.66176 -17.15627 -16.59845 -16.32141 -16.22382 -15.92089 -15.34313 -14.92412 -14.62765 -14.43138 -14.19423 -14.11218 -13.94577 -13.82913 -13.57874 -13.17097 -12.86016 -12.49105 -12.36162 -12.32259 -12.13336 -11.88286 -11.80993 -11.80860 -11.71778 -11.22366 -11.15366 -11.12258 -11.03919 -10.97948 -10.76768 -10.70037 -10.45764 -10.28586 -9.93453 -9.80742 -9.71646 -8.82480 -8.52940 -7.30296 -6.12537 -4.22579 0.20633 2.61852 3.19337 3.27407 3.27980 3.53931 3.75506 3.97321 4.06700 4.27190 4.31074 4.48615 4.50015 4.68933 4.77470 4.81658 4.89597 4.92879 5.06952 5.17803 5.21757 5.30838 5.38144 5.43330 5.46840 5.51212 5.52387 5.55450 5.66055 5.75113 5.77814 5.85372 5.85868 6.08557 6.19089 6.45379 6.52684 6.63424 6.69521 6.73770 7.15917 7.41789 7.79379 7.91619 8.15678 8.17723 8.87374 9.44958 10.92415 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.009189 B = 0.004377 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3046.420082 B = 6395.177785 C = 8774.158011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.067 3.933 3 Si 0.887 3.113 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.553 4.553 8 H 0.055 0.945 9 C 0.187 3.813 10 N -0.538 5.538 11 C 0.048 3.952 12 C 0.125 3.875 13 N -0.996 5.996 14 S 2.609 3.391 15 O -0.958 6.958 16 O -0.958 6.958 17 C -0.637 4.637 18 C -0.098 4.098 19 C -0.116 4.116 20 H 0.094 0.906 21 C -0.155 4.155 22 C 0.050 3.950 23 O -0.384 6.384 24 C 0.051 3.949 25 C 0.124 3.876 26 C 0.050 3.950 27 H 0.263 0.737 28 H 0.029 0.971 29 H 0.036 0.964 30 H 0.040 0.960 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.136 0.864 35 H 0.134 0.866 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.089 0.911 43 H 0.065 0.935 44 H 0.075 0.925 45 H 0.083 0.917 46 H 0.042 0.958 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.610 -6.983 1.195 18.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.136 4.136 3 Si 0.715 3.285 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.592 4.592 8 H 0.074 0.926 9 C 0.062 3.938 10 N -0.262 5.262 11 C -0.082 4.082 12 C 0.000 4.000 13 N -0.834 5.834 14 S 2.703 3.297 15 O -0.948 6.948 16 O -0.948 6.948 17 C -0.766 4.766 18 C -0.137 4.137 19 C -0.136 4.136 20 H 0.113 0.887 21 C -0.193 4.193 22 C -0.026 4.026 23 O -0.303 6.303 24 C -0.026 4.026 25 C -0.001 4.001 26 C -0.080 4.080 27 H 0.073 0.927 28 H 0.047 0.953 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.154 0.846 35 H 0.152 0.848 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.108 0.892 43 H 0.083 0.917 44 H 0.094 0.906 45 H 0.101 0.899 46 H 0.061 0.939 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 17.591 -7.977 1.158 19.350 hybrid contribution 0.692 2.540 0.057 2.633 sum 18.283 -5.437 1.215 19.113 Atomic orbital electron populations 1.69934 1.06009 1.26944 1.49747 1.24951 0.94743 0.99105 0.94816 0.86682 0.79855 0.83753 0.78210 1.20589 1.21061 1.20065 1.21712 0.93182 0.92105 1.52176 0.92643 1.19775 0.90757 0.85288 0.97998 1.62395 1.16920 1.46524 1.00403 1.22276 0.95538 0.95087 0.95345 1.21651 0.95845 0.99863 0.82645 1.57660 1.23879 1.88406 1.13488 1.05021 0.73375 0.77168 0.74183 1.93578 1.83599 1.67795 1.49855 1.93577 1.84794 1.75493 1.40975 1.30785 1.06473 1.26928 1.12377 1.21208 0.90763 0.97844 1.03879 1.22937 0.95417 0.96785 0.98417 0.88726 1.23225 0.95100 0.99114 1.01879 1.23113 0.91353 0.96729 0.91426 1.88421 1.30221 1.51795 1.59911 1.23647 0.91231 0.92292 0.95393 1.21767 0.94303 0.99514 0.84515 1.22335 0.96334 0.94698 0.94631 0.92699 0.95311 0.94579 0.94191 0.90377 0.89896 0.90617 0.84587 0.84780 0.90022 0.89779 0.90147 0.89671 0.91250 0.91414 0.89245 0.91704 0.90618 0.89888 0.93944 0.90354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.11 13.29 55.43 0.74 -24.38 16 2 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 3 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.55 -14.17 7.75 -34.44 -0.27 -14.44 16 8 H 0.06 1.39 5.88 -52.49 -0.31 1.08 16 9 C 0.19 4.49 5.11 -4.98 -0.03 4.46 16 10 N -0.54 -10.46 4.83 -235.47 -1.14 -11.60 16 11 C 0.05 0.81 5.24 -3.70 -0.02 0.79 16 12 C 0.13 1.76 6.46 -3.60 -0.02 1.74 16 13 N -1.00 -13.74 3.25 -112.97 -0.37 -14.11 16 14 S 2.61 33.18 5.42 -107.50 -0.58 32.60 16 15 O -0.96 -14.33 16.79 -57.54 -0.97 -15.29 16 16 O -0.96 -14.37 16.78 -57.54 -0.97 -15.33 16 17 C -0.64 -6.28 6.09 37.16 0.23 -6.05 16 18 C -0.10 -0.86 4.75 -26.73 -0.13 -0.98 16 19 C -0.12 -1.01 3.07 -88.07 -0.27 -1.28 16 20 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 21 C -0.16 -1.13 6.48 -24.79 -0.16 -1.29 16 22 C 0.05 0.43 7.80 37.88 0.30 0.73 16 23 O -0.38 -4.54 11.36 -35.23 -0.40 -4.94 16 24 C 0.05 0.51 6.83 38.48 0.26 0.78 16 25 C 0.12 1.76 6.50 -3.36 -0.02 1.74 16 26 C 0.05 0.87 5.17 -3.46 -0.02 0.85 16 27 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.03 0.74 8.07 -51.93 -0.42 0.32 16 29 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.04 0.72 6.92 -51.93 -0.36 0.36 16 31 H 0.08 1.33 8.05 -51.93 -0.42 0.91 16 32 H 0.08 1.02 7.19 -51.93 -0.37 0.65 16 33 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.14 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.13 1.23 7.80 -51.92 -0.41 0.83 16 36 H 0.08 0.65 7.96 -51.93 -0.41 0.24 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.52 8.03 -51.93 -0.42 0.10 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.54 8.14 -51.92 -0.42 0.11 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.06 0.60 7.91 -51.93 -0.41 0.19 16 44 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.08 1.03 7.18 -51.93 -0.37 0.66 16 46 H 0.04 0.78 6.79 -51.93 -0.35 0.42 16 47 H 0.08 1.37 8.11 -51.93 -0.42 0.95 16 LS Contribution 378.92 15.07 5.71 5.71 Total: -1.00 -32.49 378.92 -11.27 -43.76 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -8.03 Total: -0.70 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: -0.25 Total: -11.27 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: -0.77 Total: -50.08 kcal Atomic # 8 Polarization: -33.24 SS G_CDS: -2.33 Total: -35.57 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 33.18 SS G_CDS: -0.58 Total: 32.60 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.49 -11.27 -43.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601536698.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.005 kcal (2) G-P(sol) polarization free energy of solvation -32.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds