Wall clock time and date at job start Tue Mar 31 2020 16:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38162 * 120.03306 * 2 1 4 4 C 1.38240 * 120.05940 * 180.29863 * 3 2 1 5 5 C 1.38284 * 120.11113 * 359.67271 * 4 3 2 6 6 C 1.38125 * 120.05396 * 0.02562 * 5 4 3 7 7 C 1.38715 * 120.02740 * 179.67308 * 2 1 3 8 8 O 1.35904 * 120.05453 * 0.02562 * 7 2 1 9 9 C 1.42904 * 116.99848 * 179.72440 * 8 7 2 10 10 C 1.53000 * 109.46804 * 179.97438 * 9 8 7 11 11 H 1.09002 * 109.47398 * 305.00087 * 10 9 8 12 12 O 1.42896 * 109.47231 * 65.00154 * 10 9 8 13 13 C 1.52997 * 109.47060 * 184.99918 * 10 9 8 14 14 N 1.46496 * 109.47484 * 175.00385 * 13 10 9 15 15 C 1.35312 * 125.87108 * 124.99816 * 14 13 10 16 16 C 1.35349 * 106.17466 * 180.02562 * 15 14 13 17 17 C 1.50706 * 126.75126 * 179.97438 * 16 15 14 18 18 N 1.46494 * 109.47049 * 95.00102 * 17 16 15 19 19 C 1.36941 * 119.99992 * 180.02562 * 18 17 16 20 20 H 1.08004 * 119.99632 * 359.97438 * 19 18 17 21 21 C 1.38811 * 120.00054 * 179.97438 * 19 18 17 22 22 N 1.31614 * 120.00430 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99760 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47224 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.46974 * 119.99571 * 23 21 19 26 26 H 1.48500 * 109.47136 * 239.99882 * 23 21 19 27 27 N 1.33775 * 106.49918 * 359.97438 * 16 15 14 28 28 N 1.28639 * 108.88218 * 359.73748 * 27 16 15 29 29 H 1.08991 * 109.47430 * 270.32126 * 1 2 3 30 30 H 1.08999 * 109.46818 * 30.33032 * 1 2 3 31 31 H 1.09007 * 109.47109 * 150.32074 * 1 2 3 32 32 H 1.08004 * 119.96951 * 359.97438 * 3 2 1 33 33 H 1.07999 * 119.94728 * 179.69934 * 4 3 2 34 34 H 1.08000 * 119.97590 * 180.02562 * 5 4 3 35 35 H 1.08008 * 120.02912 * 179.97438 * 6 5 4 36 36 H 1.09002 * 109.47048 * 59.99629 * 9 8 7 37 37 H 1.08991 * 109.47029 * 299.99688 * 9 8 7 38 38 H 0.96708 * 114.00101 * 59.99127 * 12 10 9 39 39 H 1.09000 * 109.47325 * 295.00173 * 13 10 9 40 40 H 1.09008 * 109.47017 * 55.00082 * 13 10 9 41 41 H 1.07997 * 126.91273 * 0.02750 * 15 14 13 42 42 H 1.09004 * 109.46884 * 214.99864 * 17 16 15 43 43 H 1.08997 * 109.46767 * 334.99700 * 17 16 15 44 44 H 0.97001 * 120.00360 * 359.97438 * 18 17 16 45 45 H 0.96993 * 120.00255 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1961 0.0000 4 6 3.5809 1.1968 -0.0062 5 6 4.2752 0.0009 -0.0057 6 6 3.5886 -1.1976 0.0006 7 6 2.2011 -1.2010 0.0069 8 8 1.5233 -2.3789 0.0130 9 6 2.3033 -3.5762 0.0138 10 6 1.3730 -4.7909 0.0217 11 1 0.6876 -4.7182 0.8661 12 8 0.6263 -4.8269 -1.1961 13 6 2.2043 -6.0691 0.1482 14 7 1.3102 -7.2225 0.2757 15 6 1.3171 -8.3221 -0.5128 16 6 0.3348 -9.1275 -0.0454 17 6 -0.0594 -10.4771 -0.5880 18 7 0.6262 -11.5270 0.1694 19 6 0.4218 -12.8437 -0.1466 20 1 -0.2451 -13.1080 -0.9539 21 6 1.0719 -13.8386 0.5707 22 7 1.8851 -13.5165 1.5542 23 14 0.7925 -15.6348 0.1400 24 1 -0.1600 -15.7292 -0.9954 25 1 2.0843 -16.2584 -0.2438 26 1 0.2305 -16.3444 1.3172 27 7 -0.2175 -8.4898 0.9928 28 7 0.3868 -7.3667 1.1609 29 1 -0.3634 0.0058 1.0275 30 1 -0.3633 0.8870 -0.5190 31 1 -0.3634 -0.8929 -0.5089 32 1 1.6585 2.1315 -0.0004 33 1 4.1196 2.1328 -0.0111 34 1 5.3552 0.0039 -0.0101 35 1 4.1313 -2.1315 0.0007 36 1 2.9356 -3.5974 0.9014 37 1 2.9287 -3.6030 -0.8784 38 1 1.1732 -4.8914 -1.9911 39 1 2.8258 -6.1877 -0.7393 40 1 2.8403 -6.0030 1.0310 41 1 1.9743 -8.5178 -1.3471 42 1 -1.1376 -10.6059 -0.4933 43 1 0.2236 -10.5430 -1.6385 44 1 1.2255 -11.2896 0.8942 45 1 2.3395 -14.2117 2.0551 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603256007.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:50:17 Heat of formation + Delta-G solvation = 23.198410 kcal Electronic energy + Delta-G solvation = -26815.820210 eV Core-core repulsion = 22835.402575 eV Total energy + Delta-G solvation = -3980.417635 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -44.20284 -41.27761 -39.31055 -37.89078 -36.81291 -35.30320 -33.76929 -33.62854 -32.01909 -31.54269 -30.79118 -28.14395 -27.61354 -27.39688 -24.81613 -24.28796 -22.84528 -22.73058 -22.31116 -21.71226 -19.45714 -19.10713 -18.41456 -17.74302 -17.62602 -17.20600 -16.66400 -16.53340 -16.37342 -15.92492 -15.82817 -15.55668 -15.41402 -15.11745 -14.79246 -14.40526 -14.31839 -14.02190 -13.97721 -13.80215 -13.30986 -13.18593 -13.03361 -12.95857 -12.80268 -12.59557 -12.34456 -12.24451 -12.02813 -11.99896 -11.89209 -11.82728 -11.71498 -11.49814 -10.97144 -10.84221 -10.16650 -9.77200 -9.08163 -9.01338 -7.93038 -5.23328 0.37553 0.49057 0.65053 1.33662 1.48403 1.51792 1.54200 1.62795 2.13591 2.60112 2.81243 3.16275 3.38686 3.40031 3.48132 3.64755 3.70553 3.85173 3.94261 3.96569 4.06651 4.19425 4.21720 4.22191 4.27694 4.30115 4.41340 4.45580 4.52950 4.67761 4.76051 4.76993 4.78115 4.90637 4.97701 5.16554 5.20928 5.29665 5.39811 5.51946 5.52386 5.61411 5.69076 5.88140 6.26954 6.43393 6.68866 7.33769 7.54833 8.05091 8.31304 9.31144 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.037110 B = 0.001682 C = 0.001644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.323971 B =16638.476829 C =17025.600383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.140 4.140 3 C -0.092 4.092 4 C -0.161 4.161 5 C -0.093 4.093 6 C -0.212 4.212 7 C 0.108 3.892 8 O -0.323 6.323 9 C 0.033 3.967 10 C 0.107 3.893 11 H 0.092 0.908 12 O -0.566 6.566 13 C 0.080 3.920 14 N -0.277 5.277 15 C -0.014 4.014 16 C -0.042 4.042 17 C 0.236 3.764 18 N -0.739 5.739 19 C -0.243 4.243 20 H 0.084 0.916 21 C -0.078 4.078 22 N -0.973 5.973 23 Si 0.979 3.021 24 H -0.262 1.262 25 H -0.290 1.290 26 H -0.298 1.298 27 N -0.303 5.303 28 N -0.114 5.114 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.055 0.945 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.147 0.853 35 H 0.148 0.852 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.392 0.608 39 H 0.161 0.839 40 H 0.132 0.868 41 H 0.233 0.767 42 H 0.025 0.975 43 H 0.064 0.936 44 H 0.371 0.629 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.896 33.568 -8.514 35.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.141 4.141 3 C -0.110 4.110 4 C -0.179 4.179 5 C -0.111 4.111 6 C -0.231 4.231 7 C 0.063 3.937 8 O -0.237 6.237 9 C -0.043 4.043 10 C 0.047 3.953 11 H 0.110 0.890 12 O -0.374 6.374 13 C -0.040 4.040 14 N -0.071 5.071 15 C -0.166 4.166 16 C -0.181 4.181 17 C 0.108 3.892 18 N -0.381 5.381 19 C -0.375 4.375 20 H 0.102 0.898 21 C -0.270 4.270 22 N -0.624 5.624 23 Si 0.808 3.192 24 H -0.186 1.186 25 H -0.217 1.217 26 H -0.225 1.225 27 N -0.170 5.170 28 N -0.093 5.093 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.074 0.926 32 H 0.162 0.838 33 H 0.162 0.838 34 H 0.164 0.836 35 H 0.166 0.834 36 H 0.112 0.888 37 H 0.119 0.881 38 H 0.243 0.757 39 H 0.178 0.822 40 H 0.150 0.850 41 H 0.249 0.751 42 H 0.043 0.957 43 H 0.082 0.918 44 H 0.202 0.798 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 7.385 34.114 -7.012 35.602 hybrid contribution 1.130 -1.543 -0.606 2.006 sum 8.515 32.571 -7.618 34.517 Atomic orbital electron populations 1.20593 0.90468 1.02782 1.02263 1.19593 0.97071 0.91129 1.06296 1.21187 0.94791 0.97019 0.97970 1.21401 0.94161 0.99256 1.03076 1.21306 1.01117 0.91664 0.97015 1.21523 0.92287 1.00863 1.08390 1.19088 0.91240 0.85482 0.97926 1.86092 1.36237 1.12560 1.88796 1.23504 0.93729 0.82094 1.04935 1.22014 0.93735 0.90450 0.89146 0.88963 1.86753 1.38171 1.96404 1.16083 1.23125 0.90568 0.80888 1.09396 1.47335 1.24282 1.15665 1.19787 1.23852 1.03155 0.87707 1.01865 1.22304 0.98881 0.99684 0.97202 1.18956 0.95122 0.80596 0.94536 1.42518 1.53929 1.01751 1.39937 1.19756 1.21114 0.83683 1.12918 0.89767 1.25639 1.00171 1.02490 0.98669 1.69857 1.34529 1.32901 1.25097 0.84985 0.77255 0.79630 0.77326 1.18584 1.21742 1.22510 1.75020 1.23494 1.01178 1.17273 1.78101 1.02188 1.14852 1.14165 0.91563 0.90257 0.92611 0.83787 0.83850 0.83573 0.83434 0.88763 0.88147 0.75726 0.82156 0.85048 0.75084 0.95731 0.91806 0.79819 0.94085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.63 9.79 71.24 0.70 -0.93 16 2 C -0.14 -2.32 5.89 -19.77 -0.12 -2.44 16 3 C -0.09 -1.18 9.70 22.25 0.22 -0.96 16 4 C -0.16 -1.74 10.04 22.28 0.22 -1.52 16 5 C -0.09 -0.98 10.04 22.25 0.22 -0.75 16 6 C -0.21 -2.56 9.04 22.36 0.20 -2.36 16 7 C 0.11 1.79 6.66 22.51 0.15 1.94 16 8 O -0.32 -5.67 9.15 -87.83 -0.80 -6.48 16 9 C 0.03 0.31 4.37 71.98 0.31 0.63 16 10 C 0.11 1.51 3.33 30.59 0.10 1.62 16 11 H 0.09 1.98 8.01 -2.39 -0.02 1.96 16 12 O -0.57 -9.92 13.25 -144.34 -1.91 -11.83 16 13 C 0.08 0.91 6.09 86.38 0.53 1.44 16 14 N -0.28 -6.97 3.38 -347.74 -1.18 -8.14 16 15 C -0.01 -0.38 11.50 83.49 0.96 0.58 16 16 C -0.04 -1.61 6.62 41.60 0.28 -1.34 16 17 C 0.24 10.04 6.82 85.64 0.58 10.63 16 18 N -0.74 -39.32 5.59 -347.17 -1.94 -41.26 16 19 C -0.24 -13.81 9.99 84.03 0.84 -12.98 16 20 H 0.08 4.50 7.83 -2.91 -0.02 4.47 16 21 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 22 N -0.97 -61.14 13.06 21.65 0.28 -60.86 16 23 Si 0.98 46.59 29.55 68.60 2.03 48.62 16 24 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 25 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 26 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 27 N -0.30 -12.95 12.41 -48.59 -0.60 -13.55 16 28 N -0.11 -4.08 12.83 37.02 0.48 -3.60 16 29 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.08 0.93 8.09 -2.39 -0.02 0.91 16 31 H 0.05 1.04 7.53 -2.38 -0.02 1.03 16 32 H 0.14 1.22 8.06 -2.91 -0.02 1.20 16 33 H 0.14 0.87 8.06 -2.91 -0.02 0.85 16 34 H 0.15 0.80 8.06 -2.91 -0.02 0.78 16 35 H 0.15 1.00 6.30 -2.91 -0.02 0.98 16 36 H 0.09 0.56 7.66 -2.39 -0.02 0.54 16 37 H 0.10 0.34 7.66 -2.39 -0.02 0.32 16 38 H 0.39 2.97 9.05 -74.05 -0.67 2.30 16 39 H 0.16 0.29 8.07 -2.39 -0.02 0.27 16 40 H 0.13 1.04 8.14 -2.38 -0.02 1.02 16 41 H 0.23 3.99 8.06 -2.91 -0.02 3.97 16 42 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 44 H 0.37 21.53 7.66 -92.71 -0.71 20.82 16 45 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -86.44 386.90 1.66 -84.78 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: -0.35 Total: 22.87 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: 5.66 Total: -10.54 kcal Atomic # 7 Polarization: -124.46 SS G_CDS: -2.96 Total: -127.42 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -2.72 Total: -18.31 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -86.44 1.66 -84.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603256007.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.979 kcal (2) G-P(sol) polarization free energy of solvation -86.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds