Wall clock time and date at job start Tue Mar 31 2020 16:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38286 * 119.53605 * 2 1 4 4 C 1.38480 * 119.24450 * 180.02562 * 3 2 1 5 5 C 1.39344 * 118.35543 * 0.02562 * 4 3 2 6 6 N 1.39753 * 120.49348 * 180.02562 * 5 4 3 7 7 C 1.34779 * 119.99819 * 325.29219 * 6 5 4 8 8 O 1.21372 * 120.00365 * 3.75729 * 7 6 5 9 9 C 1.49358 * 119.99599 * 183.75998 * 7 6 5 10 10 O 1.21357 * 120.00109 * 353.47691 * 9 7 6 11 11 N 1.34776 * 119.99717 * 173.47363 * 9 7 6 12 12 C 1.47074 * 120.87841 * 171.54904 * 11 9 7 13 13 C 1.53695 * 108.27585 * 128.75883 * 12 11 9 14 14 N 1.46899 * 109.25898 * 54.08054 * 13 12 11 15 15 C 1.46899 * 111.00422 * 172.60887 * 14 13 12 16 16 C 1.50700 * 109.46997 * 294.30537 * 15 14 13 17 17 H 1.07997 * 120.00048 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99875 * 179.97438 * 16 15 14 19 19 N 1.31506 * 120.00052 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99870 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46780 * 60.00348 * 20 18 16 22 22 H 1.48499 * 109.47083 * 179.97438 * 20 18 16 23 23 H 1.48490 * 109.47319 * 300.00358 * 20 18 16 24 24 C 1.46900 * 111.27095 * 296.76143 * 14 13 12 25 25 C 1.47083 * 120.88135 * 351.83309 * 11 9 7 26 26 C 1.38901 * 119.01096 * 0.02562 * 5 4 3 27 27 N 1.31806 * 120.66135 * 359.97438 * 26 5 4 28 28 H 1.08998 * 109.47353 * 90.00035 * 1 2 3 29 29 H 1.09001 * 109.46631 * 209.99727 * 1 2 3 30 30 H 1.09001 * 109.47211 * 329.99525 * 1 2 3 31 31 H 1.07998 * 120.37368 * 0.27646 * 3 2 1 32 32 H 1.07999 * 120.82167 * 179.97438 * 4 3 2 33 33 H 0.96996 * 119.99928 * 145.28859 * 6 5 4 34 34 H 1.09000 * 109.63257 * 248.52374 * 12 11 9 35 35 H 1.09001 * 109.63432 * 9.10906 * 12 11 9 36 36 H 1.09000 * 109.64893 * 294.08154 * 13 12 11 37 37 H 1.09002 * 109.42233 * 173.94742 * 13 12 11 38 38 H 1.09001 * 109.47092 * 54.30072 * 15 14 13 39 39 H 1.09000 * 109.47625 * 174.30285 * 15 14 13 40 40 H 0.97005 * 120.00526 * 180.02562 * 19 18 16 41 41 H 1.08997 * 109.48975 * 303.13998 * 24 14 13 42 42 H 1.08999 * 109.49660 * 183.06500 * 24 14 13 43 43 H 1.08999 * 109.63100 * 350.88969 * 25 11 9 44 44 H 1.08999 * 109.62863 * 111.47532 * 25 11 9 45 45 H 1.08005 * 119.67124 * 179.97438 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.2032 0.0000 4 6 3.5735 1.1961 -0.0005 5 6 4.2291 -0.0335 -0.0016 6 7 5.6253 -0.0927 -0.0017 7 6 6.3393 0.8380 -0.6655 8 8 5.7732 1.7657 -1.2059 9 6 7.8271 0.7276 -0.7360 10 8 8.4029 -0.1301 -0.0992 11 7 8.5302 1.5806 -1.5071 12 6 9.9995 1.6125 -1.4514 13 6 10.5388 1.5008 -2.8863 14 7 9.9264 2.5464 -3.7168 15 6 10.5423 2.5880 -5.0498 16 6 11.9818 3.0162 -4.9248 17 1 12.3974 3.2358 -3.9525 18 6 12.7682 3.1275 -6.0519 19 7 12.2623 2.8596 -7.2358 20 14 14.5524 3.6590 -5.8971 21 1 15.2850 2.6902 -5.0427 22 1 15.1754 3.6998 -7.2445 23 1 14.6152 5.0086 -5.2810 24 6 8.4719 2.3657 -3.8144 25 6 7.8482 2.5086 -2.4220 26 6 3.4741 -1.1994 -0.0026 27 7 2.1570 -1.1473 -0.0021 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3632 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 1.6473 2.1376 0.0045 32 1 4.1316 2.1207 -0.0010 33 1 6.0806 -0.8036 0.4761 34 1 10.3289 2.5509 -1.0053 35 1 10.3618 0.7741 -0.8564 36 1 10.2925 0.5209 -3.2951 37 1 11.6211 1.6303 -2.8779 38 1 10.4959 1.5976 -5.5026 39 1 10.0047 3.2996 -5.6764 40 1 12.8156 2.9375 -8.0288 41 1 8.2544 1.3738 -4.2103 42 1 8.0551 3.1224 -4.4790 43 1 6.7873 2.2629 -2.4690 44 1 7.9746 3.5315 -2.0674 45 1 3.9712 -2.1583 -0.0039 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602078712.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:10 Heat of formation + Delta-G solvation = -23.325532 kcal Electronic energy + Delta-G solvation = -27888.535723 eV Core-core repulsion = 23906.100658 eV Total energy + Delta-G solvation = -3982.435064 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.51930 -41.29080 -39.98745 -39.07659 -36.94532 -35.84578 -34.39964 -33.34117 -32.77470 -32.22277 -30.28166 -28.62902 -27.47722 -25.91827 -24.74399 -24.57459 -23.81509 -22.96211 -21.87313 -20.88035 -19.27004 -18.64787 -18.41539 -17.92879 -17.54683 -17.33669 -16.95143 -16.67726 -16.30650 -16.10366 -15.64678 -15.61012 -15.47987 -15.19085 -15.17242 -14.87297 -14.37687 -14.21589 -14.07238 -13.66033 -13.45607 -13.17064 -13.09083 -12.99184 -12.80427 -12.78263 -12.56039 -12.38982 -12.28096 -12.22770 -11.92473 -11.76246 -11.38711 -10.80554 -10.75568 -10.61869 -10.23317 -9.99405 -9.37741 -9.10885 -8.20999 -6.31392 -0.30075 0.20521 0.35442 1.01333 1.42711 1.45501 1.53263 1.87901 2.18811 2.40532 2.71811 2.98779 3.11052 3.21255 3.40964 3.76503 3.82427 3.88803 3.97302 3.98210 4.13602 4.18518 4.27019 4.38249 4.49479 4.58209 4.69533 4.78297 4.79401 4.83965 4.89766 4.91173 4.98398 5.05850 5.06443 5.16553 5.18731 5.23455 5.30811 5.61911 5.66356 5.78201 6.00352 6.03609 6.23800 6.43792 6.53689 6.66458 6.83805 6.92453 7.38415 8.89931 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.028558 B = 0.002137 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.233293 B =13096.502320 C =13611.191672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.103 3.897 3 C -0.151 4.151 4 C -0.083 4.083 5 C 0.069 3.931 6 N -0.625 5.625 7 C 0.517 3.483 8 O -0.502 6.502 9 C 0.510 3.490 10 O -0.540 6.540 11 N -0.576 5.576 12 C 0.123 3.877 13 C 0.054 3.946 14 N -0.539 5.539 15 C 0.208 3.792 16 C -0.524 4.524 17 H 0.068 0.932 18 C 0.001 3.999 19 N -0.935 5.935 20 Si 0.971 3.029 21 H -0.267 1.267 22 H -0.286 1.286 23 H -0.267 1.267 24 C 0.038 3.962 25 C 0.095 3.905 26 C 0.089 3.911 27 N -0.490 5.490 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.165 0.835 32 H 0.147 0.853 33 H 0.434 0.566 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.013 0.987 37 H 0.087 0.913 38 H -0.041 1.041 39 H 0.008 0.992 40 H 0.264 0.736 41 H 0.016 0.984 42 H 0.086 0.914 43 H 0.140 0.860 44 H 0.086 0.914 45 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.853 -4.765 18.033 27.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.035 4.035 3 C -0.171 4.171 4 C -0.111 4.111 5 C -0.027 4.027 6 N -0.272 5.272 7 C 0.300 3.700 8 O -0.378 6.378 9 C 0.292 3.708 10 O -0.418 6.418 11 N -0.309 5.309 12 C 0.001 3.999 13 C -0.075 4.075 14 N -0.264 5.264 15 C 0.082 3.918 16 C -0.562 4.562 17 H 0.087 0.913 18 C -0.198 4.198 19 N -0.575 5.575 20 Si 0.795 3.205 21 H -0.192 1.192 22 H -0.212 1.212 23 H -0.192 1.192 24 C -0.091 4.091 25 C -0.026 4.026 26 C -0.071 4.071 27 N -0.200 5.200 28 H 0.104 0.896 29 H 0.094 0.906 30 H 0.116 0.884 31 H 0.183 0.817 32 H 0.165 0.835 33 H 0.274 0.726 34 H 0.112 0.888 35 H 0.121 0.879 36 H 0.032 0.968 37 H 0.105 0.895 38 H -0.023 1.023 39 H 0.026 0.974 40 H 0.073 0.927 41 H 0.035 0.965 42 H 0.104 0.896 43 H 0.157 0.843 44 H 0.105 0.895 45 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -21.242 -4.888 18.012 28.277 hybrid contribution 1.833 -0.129 -0.929 2.059 sum -19.409 -5.017 17.083 26.339 Atomic orbital electron populations 1.20793 0.86567 1.04536 1.03943 1.21878 0.98724 0.88092 0.94773 1.22203 0.93595 1.00515 1.00762 1.21894 0.95323 0.97828 0.96013 1.18896 0.82747 0.96067 1.04946 1.42913 1.04298 1.30032 1.50003 1.20153 0.88106 0.82827 0.78885 1.90551 1.71513 1.31874 1.43838 1.19875 0.87845 0.81982 0.81080 1.90753 1.71413 1.34120 1.45551 1.48179 1.07932 1.36003 1.38762 1.22032 0.77229 1.04295 0.96356 1.22391 1.00634 0.91804 0.92678 1.62050 1.02847 1.46032 1.15463 1.19380 0.94497 0.93146 0.84780 1.21430 0.95845 1.45260 0.93659 0.91341 1.25936 1.03581 0.95448 0.94795 1.70080 1.38407 1.50241 0.98794 0.85414 0.78713 0.79206 0.77153 1.19154 1.21174 1.19191 1.22548 0.89141 0.99592 0.97799 1.22856 0.99459 0.93857 0.86466 1.22927 0.89286 0.97614 0.97266 1.67596 1.08967 1.30185 1.13203 0.89618 0.90593 0.88448 0.81703 0.83535 0.72584 0.88821 0.87918 0.96842 0.89473 1.02337 0.97375 0.92716 0.96531 0.89559 0.84276 0.89530 0.80361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.93 10.17 71.24 0.72 -0.21 16 2 C 0.10 1.61 6.78 42.56 0.29 1.90 16 3 C -0.15 -2.18 9.73 22.34 0.22 -1.96 16 4 C -0.08 -1.49 8.81 22.59 0.20 -1.29 16 5 C 0.07 1.25 6.32 38.30 0.24 1.49 16 6 N -0.62 -11.09 5.34 -304.52 -1.63 -12.71 16 7 C 0.52 11.69 7.59 87.24 0.66 12.35 16 8 O -0.50 -12.32 10.69 -3.31 -0.04 -12.36 16 9 C 0.51 13.45 7.74 87.24 0.68 14.13 16 10 O -0.54 -15.59 15.96 -3.27 -0.05 -15.64 16 11 N -0.58 -16.37 3.00 -818.75 -2.46 -18.82 16 12 C 0.12 3.62 6.65 86.50 0.57 4.20 16 13 C 0.05 2.02 5.47 86.54 0.47 2.50 16 14 N -0.54 -22.59 4.62 -898.89 -4.15 -26.75 16 15 C 0.21 10.93 4.72 85.56 0.40 11.33 16 16 C -0.52 -28.93 8.41 25.60 0.22 -28.72 16 17 H 0.07 3.64 7.13 -2.91 -0.02 3.62 16 18 C 0.00 0.03 5.46 84.66 0.46 0.49 16 19 N -0.93 -55.86 13.29 21.45 0.28 -55.57 16 20 Si 0.97 43.51 29.54 68.60 2.03 45.54 16 21 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 22 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 23 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 24 C 0.04 1.34 5.62 86.38 0.49 1.82 16 25 C 0.09 2.67 6.10 86.35 0.53 3.20 16 26 C 0.09 1.50 11.12 84.86 0.94 2.44 16 27 N -0.49 -9.25 10.26 -183.32 -1.88 -11.13 16 28 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.10 0.46 8.08 -2.39 -0.02 0.44 16 31 H 0.17 1.43 8.06 -2.91 -0.02 1.40 16 32 H 0.15 2.77 6.32 -2.91 -0.02 2.75 16 33 H 0.43 6.12 8.30 -92.71 -0.77 5.35 16 34 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.10 2.85 7.05 -2.39 -0.02 2.83 16 36 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.09 3.48 6.67 -2.39 -0.02 3.46 16 38 H -0.04 -2.38 8.12 -2.39 -0.02 -2.40 16 39 H 0.01 0.46 7.97 -2.39 -0.02 0.44 16 40 H 0.26 14.90 8.31 -92.70 -0.77 14.13 16 41 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.09 2.96 7.99 -2.39 -0.02 2.94 16 43 H 0.14 3.69 4.45 -37.81 -0.17 3.52 16 44 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 45 H 0.18 2.11 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -68.64 370.05 -0.70 -69.34 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: 0.10 Total: 14.44 kcal Atomic # 6 Polarization: 16.57 SS G_CDS: 7.09 Total: 23.67 kcal Atomic # 7 Polarization: -115.15 SS G_CDS: -9.83 Total: -124.99 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: -0.09 Total: -28.00 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -68.64 -0.70 -69.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602078712.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.013 kcal (2) G-P(sol) polarization free energy of solvation -68.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds