Wall clock time and date at job start Tue Mar 31 2020 16:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99809 * 2 1 4 4 H 1.48506 * 109.46905 * 269.99775 * 3 2 1 5 5 H 1.48492 * 109.47326 * 29.99768 * 3 2 1 6 6 H 1.48502 * 109.46792 * 150.00214 * 3 2 1 7 7 C 1.37880 * 119.99713 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99407 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00248 * 359.97438 * 7 2 1 10 10 N 1.46905 * 109.47117 * 180.02562 * 9 7 2 11 11 C 1.46900 * 110.99929 * 170.00198 * 10 9 7 12 12 C 1.53239 * 109.33852 * 187.25050 * 11 10 9 13 13 N 1.47086 * 108.52246 * 306.17303 * 12 11 10 14 14 S 1.65597 * 120.87671 * 231.18875 * 13 12 11 15 15 O 1.42103 * 104.27898 * 333.92383 * 14 13 12 16 16 O 1.42105 * 104.27552 * 206.06924 * 14 13 12 17 17 C 1.81396 * 104.45357 * 89.99629 * 14 13 12 18 18 C 1.52994 * 109.47547 * 179.97438 * 17 14 13 19 19 C 1.53000 * 109.47441 * 180.02562 * 18 17 14 20 20 H 1.09000 * 110.55935 * 307.67482 * 19 18 17 21 21 C 1.54510 * 110.51046 * 185.00153 * 19 18 17 22 22 C 1.54477 * 104.18108 * 241.28037 * 21 19 18 23 23 O 1.44642 * 104.69773 * 336.19290 * 22 21 19 24 24 C 1.44415 * 105.37338 * 40.34325 * 23 22 21 25 25 C 1.47076 * 118.23813 * 51.45332 * 13 12 11 26 26 C 1.46902 * 110.99647 * 294.30095 * 10 9 7 27 27 H 0.97000 * 120.00202 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47449 * 60.00351 * 9 7 2 29 29 H 1.09002 * 109.47100 * 299.99984 * 9 7 2 30 30 H 1.08996 * 109.49309 * 67.29023 * 11 10 9 31 31 H 1.09002 * 109.49248 * 307.21151 * 11 10 9 32 32 H 1.08991 * 109.63020 * 186.45626 * 12 11 10 33 33 H 1.09003 * 109.62722 * 65.87748 * 12 11 10 34 34 H 1.09007 * 109.47064 * 59.99766 * 17 14 13 35 35 H 1.09002 * 109.47045 * 300.00243 * 17 14 13 36 36 H 1.08997 * 109.47394 * 59.99551 * 18 17 14 37 37 H 1.09008 * 109.46912 * 300.00123 * 18 17 14 38 38 H 1.09002 * 110.51305 * 359.97438 * 21 19 18 39 39 H 1.08994 * 110.51141 * 122.56897 * 21 19 18 40 40 H 1.09006 * 110.37498 * 94.92285 * 22 21 19 41 41 H 1.09000 * 110.37254 * 217.25804 * 22 21 19 42 42 H 1.08998 * 110.37627 * 200.73568 * 24 23 22 43 43 H 1.09004 * 110.46797 * 78.44683 * 24 23 22 44 44 H 1.08997 * 109.62773 * 68.25357 * 25 13 12 45 45 H 1.09003 * 109.62778 * 188.83556 * 25 13 12 46 46 H 1.09006 * 109.49160 * 292.70642 * 26 10 9 47 47 H 1.09002 * 109.49179 * 52.75965 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 7 2.2057 -3.6157 0.0027 11 6 1.5212 -4.8933 0.2419 12 6 2.5637 -6.0029 0.4157 13 7 3.4616 -5.9869 -0.7492 14 16 3.7691 -7.3713 -1.6043 15 8 3.5626 -8.4169 -0.6644 16 8 5.0475 -7.1488 -2.1835 17 6 2.4865 -7.4057 -2.8866 18 6 2.6657 -8.6532 -3.7539 19 6 1.5842 -8.6819 -4.8359 20 1 0.5954 -8.5679 -4.3918 21 6 1.6652 -9.9940 -5.6476 22 6 1.9563 -9.5285 -7.0915 23 8 1.4625 -8.1700 -7.1456 24 6 1.8377 -7.5757 -5.8840 25 6 4.0838 -4.7100 -1.1308 26 6 2.9767 -3.6502 -1.2472 27 1 -0.4850 0.8400 -0.0004 28 1 0.6241 -2.5576 -0.8880 29 1 0.6247 -2.5563 0.8920 30 1 0.8796 -5.1269 -0.6077 31 1 0.9160 -4.8181 1.1454 32 1 2.0632 -6.9690 0.4790 33 1 3.1394 -5.8254 1.3241 34 1 2.5716 -6.5152 -3.5096 35 1 1.5033 -7.4276 -2.4166 36 1 2.5809 -9.5438 -3.1313 37 1 3.6489 -8.6308 -4.2240 38 1 2.4760 -10.6222 -5.2784 39 1 0.7172 -10.5299 -5.6029 40 1 3.0282 -9.5501 -7.2885 41 1 1.4255 -10.1565 -7.8070 42 1 1.2161 -6.7052 -5.6749 43 1 2.8911 -7.2956 -5.8929 44 1 4.8027 -4.4106 -0.3682 45 1 4.5886 -4.8210 -2.0905 46 1 2.3147 -3.9011 -2.0761 47 1 3.4267 -2.6733 -1.4240 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601536699.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:43 Heat of formation + Delta-G solvation = -139.021255 kcal Electronic energy + Delta-G solvation = -27541.093708 eV Core-core repulsion = 23656.792901 eV Total energy + Delta-G solvation = -3884.300807 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.46283 -39.75291 -38.27085 -37.07729 -36.00455 -35.84578 -34.25927 -32.05196 -31.84325 -29.63229 -29.46603 -26.78644 -25.29765 -24.65007 -23.63604 -23.37340 -21.54431 -21.20818 -19.77023 -18.73105 -18.46493 -17.74876 -17.35320 -17.07204 -16.73977 -16.59569 -16.44974 -15.93251 -15.66473 -15.63488 -15.29154 -15.24493 -14.88945 -14.44615 -14.08937 -13.83552 -13.72050 -13.65576 -13.48240 -13.26984 -13.18114 -13.01893 -12.86812 -12.65022 -12.57208 -12.53624 -12.27443 -12.26309 -12.21681 -12.03405 -11.85561 -11.68573 -11.53719 -11.36070 -11.17648 -10.78501 -10.60255 -10.02532 -8.95399 -8.19132 -6.28378 -0.79596 1.42886 1.44075 1.55168 1.56570 2.41610 2.79360 3.01424 3.08853 3.13986 3.29300 3.34643 3.59200 3.66998 3.85770 3.90307 3.92332 4.14417 4.20087 4.29395 4.35544 4.37023 4.38195 4.40190 4.51326 4.53907 4.67692 4.76740 4.81166 4.82416 4.85036 4.90651 4.91949 5.04768 5.08880 5.09867 5.13385 5.20387 5.26344 5.30303 5.55109 5.67303 5.82537 6.07609 6.35715 6.66387 6.88484 7.41635 8.91648 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013647 B = 0.002976 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.284644 B = 9405.912814 C =10570.778698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.965 3.035 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.065 0.935 9 C 0.210 3.790 10 N -0.545 5.545 11 C 0.038 3.962 12 C 0.133 3.867 13 N -1.003 6.003 14 S 2.616 3.384 15 O -0.981 6.981 16 O -0.983 6.983 17 C -0.618 4.618 18 C -0.108 4.108 19 C -0.111 4.111 20 H 0.094 0.906 21 C -0.153 4.153 22 C 0.035 3.965 23 O -0.405 6.405 24 C 0.036 3.964 25 C 0.133 3.867 26 C 0.050 3.950 27 H 0.263 0.737 28 H -0.035 1.035 29 H 0.005 0.995 30 H 0.034 0.966 31 H 0.079 0.921 32 H 0.110 0.890 33 H 0.075 0.925 34 H 0.145 0.855 35 H 0.153 0.847 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.067 0.933 41 H 0.102 0.898 42 H 0.092 0.908 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.106 0.894 46 H 0.030 0.970 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.259 -20.777 -10.011 23.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.195 4.195 3 Si 0.790 3.210 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.083 0.917 9 C 0.083 3.917 10 N -0.270 5.270 11 C -0.092 4.092 12 C 0.008 3.992 13 N -0.840 5.840 14 S 2.714 3.286 15 O -0.972 6.972 16 O -0.974 6.974 17 C -0.750 4.750 18 C -0.147 4.147 19 C -0.131 4.131 20 H 0.112 0.888 21 C -0.191 4.191 22 C -0.042 4.042 23 O -0.324 6.324 24 C -0.040 4.040 25 C 0.008 3.992 26 C -0.079 4.079 27 H 0.072 0.928 28 H -0.018 1.018 29 H 0.023 0.977 30 H 0.053 0.947 31 H 0.097 0.903 32 H 0.129 0.871 33 H 0.093 0.907 34 H 0.163 0.837 35 H 0.171 0.829 36 H 0.114 0.886 37 H 0.105 0.895 38 H 0.114 0.886 39 H 0.104 0.896 40 H 0.086 0.914 41 H 0.120 0.880 42 H 0.111 0.889 43 H 0.086 0.914 44 H 0.092 0.908 45 H 0.125 0.875 46 H 0.048 0.952 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.065 -21.097 -9.579 23.717 hybrid contribution -1.093 1.431 -0.592 1.896 sum 3.972 -19.666 -10.171 22.494 Atomic orbital electron populations 1.70075 1.07673 1.27807 1.51959 1.25861 0.95664 1.03039 0.94958 0.85439 0.78595 0.78559 0.78366 1.19840 1.21097 1.18973 1.21487 0.93712 0.91060 1.49718 0.91716 1.19352 0.90007 0.88733 0.93575 1.61877 1.27168 1.02950 1.34997 1.22524 0.95659 0.89949 1.01068 1.21540 0.90736 0.98826 0.88090 1.57702 1.60326 1.24251 1.41694 1.04767 0.76118 0.72300 0.75435 1.93548 1.87404 1.55777 1.60450 1.93549 1.38817 1.84951 1.80093 1.30604 1.19639 1.08231 1.16481 1.21521 1.00732 0.95368 0.97098 1.22481 0.99925 0.95337 0.95316 0.88798 1.23077 1.04296 0.97195 0.94484 1.23679 0.99841 0.82784 0.97857 1.89137 1.79433 1.26644 1.37199 1.23717 1.00911 0.96868 0.82541 1.21636 0.94292 0.81433 1.01887 1.22447 0.95663 0.99603 0.90225 0.92783 1.01778 0.97707 0.94731 0.90277 0.87147 0.90677 0.83683 0.82901 0.88624 0.89509 0.88627 0.89550 0.91443 0.87984 0.88924 0.91423 0.90791 0.87548 0.95186 0.90491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.85 13.29 21.45 0.28 -54.56 16 2 C 0.00 0.16 5.46 84.66 0.46 0.62 16 3 Si 0.97 43.19 29.54 68.60 2.03 45.22 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.29 -12.61 7.11 99.48 0.71 -11.91 16 6 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 7 C -0.52 -28.32 8.41 25.60 0.22 -28.10 16 8 H 0.06 3.43 7.13 -2.91 -0.02 3.41 16 9 C 0.21 10.56 4.72 85.55 0.40 10.97 16 10 N -0.54 -21.61 4.62 -898.86 -4.15 -25.76 16 11 C 0.04 1.18 5.62 86.38 0.49 1.66 16 12 C 0.13 3.38 6.46 86.35 0.56 3.93 16 13 N -1.00 -24.92 3.25 -511.33 -1.66 -26.58 16 14 S 2.62 57.34 5.42 -56.49 -0.31 57.03 16 15 O -0.98 -26.09 16.79 -127.65 -2.14 -28.23 16 16 O -0.98 -26.94 16.78 -127.65 -2.14 -29.08 16 17 C -0.62 -8.81 6.06 71.98 0.44 -8.37 16 18 C -0.11 -1.36 4.44 30.59 0.14 -1.23 16 19 C -0.11 -1.40 3.11 -9.78 -0.03 -1.43 16 20 H 0.09 1.13 8.14 -2.39 -0.02 1.12 16 21 C -0.15 -1.60 6.73 31.61 0.21 -1.39 16 22 C 0.03 0.45 7.65 72.48 0.55 1.00 16 23 O -0.40 -8.07 11.65 -148.98 -1.74 -9.81 16 24 C 0.04 0.58 6.52 72.48 0.47 1.05 16 25 C 0.13 3.62 6.50 86.50 0.56 4.18 16 26 C 0.05 1.72 5.47 86.54 0.47 2.19 16 27 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 28 H -0.04 -1.93 8.12 -2.39 -0.02 -1.95 16 29 H 0.00 0.26 7.97 -2.39 -0.02 0.25 16 30 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.08 2.47 7.99 -2.39 -0.02 2.45 16 32 H 0.11 2.23 7.19 -2.39 -0.02 2.21 16 33 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.14 1.83 7.63 -2.39 -0.02 1.81 16 35 H 0.15 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.09 1.02 7.96 -2.38 -0.02 1.00 16 38 H 0.10 0.73 7.73 -2.39 -0.02 0.71 16 39 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 41 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.07 1.01 7.74 -2.38 -0.02 0.99 16 44 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.11 2.43 7.19 -2.39 -0.02 2.41 16 46 H 0.03 0.98 8.14 -2.38 -0.02 0.96 16 47 H 0.08 2.91 6.67 -2.39 -0.02 2.90 16 Total: -1.00 -72.66 381.00 -3.96 -76.62 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: 0.93 Total: 10.05 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: 4.94 Total: -14.90 kcal Atomic # 7 Polarization: -101.38 SS G_CDS: -5.53 Total: -106.91 kcal Atomic # 8 Polarization: -61.09 SS G_CDS: -6.02 Total: -67.12 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 16 Polarization: 57.34 SS G_CDS: -0.31 Total: 57.03 kcal Total: -72.66 -3.96 -76.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601536699.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.403 kcal (2) G-P(sol) polarization free energy of solvation -72.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds