Wall clock time and date at job start Tue Mar 31 2020 16:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00320 * 2 1 4 4 H 1.48498 * 109.47231 * 270.00389 * 3 2 1 5 5 H 1.48502 * 109.47107 * 30.00552 * 3 2 1 6 6 H 1.48509 * 109.47046 * 150.00292 * 3 2 1 7 7 C 1.37884 * 120.00015 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00082 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99603 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.46984 * 185.02163 * 9 7 2 11 11 C 1.46895 * 111.00021 * 295.08047 * 10 9 7 12 12 C 1.53240 * 109.34087 * 187.25286 * 11 10 9 13 13 N 1.47078 * 108.52110 * 306.17407 * 12 11 10 14 14 S 1.65598 * 120.88056 * 231.18523 * 13 12 11 15 15 O 1.42101 * 104.27872 * 333.92832 * 14 13 12 16 16 O 1.42103 * 104.28010 * 206.07018 * 14 13 12 17 17 C 1.81401 * 104.45123 * 89.99805 * 14 13 12 18 18 C 1.52998 * 109.47133 * 180.02562 * 17 14 13 19 19 C 1.53002 * 109.46932 * 180.02562 * 18 17 14 20 20 H 1.09000 * 111.02290 * 50.77722 * 19 18 17 21 21 C 1.55306 * 111.12635 * 175.00063 * 19 18 17 22 22 C 1.54379 * 102.43695 * 152.15132 * 21 19 18 23 23 O 1.43232 * 107.59296 * 338.54295 * 22 21 19 24 24 C 1.43647 * 109.96709 * 358.28774 * 23 22 21 25 25 C 1.47078 * 118.24289 * 51.45385 * 13 12 11 26 26 C 1.46903 * 110.99963 * 59.38522 * 10 9 7 27 27 H 0.97008 * 119.99620 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.47456 * 65.02025 * 9 7 2 29 29 H 1.08998 * 109.47299 * 305.02267 * 9 7 2 30 30 H 1.08998 * 109.49557 * 67.29619 * 11 10 9 31 31 H 1.09001 * 109.49417 * 307.21188 * 11 10 9 32 32 H 1.09000 * 109.63438 * 186.46145 * 12 11 10 33 33 H 1.09004 * 109.62629 * 65.88009 * 12 11 10 34 34 H 1.08998 * 109.47099 * 59.99945 * 17 14 13 35 35 H 1.08999 * 109.46840 * 300.00098 * 17 14 13 36 36 H 1.09001 * 109.47585 * 60.00322 * 18 17 14 37 37 H 1.08999 * 109.47282 * 299.99760 * 18 17 14 38 38 H 1.09000 * 110.84569 * 33.85906 * 21 19 18 39 39 H 1.09004 * 110.84949 * 270.44452 * 21 19 18 40 40 H 1.09008 * 109.82990 * 98.06023 * 22 21 19 41 41 H 1.09005 * 109.83204 * 219.02568 * 22 21 19 42 42 H 1.09004 * 110.30954 * 143.34405 * 24 23 22 43 43 H 1.09003 * 110.30919 * 265.50986 * 24 23 22 44 44 H 1.09006 * 109.62784 * 68.25026 * 25 13 12 45 45 H 1.08995 * 109.63319 * 188.83417 * 25 13 12 46 46 H 1.08996 * 109.48908 * 292.70529 * 26 10 9 47 47 H 1.09000 * 109.49314 * 52.78823 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2009 -3.6131 0.1201 11 6 3.0763 -3.6883 -1.0572 12 6 3.9245 -4.9621 -0.9784 13 7 4.6211 -4.9801 0.3168 14 16 6.2566 -5.2269 0.3989 15 8 6.5584 -5.9685 -0.7751 16 8 6.4627 -5.7833 1.6901 17 6 6.9711 -3.5624 0.3015 18 6 8.4967 -3.6576 0.3673 19 6 9.0992 -2.2536 0.2858 20 1 8.6322 -1.5851 1.0090 21 6 10.6402 -2.2940 0.4747 22 6 11.1051 -1.0540 -0.3187 23 8 10.0719 -0.7269 -1.2552 24 6 9.0003 -1.6783 -1.1555 25 6 3.8260 -4.7791 1.5377 26 6 2.9825 -3.5066 1.3594 27 1 -0.4850 0.8401 0.0004 28 1 0.6930 -2.5966 -0.9319 29 1 0.5588 -2.5191 0.8413 30 1 3.7303 -2.8167 -1.0804 31 1 2.4683 -3.7115 -1.9616 32 1 4.6552 -4.9662 -1.7872 33 1 3.2795 -5.8371 -1.0594 34 1 6.6079 -2.9618 1.1354 35 1 6.6767 -3.0951 -0.6382 36 1 8.8596 -4.2581 -0.4669 37 1 8.7914 -4.1251 1.3068 38 1 11.0594 -3.2061 0.0498 39 1 10.9045 -2.2019 1.5283 40 1 11.2653 -0.2180 0.3622 41 1 12.0287 -1.2807 -0.8514 42 1 8.0400 -1.1831 -1.2995 43 1 9.1307 -2.4734 -1.8897 44 1 3.1716 -5.6368 1.6938 45 1 4.4913 -4.6620 2.3930 46 1 3.6378 -2.6375 1.3025 47 1 2.3065 -3.3982 2.2075 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601536698.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:40 Heat of formation + Delta-G solvation = -139.973746 kcal Electronic energy + Delta-G solvation = -27952.143275 eV Core-core repulsion = 24067.801165 eV Total energy + Delta-G solvation = -3884.342110 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.45600 -39.77704 -38.26376 -37.07601 -36.06098 -35.88498 -34.17185 -31.98115 -31.93570 -29.59452 -29.45880 -26.76027 -25.32974 -24.57307 -23.76304 -23.06613 -21.72799 -21.23678 -19.82819 -18.84586 -18.27549 -17.87759 -17.41837 -17.22039 -16.76827 -16.69138 -16.15583 -15.91944 -15.56163 -15.50827 -15.43613 -15.07772 -14.74267 -14.51043 -14.29686 -13.90795 -13.75893 -13.58422 -13.26321 -13.22639 -13.16463 -13.07510 -12.89083 -12.84013 -12.53375 -12.50403 -12.44824 -12.26420 -12.11907 -11.88330 -11.77848 -11.75579 -11.64721 -11.63033 -11.25333 -10.59752 -10.53335 -10.00904 -8.96573 -8.13754 -6.33660 -0.78427 1.36528 1.38404 1.46609 1.57923 2.36770 2.76508 2.91671 3.09572 3.11463 3.28484 3.37693 3.54519 3.69164 3.83253 3.85233 3.93621 4.20258 4.22132 4.27772 4.34260 4.38309 4.46955 4.48009 4.55633 4.62103 4.66939 4.75666 4.81175 4.85057 4.86638 4.88993 4.90788 5.03044 5.15826 5.16993 5.24462 5.26037 5.27555 5.36690 5.57892 5.76574 6.00488 6.05497 6.27190 6.56525 6.88131 7.38379 8.87929 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.009189 B = 0.004377 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3046.420082 B = 6395.177785 C = 8774.158011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.014 3.986 3 Si 0.951 3.049 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.553 4.553 8 H 0.062 0.938 9 C 0.201 3.799 10 N -0.541 5.541 11 C 0.048 3.952 12 C 0.132 3.868 13 N -1.002 6.002 14 S 2.619 3.381 15 O -0.981 6.981 16 O -0.981 6.981 17 C -0.622 4.622 18 C -0.104 4.104 19 C -0.113 4.113 20 H 0.093 0.907 21 C -0.150 4.150 22 C 0.041 3.959 23 O -0.413 6.413 24 C 0.042 3.958 25 C 0.132 3.868 26 C 0.051 3.949 27 H 0.264 0.736 28 H 0.004 0.996 29 H 0.007 0.993 30 H 0.032 0.968 31 H 0.073 0.927 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.148 0.852 35 H 0.143 0.857 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.101 0.899 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.071 0.929 44 H 0.079 0.921 45 H 0.105 0.895 46 H 0.034 0.966 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.108 -7.048 1.603 21.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.185 4.185 3 Si 0.776 3.224 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.592 4.592 8 H 0.080 0.920 9 C 0.074 3.926 10 N -0.265 5.265 11 C -0.082 4.082 12 C 0.007 3.993 13 N -0.839 5.839 14 S 2.716 3.284 15 O -0.972 6.972 16 O -0.971 6.971 17 C -0.753 4.753 18 C -0.142 4.142 19 C -0.133 4.133 20 H 0.111 0.889 21 C -0.188 4.188 22 C -0.035 4.035 23 O -0.334 6.334 24 C -0.034 4.034 25 C 0.007 3.993 26 C -0.079 4.079 27 H 0.073 0.927 28 H 0.022 0.978 29 H 0.026 0.974 30 H 0.050 0.950 31 H 0.092 0.908 32 H 0.123 0.877 33 H 0.097 0.903 34 H 0.166 0.834 35 H 0.162 0.838 36 H 0.109 0.891 37 H 0.116 0.884 38 H 0.109 0.891 39 H 0.120 0.880 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.100 0.900 43 H 0.089 0.911 44 H 0.097 0.903 45 H 0.123 0.877 46 H 0.052 0.948 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 20.093 -8.096 1.570 21.720 hybrid contribution -0.048 2.558 -0.085 2.560 sum 20.045 -5.537 1.485 20.849 Atomic orbital electron populations 1.70061 1.07595 1.27746 1.51207 1.25756 0.95459 1.02607 0.94702 0.85670 0.78863 0.79582 0.78250 1.20244 1.21101 1.18911 1.21997 0.93531 0.92707 1.50931 0.92022 1.19418 0.91189 0.86630 0.95375 1.62302 1.17723 1.44176 1.02323 1.22328 0.95236 0.96535 0.94102 1.21583 0.96062 0.98066 0.83608 1.57676 1.24498 1.88647 1.13084 1.04665 0.72663 0.77913 0.73121 1.93546 1.83659 1.69474 1.50483 1.93546 1.84869 1.76899 1.41830 1.30635 1.07298 1.23889 1.13514 1.21341 0.89597 0.98179 1.05130 1.22890 0.96546 0.96446 0.97370 0.88866 1.23244 0.93816 0.98934 1.02784 1.23315 0.91068 0.97644 0.91433 1.88385 1.31241 1.52733 1.61007 1.23756 0.90691 0.92282 0.96652 1.21683 0.94444 0.97731 0.85473 1.22372 0.96093 0.96233 0.93223 0.92722 0.97833 0.97448 0.94954 0.90844 0.87733 0.90260 0.83422 0.83847 0.89133 0.88429 0.89061 0.88039 0.90767 0.90399 0.89990 0.91074 0.90264 0.87734 0.94816 0.91123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.37 13.29 21.45 0.28 -53.09 16 2 C 0.01 0.77 5.46 84.66 0.46 1.23 16 3 Si 0.95 41.98 29.54 68.60 2.03 44.01 16 4 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 7 C -0.55 -28.50 7.75 25.60 0.20 -28.30 16 8 H 0.06 3.05 5.88 -2.91 -0.02 3.03 16 9 C 0.20 9.90 5.11 85.56 0.44 10.33 16 10 N -0.54 -21.12 4.83 -898.89 -4.34 -25.46 16 11 C 0.05 1.60 5.24 86.38 0.45 2.06 16 12 C 0.13 3.50 6.46 86.35 0.56 4.06 16 13 N -1.00 -25.70 3.25 -511.33 -1.66 -27.36 16 14 S 2.62 60.57 5.42 -56.49 -0.31 60.26 16 15 O -0.98 -27.26 16.79 -127.65 -2.14 -29.40 16 16 O -0.98 -27.19 16.78 -127.65 -2.14 -29.33 16 17 C -0.62 -10.48 6.09 71.98 0.44 -10.04 16 18 C -0.10 -1.49 4.75 30.59 0.15 -1.34 16 19 C -0.11 -1.67 3.07 -9.14 -0.03 -1.69 16 20 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 21 C -0.15 -1.75 6.48 31.85 0.21 -1.54 16 22 C 0.04 0.62 7.80 72.45 0.56 1.19 16 23 O -0.41 -9.23 11.36 -148.98 -1.69 -10.92 16 24 C 0.04 0.79 6.83 72.84 0.50 1.28 16 25 C 0.13 3.52 6.50 86.50 0.56 4.08 16 26 C 0.05 1.72 5.17 86.54 0.45 2.17 16 27 H 0.26 14.43 8.31 -92.70 -0.77 13.66 16 28 H 0.00 0.19 8.07 -2.39 -0.02 0.17 16 29 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.03 1.13 6.92 -2.39 -0.02 1.11 16 31 H 0.07 2.49 8.05 -2.39 -0.02 2.48 16 32 H 0.10 2.34 7.19 -2.39 -0.02 2.32 16 33 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 34 H 0.15 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.14 2.23 7.80 -2.39 -0.02 2.21 16 36 H 0.09 1.16 7.96 -2.39 -0.02 1.14 16 37 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.09 0.87 8.03 -2.39 -0.02 0.85 16 39 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 41 H 0.08 0.98 8.14 -2.38 -0.02 0.97 16 42 H 0.08 1.58 8.14 -2.39 -0.02 1.57 16 43 H 0.07 1.19 7.91 -2.39 -0.02 1.17 16 44 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 45 H 0.10 2.36 7.18 -2.39 -0.02 2.34 16 46 H 0.03 1.20 6.79 -2.39 -0.02 1.18 16 47 H 0.07 2.47 8.11 -2.39 -0.02 2.45 16 Total: -1.00 -69.55 378.92 -4.10 -73.65 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 0.94 Total: 14.17 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: 4.94 Total: -16.52 kcal Atomic # 7 Polarization: -100.20 SS G_CDS: -5.72 Total: -105.92 kcal Atomic # 8 Polarization: -63.68 SS G_CDS: -5.98 Total: -69.66 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Atomic # 16 Polarization: 60.57 SS G_CDS: -0.31 Total: 60.26 kcal Total: -69.55 -4.10 -73.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601536698.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.324 kcal (2) G-P(sol) polarization free energy of solvation -69.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds