Wall clock time and date at job start Tue Mar 31 2020 16:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99809 * 2 1 4 4 H 1.48506 * 109.46905 * 269.99775 * 3 2 1 5 5 H 1.48492 * 109.47326 * 29.99768 * 3 2 1 6 6 H 1.48502 * 109.46792 * 150.00214 * 3 2 1 7 7 C 1.37880 * 119.99713 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99407 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00248 * 359.97438 * 7 2 1 10 10 N 1.46905 * 109.47117 * 180.02562 * 9 7 2 11 11 C 1.46900 * 110.99929 * 170.00198 * 10 9 7 12 12 C 1.53239 * 109.33852 * 187.25050 * 11 10 9 13 13 N 1.47086 * 108.52246 * 306.17303 * 12 11 10 14 14 S 1.65597 * 120.87671 * 231.18875 * 13 12 11 15 15 O 1.42103 * 104.27898 * 333.92383 * 14 13 12 16 16 O 1.42105 * 104.27552 * 206.06924 * 14 13 12 17 17 C 1.81396 * 104.45357 * 89.99629 * 14 13 12 18 18 C 1.52994 * 109.47547 * 179.97438 * 17 14 13 19 19 C 1.53000 * 109.47441 * 180.02562 * 18 17 14 20 20 H 1.09000 * 110.55935 * 307.67482 * 19 18 17 21 21 C 1.54510 * 110.51046 * 185.00153 * 19 18 17 22 22 C 1.54477 * 104.18108 * 241.28037 * 21 19 18 23 23 O 1.44642 * 104.69773 * 336.19290 * 22 21 19 24 24 C 1.44415 * 105.37338 * 40.34325 * 23 22 21 25 25 C 1.47076 * 118.23813 * 51.45332 * 13 12 11 26 26 C 1.46902 * 110.99647 * 294.30095 * 10 9 7 27 27 H 0.97000 * 120.00202 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47449 * 60.00351 * 9 7 2 29 29 H 1.09002 * 109.47100 * 299.99984 * 9 7 2 30 30 H 1.08996 * 109.49309 * 67.29023 * 11 10 9 31 31 H 1.09002 * 109.49248 * 307.21151 * 11 10 9 32 32 H 1.08991 * 109.63020 * 186.45626 * 12 11 10 33 33 H 1.09003 * 109.62722 * 65.87748 * 12 11 10 34 34 H 1.09007 * 109.47064 * 59.99766 * 17 14 13 35 35 H 1.09002 * 109.47045 * 300.00243 * 17 14 13 36 36 H 1.08997 * 109.47394 * 59.99551 * 18 17 14 37 37 H 1.09008 * 109.46912 * 300.00123 * 18 17 14 38 38 H 1.09002 * 110.51305 * 359.97438 * 21 19 18 39 39 H 1.08994 * 110.51141 * 122.56897 * 21 19 18 40 40 H 1.09006 * 110.37498 * 94.92285 * 22 21 19 41 41 H 1.09000 * 110.37254 * 217.25804 * 22 21 19 42 42 H 1.08998 * 110.37627 * 200.73568 * 24 23 22 43 43 H 1.09004 * 110.46797 * 78.44683 * 24 23 22 44 44 H 1.08997 * 109.62773 * 68.25357 * 25 13 12 45 45 H 1.09003 * 109.62778 * 188.83556 * 25 13 12 46 46 H 1.09006 * 109.49160 * 292.70642 * 26 10 9 47 47 H 1.09002 * 109.49179 * 52.75965 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 7 2.2057 -3.6157 0.0027 11 6 1.5212 -4.8933 0.2419 12 6 2.5637 -6.0029 0.4157 13 7 3.4616 -5.9869 -0.7492 14 16 3.7691 -7.3713 -1.6043 15 8 3.5626 -8.4169 -0.6644 16 8 5.0475 -7.1488 -2.1835 17 6 2.4865 -7.4057 -2.8866 18 6 2.6657 -8.6532 -3.7539 19 6 1.5842 -8.6819 -4.8359 20 1 0.5954 -8.5679 -4.3918 21 6 1.6652 -9.9940 -5.6476 22 6 1.9563 -9.5285 -7.0915 23 8 1.4625 -8.1700 -7.1456 24 6 1.8377 -7.5757 -5.8840 25 6 4.0838 -4.7100 -1.1308 26 6 2.9767 -3.6502 -1.2472 27 1 -0.4850 0.8400 -0.0004 28 1 0.6241 -2.5576 -0.8880 29 1 0.6247 -2.5563 0.8920 30 1 0.8796 -5.1269 -0.6077 31 1 0.9160 -4.8181 1.1454 32 1 2.0632 -6.9690 0.4790 33 1 3.1394 -5.8254 1.3241 34 1 2.5716 -6.5152 -3.5096 35 1 1.5033 -7.4276 -2.4166 36 1 2.5809 -9.5438 -3.1313 37 1 3.6489 -8.6308 -4.2240 38 1 2.4760 -10.6222 -5.2784 39 1 0.7172 -10.5299 -5.6029 40 1 3.0282 -9.5501 -7.2885 41 1 1.4255 -10.1565 -7.8070 42 1 1.2161 -6.7052 -5.6749 43 1 2.8911 -7.2956 -5.8929 44 1 4.8027 -4.4106 -0.3682 45 1 4.5886 -4.8210 -2.0905 46 1 2.3147 -3.9011 -2.0761 47 1 3.4267 -2.6733 -1.4240 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601536699.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:44 Heat of formation + Delta-G solvation = -113.776697 kcal Electronic energy + Delta-G solvation = -27539.999022 eV Core-core repulsion = 23656.792901 eV Total energy + Delta-G solvation = -3883.206121 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.85269 -38.41522 -37.23097 -36.03611 -35.20395 -34.44635 -32.36011 -31.24146 -30.80986 -28.84347 -27.88257 -25.19474 -24.57920 -23.37740 -22.87563 -21.80912 -20.80595 -20.09762 -18.71090 -17.67750 -17.02828 -16.51724 -16.36281 -16.26800 -15.98014 -15.70241 -14.88181 -14.82965 -14.49444 -14.34309 -14.15707 -13.86920 -13.74059 -13.50993 -13.21810 -13.09806 -12.53411 -12.36316 -12.27165 -12.17779 -12.05352 -11.96640 -11.81286 -11.68938 -11.30769 -11.25911 -11.10353 -11.00672 -10.86725 -10.80925 -10.77284 -10.63524 -10.34803 -10.14329 -9.89805 -9.34218 -8.85142 -8.50302 -7.35931 -6.09705 -4.11600 0.13976 2.55856 3.27610 3.34602 3.38559 3.56708 3.70352 3.97813 4.00252 4.24221 4.36209 4.44227 4.45941 4.57714 4.68828 4.73481 4.85228 4.89545 4.99684 5.12617 5.24169 5.25869 5.33029 5.34843 5.42073 5.43162 5.45817 5.47302 5.58299 5.59936 5.66008 5.75511 5.76065 5.99247 6.13842 6.26504 6.41023 6.41848 6.44642 6.69267 7.18479 7.22942 7.71425 7.98403 8.08834 8.44480 8.95967 9.53331 11.01057 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013647 B = 0.002976 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.284644 B = 9405.912814 C =10570.778698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.510 4.510 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.533 5.533 11 C 0.040 3.960 12 C 0.128 3.872 13 N -0.997 5.997 14 S 2.608 3.392 15 O -0.957 6.957 16 O -0.956 6.956 17 C -0.637 4.637 18 C -0.102 4.102 19 C -0.114 4.114 20 H 0.090 0.910 21 C -0.155 4.155 22 C 0.043 3.957 23 O -0.376 6.376 24 C 0.044 3.956 25 C 0.124 3.876 26 C 0.050 3.950 27 H 0.262 0.738 28 H -0.009 1.009 29 H 0.031 0.969 30 H 0.025 0.975 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.061 0.939 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.064 0.936 44 H 0.080 0.920 45 H 0.084 0.916 46 H 0.023 0.977 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.606 -19.571 -9.288 21.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.549 4.549 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.259 5.259 11 C -0.090 4.090 12 C 0.003 3.997 13 N -0.836 5.836 14 S 2.702 3.298 15 O -0.948 6.948 16 O -0.946 6.946 17 C -0.766 4.766 18 C -0.141 4.141 19 C -0.134 4.134 20 H 0.109 0.891 21 C -0.193 4.193 22 C -0.034 4.034 23 O -0.294 6.294 24 C -0.032 4.032 25 C -0.001 4.001 26 C -0.080 4.080 27 H 0.071 0.929 28 H 0.008 0.992 29 H 0.049 0.951 30 H 0.043 0.957 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.151 0.849 35 H 0.153 0.847 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.079 0.921 41 H 0.110 0.890 42 H 0.113 0.887 43 H 0.083 0.917 44 H 0.098 0.902 45 H 0.102 0.898 46 H 0.041 0.959 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.363 -19.870 -8.888 22.200 hybrid contribution -0.853 1.143 -0.754 1.613 sum 3.510 -18.727 -9.643 21.354 Atomic orbital electron populations 1.69952 1.06103 1.26891 1.50812 1.24993 0.94860 0.99381 0.95330 0.86497 0.79837 0.83028 0.78055 1.20725 1.21266 1.19712 1.21147 0.93522 0.89867 1.50328 0.91752 1.19729 0.89976 0.87237 0.96155 1.61990 1.27925 1.02536 1.33411 1.22425 0.94798 0.91053 1.00773 1.21577 0.91353 0.98732 0.88068 1.57706 1.60326 1.24451 1.41111 1.05067 0.76009 0.73370 0.75391 1.93580 1.86977 1.55302 1.58918 1.93586 1.36348 1.84854 1.79836 1.30789 1.20915 1.06916 1.17945 1.21383 1.00225 0.95495 0.96976 1.22514 0.99944 0.95206 0.95735 0.89141 1.23054 1.03283 0.97549 0.95388 1.23473 0.99271 0.83869 0.96813 1.89171 1.78923 1.25045 1.36303 1.23596 1.00746 0.96411 0.82488 1.21777 0.95620 0.81866 1.00807 1.22447 0.95112 0.99344 0.91109 0.92865 0.99165 0.95057 0.95720 0.90073 0.89809 0.90223 0.84877 0.84747 0.89846 0.90084 0.90061 0.90283 0.92109 0.89034 0.88698 0.91745 0.90194 0.89760 0.95861 0.88509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.89 13.29 55.43 0.74 -25.15 16 2 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 3 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.51 -13.63 8.41 -34.44 -0.29 -13.92 16 8 H 0.06 1.69 7.13 -52.48 -0.37 1.32 16 9 C 0.19 4.75 4.72 -4.98 -0.02 4.72 16 10 N -0.53 -10.52 4.62 -235.46 -1.09 -11.61 16 11 C 0.04 0.63 5.62 -3.70 -0.02 0.61 16 12 C 0.13 1.72 6.46 -3.60 -0.02 1.70 16 13 N -1.00 -13.28 3.25 -112.97 -0.37 -13.64 16 14 S 2.61 31.42 5.42 -107.50 -0.58 30.83 16 15 O -0.96 -13.74 16.79 -57.54 -0.97 -14.71 16 16 O -0.96 -13.93 16.78 -57.54 -0.97 -14.90 16 17 C -0.64 -5.50 6.06 37.15 0.23 -5.27 16 18 C -0.10 -0.79 4.44 -26.73 -0.12 -0.91 16 19 C -0.11 -0.87 3.11 -89.05 -0.28 -1.15 16 20 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 21 C -0.15 -1.01 6.73 -25.16 -0.17 -1.18 16 22 C 0.04 0.31 7.65 37.93 0.29 0.60 16 23 O -0.38 -3.97 11.65 -35.23 -0.41 -4.38 16 24 C 0.04 0.39 6.52 37.93 0.25 0.64 16 25 C 0.12 1.77 6.50 -3.37 -0.02 1.75 16 26 C 0.05 0.86 5.47 -3.46 -0.02 0.84 16 27 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 28 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 29 H 0.03 0.82 7.97 -51.93 -0.41 0.41 16 30 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 1.27 7.99 -51.93 -0.41 0.85 16 32 H 0.08 0.95 7.19 -51.93 -0.37 0.58 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.13 1.04 7.63 -51.92 -0.40 0.65 16 35 H 0.13 1.00 8.14 -51.92 -0.42 0.58 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.59 7.96 -51.92 -0.41 0.18 16 38 H 0.08 0.43 7.73 -51.93 -0.40 0.03 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.06 0.53 7.74 -51.93 -0.40 0.13 16 44 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.08 1.04 7.19 -51.93 -0.37 0.67 16 46 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.10 1.81 6.67 -51.93 -0.35 1.47 16 LS Contribution 381.00 15.07 5.74 5.74 Total: -1.00 -33.59 381.00 -11.34 -44.93 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -8.12 Total: -2.95 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: -0.30 Total: -10.13 kcal Atomic # 7 Polarization: -49.68 SS G_CDS: -0.72 Total: -50.40 kcal Atomic # 8 Polarization: -31.64 SS G_CDS: -2.34 Total: -33.99 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 31.42 SS G_CDS: -0.58 Total: 30.83 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.59 -11.34 -44.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601536699.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.850 kcal (2) G-P(sol) polarization free energy of solvation -33.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds