Wall clock time and date at job start Tue Mar 31 2020 16:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38286 * 119.53605 * 2 1 4 4 C 1.38480 * 119.24450 * 180.02562 * 3 2 1 5 5 C 1.39344 * 118.35543 * 0.02562 * 4 3 2 6 6 N 1.39753 * 120.49348 * 180.02562 * 5 4 3 7 7 C 1.34779 * 119.99819 * 325.29219 * 6 5 4 8 8 O 1.21372 * 120.00365 * 3.75729 * 7 6 5 9 9 C 1.49358 * 119.99599 * 183.75998 * 7 6 5 10 10 O 1.21357 * 120.00109 * 353.47691 * 9 7 6 11 11 N 1.34776 * 119.99717 * 173.47363 * 9 7 6 12 12 C 1.47074 * 120.87841 * 171.54904 * 11 9 7 13 13 C 1.53695 * 108.27585 * 128.75883 * 12 11 9 14 14 N 1.46899 * 109.25898 * 54.08054 * 13 12 11 15 15 C 1.46899 * 111.00422 * 172.60887 * 14 13 12 16 16 C 1.50700 * 109.46997 * 294.30537 * 15 14 13 17 17 H 1.07997 * 120.00048 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99875 * 179.97438 * 16 15 14 19 19 N 1.31506 * 120.00052 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99870 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46780 * 60.00348 * 20 18 16 22 22 H 1.48499 * 109.47083 * 179.97438 * 20 18 16 23 23 H 1.48490 * 109.47319 * 300.00358 * 20 18 16 24 24 C 1.46900 * 111.27095 * 296.76143 * 14 13 12 25 25 C 1.47083 * 120.88135 * 351.83309 * 11 9 7 26 26 C 1.38901 * 119.01096 * 0.02562 * 5 4 3 27 27 N 1.31806 * 120.66135 * 359.97438 * 26 5 4 28 28 H 1.08998 * 109.47353 * 90.00035 * 1 2 3 29 29 H 1.09001 * 109.46631 * 209.99727 * 1 2 3 30 30 H 1.09001 * 109.47211 * 329.99525 * 1 2 3 31 31 H 1.07998 * 120.37368 * 0.27646 * 3 2 1 32 32 H 1.07999 * 120.82167 * 179.97438 * 4 3 2 33 33 H 0.96996 * 119.99928 * 145.28859 * 6 5 4 34 34 H 1.09000 * 109.63257 * 248.52374 * 12 11 9 35 35 H 1.09001 * 109.63432 * 9.10906 * 12 11 9 36 36 H 1.09000 * 109.64893 * 294.08154 * 13 12 11 37 37 H 1.09002 * 109.42233 * 173.94742 * 13 12 11 38 38 H 1.09001 * 109.47092 * 54.30072 * 15 14 13 39 39 H 1.09000 * 109.47625 * 174.30285 * 15 14 13 40 40 H 0.97005 * 120.00526 * 180.02562 * 19 18 16 41 41 H 1.08997 * 109.48975 * 303.13998 * 24 14 13 42 42 H 1.08999 * 109.49660 * 183.06500 * 24 14 13 43 43 H 1.08999 * 109.63100 * 350.88969 * 25 11 9 44 44 H 1.08999 * 109.62863 * 111.47532 * 25 11 9 45 45 H 1.08005 * 119.67124 * 179.97438 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.2032 0.0000 4 6 3.5735 1.1961 -0.0005 5 6 4.2291 -0.0335 -0.0016 6 7 5.6253 -0.0927 -0.0017 7 6 6.3393 0.8380 -0.6655 8 8 5.7732 1.7657 -1.2059 9 6 7.8271 0.7276 -0.7360 10 8 8.4029 -0.1301 -0.0992 11 7 8.5302 1.5806 -1.5071 12 6 9.9995 1.6125 -1.4514 13 6 10.5388 1.5008 -2.8863 14 7 9.9264 2.5464 -3.7168 15 6 10.5423 2.5880 -5.0498 16 6 11.9818 3.0162 -4.9248 17 1 12.3974 3.2358 -3.9525 18 6 12.7682 3.1275 -6.0519 19 7 12.2623 2.8596 -7.2358 20 14 14.5524 3.6590 -5.8971 21 1 15.2850 2.6902 -5.0427 22 1 15.1754 3.6998 -7.2445 23 1 14.6152 5.0086 -5.2810 24 6 8.4719 2.3657 -3.8144 25 6 7.8482 2.5086 -2.4220 26 6 3.4741 -1.1994 -0.0026 27 7 2.1570 -1.1473 -0.0021 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3632 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 1.6473 2.1376 0.0045 32 1 4.1316 2.1207 -0.0010 33 1 6.0806 -0.8036 0.4761 34 1 10.3289 2.5509 -1.0053 35 1 10.3618 0.7741 -0.8564 36 1 10.2925 0.5209 -3.2951 37 1 11.6211 1.6303 -2.8779 38 1 10.4959 1.5976 -5.5026 39 1 10.0047 3.2996 -5.6764 40 1 12.8156 2.9375 -8.0288 41 1 8.2544 1.3738 -4.2103 42 1 8.0551 3.1224 -4.4790 43 1 6.7873 2.2629 -2.4690 44 1 7.9746 3.5315 -2.0674 45 1 3.9712 -2.1583 -0.0039 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602078712.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:11 Heat of formation + Delta-G solvation = -0.616516 kcal Electronic energy + Delta-G solvation = -27887.550986 eV Core-core repulsion = 23906.100658 eV Total energy + Delta-G solvation = -3981.450328 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.59220 -40.41053 -38.93283 -37.72671 -35.97872 -34.40392 -32.69313 -32.43753 -32.09564 -30.86965 -28.67160 -27.80806 -25.91912 -24.69683 -24.04199 -23.31844 -22.38740 -21.72936 -20.75229 -19.68819 -18.23673 -17.65579 -16.89150 -16.75232 -16.46169 -16.38017 -15.97719 -15.36614 -14.85242 -14.79796 -14.57678 -14.37959 -14.31438 -14.22400 -13.78870 -13.60874 -13.51884 -12.99909 -12.88333 -12.62942 -12.53144 -12.34919 -12.06037 -11.53369 -11.33801 -11.28880 -11.05995 -10.87805 -10.80924 -10.67715 -10.60191 -10.08064 -10.02938 -9.89895 -9.43091 -9.19646 -8.73288 -8.63541 -8.48446 -7.37916 -6.08181 -4.10469 0.49175 0.89838 1.26395 1.99840 2.90990 3.20795 3.30120 3.34641 3.37043 3.40131 3.93648 4.03273 4.37160 4.38285 4.49436 4.61043 4.77218 4.86450 5.18542 5.20352 5.24421 5.24570 5.26746 5.34903 5.42857 5.52765 5.61107 5.67485 5.72125 5.75442 5.78677 5.82762 6.07303 6.20700 6.30810 6.35025 6.42839 6.50863 6.63589 7.15693 7.18432 7.25080 7.37556 7.58746 7.70817 7.74706 7.97501 8.08229 8.44106 8.96242 9.54098 11.02504 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.028558 B = 0.002137 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.233293 B =13096.502320 C =13611.191672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.110 3.890 3 C -0.151 4.151 4 C -0.072 4.072 5 C 0.084 3.916 6 N -0.641 5.641 7 C 0.513 3.487 8 O -0.491 6.491 9 C 0.506 3.494 10 O -0.529 6.529 11 N -0.568 5.568 12 C 0.111 3.889 13 C 0.051 3.949 14 N -0.537 5.537 15 C 0.194 3.806 16 C -0.511 4.511 17 H 0.064 0.936 18 C 0.056 3.944 19 N -0.897 5.897 20 Si 0.899 3.101 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.276 1.276 24 C 0.040 3.960 25 C 0.080 3.920 26 C 0.090 3.910 27 N -0.467 5.467 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.140 0.860 32 H 0.152 0.848 33 H 0.426 0.574 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.027 0.973 37 H 0.100 0.900 38 H -0.009 1.009 39 H 0.032 0.968 40 H 0.263 0.737 41 H 0.025 0.975 42 H 0.084 0.916 43 H 0.128 0.872 44 H 0.078 0.922 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.064 -5.083 16.252 26.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.028 4.028 3 C -0.172 4.172 4 C -0.100 4.100 5 C -0.012 4.012 6 N -0.288 5.288 7 C 0.296 3.704 8 O -0.365 6.365 9 C 0.287 3.713 10 O -0.407 6.407 11 N -0.300 5.300 12 C -0.011 4.011 13 C -0.078 4.078 14 N -0.262 5.262 15 C 0.069 3.931 16 C -0.550 4.550 17 H 0.082 0.918 18 C -0.146 4.146 19 N -0.537 5.537 20 Si 0.727 3.273 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.201 1.201 24 C -0.090 4.090 25 C -0.042 4.042 26 C -0.070 4.070 27 N -0.176 5.176 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.158 0.842 32 H 0.170 0.830 33 H 0.264 0.736 34 H 0.100 0.900 35 H 0.110 0.890 36 H 0.045 0.955 37 H 0.118 0.882 38 H 0.009 0.991 39 H 0.050 0.950 40 H 0.072 0.928 41 H 0.043 0.957 42 H 0.102 0.898 43 H 0.145 0.855 44 H 0.097 0.903 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -20.422 -5.181 16.185 26.568 hybrid contribution 1.719 0.032 -0.404 1.766 sum -18.703 -5.148 15.782 25.007 Atomic orbital electron populations 1.20698 0.88571 1.03482 1.03214 1.21341 0.97258 0.88280 0.95891 1.21927 0.94067 0.99498 1.01670 1.21784 0.94503 0.98017 0.95697 1.18813 0.83068 0.95625 1.03687 1.43080 1.04182 1.30641 1.50933 1.20589 0.89065 0.82349 0.78393 1.90567 1.71765 1.31240 1.42928 1.19612 0.86995 0.82829 0.81820 1.90759 1.70835 1.33845 1.45227 1.48164 1.08131 1.35542 1.38206 1.22200 0.76710 1.03197 0.98972 1.22417 1.01243 0.93171 0.90929 1.62121 1.01110 1.44965 1.18001 1.19727 0.94759 0.95819 0.82803 1.21094 0.94930 1.45581 0.93378 0.91832 1.24998 0.98845 0.95513 0.95220 1.69942 1.36634 1.49095 0.97982 0.86540 0.84424 0.79260 0.77057 1.20250 1.21360 1.20127 1.22448 0.91053 1.00007 0.95479 1.22951 0.99318 0.93398 0.88520 1.22628 0.89372 0.96972 0.98051 1.67525 1.08550 1.29267 1.12273 0.90324 0.90462 0.90636 0.84216 0.83032 0.73578 0.89994 0.88976 0.95520 0.88152 0.99083 0.94964 0.92788 0.95660 0.89764 0.85510 0.90320 0.82213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.58 10.17 36.01 0.37 -0.22 16 2 C 0.11 0.96 6.78 -82.56 -0.56 0.40 16 3 C -0.15 -1.24 9.73 -39.47 -0.38 -1.63 16 4 C -0.07 -0.70 8.81 -39.08 -0.34 -1.05 16 5 C 0.08 0.82 6.32 -83.59 -0.53 0.29 16 6 N -0.64 -6.15 5.34 -10.19 -0.05 -6.21 16 7 C 0.51 6.16 7.59 -11.63 -0.09 6.07 16 8 O -0.49 -6.38 10.69 5.48 0.06 -6.32 16 9 C 0.51 7.04 7.74 -11.63 -0.09 6.95 16 10 O -0.53 -8.04 15.96 5.49 0.09 -7.95 16 11 N -0.57 -8.42 3.00 -172.73 -0.52 -8.94 16 12 C 0.11 1.70 6.65 -3.37 -0.02 1.68 16 13 C 0.05 0.96 5.47 -3.46 -0.02 0.94 16 14 N -0.54 -11.07 4.62 -235.47 -1.09 -12.15 16 15 C 0.19 4.90 4.72 -4.98 -0.02 4.87 16 16 C -0.51 -13.89 8.41 -34.44 -0.29 -14.18 16 17 H 0.06 1.69 7.13 -52.49 -0.37 1.31 16 18 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 19 N -0.90 -26.23 13.29 55.43 0.74 -25.49 16 20 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 21 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 C 0.04 0.69 5.62 -3.70 -0.02 0.67 16 25 C 0.08 1.16 6.10 -3.60 -0.02 1.14 16 26 C 0.09 0.82 11.12 -17.32 -0.19 0.63 16 27 N -0.47 -4.73 10.26 -9.29 -0.10 -4.83 16 28 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 31 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 32 H 0.15 1.53 6.32 -52.49 -0.33 1.19 16 33 H 0.43 3.33 8.30 -40.82 -0.34 2.99 16 34 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.09 1.34 7.05 -51.93 -0.37 0.98 16 36 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.10 1.98 6.67 -51.93 -0.35 1.63 16 38 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 39 H 0.03 0.87 7.97 -51.93 -0.41 0.46 16 40 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 41 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.08 1.42 7.99 -51.93 -0.41 1.01 16 43 H 0.13 1.77 4.45 -54.17 -0.24 1.53 16 44 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.16 1.07 8.06 -52.48 -0.42 0.65 16 LS Contribution 370.05 15.07 5.58 5.58 Total: -1.00 -31.78 370.05 -8.82 -40.60 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -6.19 Total: 1.52 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: -2.32 Total: 8.02 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: -1.02 Total: -57.62 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: 0.15 Total: -14.27 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.78 -8.82 -40.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602078712.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.979 kcal (2) G-P(sol) polarization free energy of solvation -31.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds