Wall clock time and date at job start Tue Mar 31 2020 16:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38162 * 120.03306 * 2 1 4 4 C 1.38240 * 120.05940 * 180.29863 * 3 2 1 5 5 C 1.38284 * 120.11113 * 359.67271 * 4 3 2 6 6 C 1.38125 * 120.05396 * 0.02562 * 5 4 3 7 7 C 1.38715 * 120.02740 * 179.67308 * 2 1 3 8 8 O 1.35904 * 120.05453 * 0.02562 * 7 2 1 9 9 C 1.42904 * 116.99848 * 179.72440 * 8 7 2 10 10 C 1.53000 * 109.46804 * 179.97438 * 9 8 7 11 11 H 1.09002 * 109.47398 * 305.00087 * 10 9 8 12 12 O 1.42896 * 109.47231 * 65.00154 * 10 9 8 13 13 C 1.52997 * 109.47060 * 184.99918 * 10 9 8 14 14 N 1.46496 * 109.47484 * 175.00385 * 13 10 9 15 15 C 1.35312 * 125.87108 * 124.99816 * 14 13 10 16 16 C 1.35349 * 106.17466 * 180.02562 * 15 14 13 17 17 C 1.50706 * 126.75126 * 179.97438 * 16 15 14 18 18 N 1.46494 * 109.47049 * 95.00102 * 17 16 15 19 19 C 1.36941 * 119.99992 * 180.02562 * 18 17 16 20 20 H 1.08004 * 119.99632 * 359.97438 * 19 18 17 21 21 C 1.38811 * 120.00054 * 179.97438 * 19 18 17 22 22 N 1.31614 * 120.00430 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99760 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47224 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.46974 * 119.99571 * 23 21 19 26 26 H 1.48500 * 109.47136 * 239.99882 * 23 21 19 27 27 N 1.33775 * 106.49918 * 359.97438 * 16 15 14 28 28 N 1.28639 * 108.88218 * 359.73748 * 27 16 15 29 29 H 1.08991 * 109.47430 * 270.32126 * 1 2 3 30 30 H 1.08999 * 109.46818 * 30.33032 * 1 2 3 31 31 H 1.09007 * 109.47109 * 150.32074 * 1 2 3 32 32 H 1.08004 * 119.96951 * 359.97438 * 3 2 1 33 33 H 1.07999 * 119.94728 * 179.69934 * 4 3 2 34 34 H 1.08000 * 119.97590 * 180.02562 * 5 4 3 35 35 H 1.08008 * 120.02912 * 179.97438 * 6 5 4 36 36 H 1.09002 * 109.47048 * 59.99629 * 9 8 7 37 37 H 1.08991 * 109.47029 * 299.99688 * 9 8 7 38 38 H 0.96708 * 114.00101 * 59.99127 * 12 10 9 39 39 H 1.09000 * 109.47325 * 295.00173 * 13 10 9 40 40 H 1.09008 * 109.47017 * 55.00082 * 13 10 9 41 41 H 1.07997 * 126.91273 * 0.02750 * 15 14 13 42 42 H 1.09004 * 109.46884 * 214.99864 * 17 16 15 43 43 H 1.08997 * 109.46767 * 334.99700 * 17 16 15 44 44 H 0.97001 * 120.00360 * 359.97438 * 18 17 16 45 45 H 0.96993 * 120.00255 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1961 0.0000 4 6 3.5809 1.1968 -0.0062 5 6 4.2752 0.0009 -0.0057 6 6 3.5886 -1.1976 0.0006 7 6 2.2011 -1.2010 0.0069 8 8 1.5233 -2.3789 0.0130 9 6 2.3033 -3.5762 0.0138 10 6 1.3730 -4.7909 0.0217 11 1 0.6876 -4.7182 0.8661 12 8 0.6263 -4.8269 -1.1961 13 6 2.2043 -6.0691 0.1482 14 7 1.3102 -7.2225 0.2757 15 6 1.3171 -8.3221 -0.5128 16 6 0.3348 -9.1275 -0.0454 17 6 -0.0594 -10.4771 -0.5880 18 7 0.6262 -11.5270 0.1694 19 6 0.4218 -12.8437 -0.1466 20 1 -0.2451 -13.1080 -0.9539 21 6 1.0719 -13.8386 0.5707 22 7 1.8851 -13.5165 1.5542 23 14 0.7925 -15.6348 0.1400 24 1 -0.1600 -15.7292 -0.9954 25 1 2.0843 -16.2584 -0.2438 26 1 0.2305 -16.3444 1.3172 27 7 -0.2175 -8.4898 0.9928 28 7 0.3868 -7.3667 1.1609 29 1 -0.3634 0.0058 1.0275 30 1 -0.3633 0.8870 -0.5190 31 1 -0.3634 -0.8929 -0.5089 32 1 1.6585 2.1315 -0.0004 33 1 4.1196 2.1328 -0.0111 34 1 5.3552 0.0039 -0.0101 35 1 4.1313 -2.1315 0.0007 36 1 2.9356 -3.5974 0.9014 37 1 2.9287 -3.6030 -0.8784 38 1 1.1732 -4.8914 -1.9911 39 1 2.8258 -6.1877 -0.7393 40 1 2.8403 -6.0030 1.0310 41 1 1.9743 -8.5178 -1.3471 42 1 -1.1376 -10.6059 -0.4933 43 1 0.2236 -10.5430 -1.6385 44 1 1.2255 -11.2896 0.8942 45 1 2.3395 -14.2117 2.0551 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603256007.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:50:18 Heat of formation + Delta-G solvation = 52.049797 kcal Electronic energy + Delta-G solvation = -26814.569120 eV Core-core repulsion = 22835.402575 eV Total energy + Delta-G solvation = -3979.166545 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.95738 -40.75943 -38.71514 -37.28217 -35.09878 -34.06418 -33.25020 -31.83355 -31.28584 -30.27412 -29.82561 -27.43383 -26.91141 -25.76073 -23.65831 -22.80514 -22.24952 -21.77854 -21.55623 -20.52186 -18.62618 -17.75957 -17.16676 -17.12460 -16.67561 -16.42904 -16.02992 -15.81558 -15.17061 -14.95001 -14.65151 -14.58402 -14.20237 -13.91293 -13.65506 -13.55059 -13.44320 -13.13828 -12.92192 -12.65437 -12.58887 -12.44473 -11.91341 -11.83566 -11.75922 -11.53857 -11.32106 -11.16478 -10.92743 -10.82207 -10.80013 -10.42502 -10.04283 -9.83625 -9.68553 -9.27933 -8.87516 -8.81209 -8.55738 -6.90089 -5.72876 -3.02313 0.86930 0.99888 1.80309 2.18724 2.73620 2.94727 3.30796 3.46356 3.52056 3.54420 3.70890 3.97340 4.13181 4.22919 4.32459 4.38320 4.42845 4.60207 4.63165 4.63759 4.72613 4.80464 4.86624 4.93643 5.16025 5.23570 5.25811 5.36429 5.37775 5.44878 5.50020 5.65065 5.84137 5.84748 5.88480 6.01712 6.10301 6.19418 6.33615 6.42993 6.68483 6.73125 6.81092 6.93067 7.09912 7.73163 8.44473 8.85756 9.56355 10.12307 10.48301 11.50034 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.037110 B = 0.001682 C = 0.001644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.323971 B =16638.476829 C =17025.600383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.114 4.114 3 C -0.085 4.085 4 C -0.155 4.155 5 C -0.087 4.087 6 C -0.207 4.207 7 C 0.127 3.873 8 O -0.297 6.297 9 C 0.031 3.969 10 C 0.099 3.901 11 H 0.128 0.872 12 O -0.538 6.538 13 C 0.091 3.909 14 N -0.294 5.294 15 C -0.041 4.041 16 C -0.004 4.004 17 C 0.232 3.768 18 N -0.726 5.726 19 C -0.239 4.239 20 H 0.074 0.926 21 C -0.014 4.014 22 N -0.932 5.932 23 Si 0.909 3.091 24 H -0.279 1.279 25 H -0.292 1.292 26 H -0.291 1.291 27 N -0.251 5.251 28 N -0.093 5.093 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.129 0.871 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.127 0.873 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.374 0.626 39 H 0.111 0.889 40 H 0.110 0.890 41 H 0.188 0.812 42 H 0.039 0.961 43 H 0.038 0.962 44 H 0.385 0.615 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.684 32.467 -6.620 33.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.115 4.115 3 C -0.103 4.103 4 C -0.173 4.173 5 C -0.105 4.105 6 C -0.226 4.226 7 C 0.082 3.918 8 O -0.210 6.210 9 C -0.046 4.046 10 C 0.039 3.961 11 H 0.146 0.854 12 O -0.343 6.343 13 C -0.032 4.032 14 N -0.088 5.088 15 C -0.192 4.192 16 C -0.141 4.141 17 C 0.103 3.897 18 N -0.371 5.371 19 C -0.370 4.370 20 H 0.092 0.908 21 C -0.210 4.210 22 N -0.581 5.581 23 Si 0.740 3.260 24 H -0.204 1.204 25 H -0.220 1.220 26 H -0.219 1.219 27 N -0.118 5.118 28 N -0.072 5.072 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.146 0.854 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.145 0.855 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.221 0.779 39 H 0.129 0.871 40 H 0.128 0.872 41 H 0.205 0.795 42 H 0.057 0.943 43 H 0.055 0.945 44 H 0.219 0.781 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.190 32.957 -5.088 33.749 hybrid contribution 1.793 -1.387 -1.145 2.540 sum 6.983 31.570 -6.233 32.928 Atomic orbital electron populations 1.20644 0.90282 1.03033 1.02524 1.19332 0.96767 0.90280 1.05103 1.20927 0.94168 0.96844 0.98324 1.21064 0.94242 0.98160 1.03850 1.20941 0.99856 0.91878 0.97831 1.21247 0.92872 0.99564 1.08887 1.18859 0.90382 0.85600 0.96943 1.86137 1.34798 1.11639 1.88442 1.23430 0.94355 0.84053 1.02713 1.22219 0.94149 0.89113 0.90643 0.85398 1.86794 1.36445 1.96235 1.14799 1.22510 0.91270 0.83485 1.05918 1.46908 1.25384 1.14750 1.21780 1.23354 1.04892 0.88863 1.02050 1.22451 0.96308 0.99531 0.95839 1.18951 0.96458 0.80403 0.93856 1.42317 1.53825 1.01129 1.39820 1.19294 1.21912 0.82502 1.13253 0.90800 1.24759 0.99822 0.98039 0.98369 1.69689 1.32990 1.31829 1.23595 0.86082 0.77203 0.85202 0.77487 1.20447 1.21952 1.21862 1.75101 1.21379 0.99700 1.15659 1.78218 1.00760 1.15581 1.12633 0.91242 0.91671 0.90805 0.85358 0.85884 0.85799 0.85516 0.90426 0.91137 0.77887 0.87121 0.87232 0.79510 0.94276 0.94470 0.78135 0.93593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 9.79 36.00 0.35 -0.46 16 2 C -0.11 -0.96 5.89 -104.47 -0.62 -1.58 16 3 C -0.08 -0.59 9.70 -39.61 -0.38 -0.97 16 4 C -0.15 -0.99 10.04 -39.56 -0.40 -1.39 16 5 C -0.09 -0.56 10.04 -39.61 -0.40 -0.96 16 6 C -0.21 -1.48 9.04 -39.43 -0.36 -1.84 16 7 C 0.13 1.11 6.66 -39.22 -0.26 0.85 16 8 O -0.30 -2.69 9.15 -24.29 -0.22 -2.91 16 9 C 0.03 0.18 4.37 37.16 0.16 0.34 16 10 C 0.10 0.78 3.33 -26.73 -0.09 0.69 16 11 H 0.13 1.33 8.01 -51.93 -0.42 0.92 16 12 O -0.54 -5.08 13.25 -40.08 -0.53 -5.61 16 13 C 0.09 0.67 6.09 -4.05 -0.02 0.65 16 14 N -0.29 -3.99 3.38 -61.26 -0.21 -4.20 16 15 C -0.04 -0.62 11.50 -17.05 -0.20 -0.81 16 16 C 0.00 -0.07 6.62 -82.77 -0.55 -0.62 16 17 C 0.23 4.96 6.82 -5.19 -0.04 4.92 16 18 N -0.73 -19.17 5.59 -61.08 -0.34 -19.51 16 19 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 20 H 0.07 2.01 7.83 -52.48 -0.41 1.60 16 21 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 22 N -0.93 -28.85 13.06 55.49 0.72 -28.13 16 23 Si 0.91 22.62 29.55 -169.99 -5.02 17.59 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 27 N -0.25 -5.23 12.41 33.29 0.41 -4.82 16 28 N -0.09 -1.65 12.83 60.35 0.77 -0.88 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 31 H 0.07 0.64 7.53 -51.93 -0.39 0.25 16 32 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 33 H 0.12 0.53 8.06 -52.49 -0.42 0.11 16 34 H 0.12 0.54 8.06 -52.49 -0.42 0.12 16 35 H 0.13 0.64 6.30 -52.48 -0.33 0.31 16 36 H 0.08 0.34 7.66 -51.93 -0.40 -0.06 16 37 H 0.07 0.26 7.66 -51.93 -0.40 -0.14 16 38 H 0.37 1.90 9.05 45.56 0.41 2.31 16 39 H 0.11 0.42 8.07 -51.93 -0.42 0.00 16 40 H 0.11 0.64 8.14 -51.92 -0.42 0.21 16 41 H 0.19 2.07 8.06 -52.49 -0.42 1.64 16 42 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.39 10.95 7.66 -40.82 -0.31 10.63 16 45 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 386.90 15.07 5.83 5.83 Total: -1.00 -37.95 386.90 -7.22 -45.17 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -5.60 Total: 6.07 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: -3.04 Total: -8.60 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: 1.36 Total: -57.53 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: -0.75 Total: -8.52 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.95 -7.22 -45.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603256007.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.216 kcal (2) G-P(sol) polarization free energy of solvation -37.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds