Wall clock time and date at job start Tue Mar 31 2020 16:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 119.99645 * 2 1 4 4 H 1.48504 * 109.47381 * 90.00253 * 3 2 1 5 5 H 1.48504 * 109.46890 * 209.99848 * 3 2 1 6 6 H 1.48501 * 109.47345 * 330.00008 * 3 2 1 7 7 C 1.37878 * 120.00110 * 180.27641 * 2 1 3 8 8 H 1.07994 * 119.99782 * 179.72297 * 7 2 1 9 9 C 1.50700 * 119.99894 * 359.72423 * 7 2 1 10 10 N 1.46501 * 109.47188 * 179.97438 * 9 7 2 11 11 C 1.34967 * 125.97435 * 124.99754 * 10 9 7 12 12 C 1.35240 * 107.85930 * 180.02562 * 11 10 9 13 13 C 1.40409 * 107.87046 * 0.02562 * 12 11 10 14 14 N 1.40159 * 125.97665 * 180.02562 * 13 12 11 15 15 C 1.34770 * 119.99553 * 359.97438 * 14 13 12 16 16 O 1.21291 * 120.00764 * 354.82732 * 15 14 13 17 17 C 1.50703 * 119.99622 * 174.82577 * 15 14 13 18 18 C 1.50701 * 112.85056 * 55.40199 * 17 15 14 19 19 O 1.21282 * 119.99556 * 245.05381 * 18 17 15 20 20 N 1.34776 * 120.00070 * 65.04922 * 18 17 15 21 21 C 1.46500 * 119.99783 * 174.98399 * 20 18 17 22 22 C 1.52998 * 117.50059 * 223.62396 * 21 20 18 23 23 C 1.53003 * 117.49575 * 154.99981 * 21 20 18 24 24 C 1.53782 * 113.61538 * 284.20006 * 17 15 14 25 25 C 1.53961 * 87.02000 * 220.04986 * 24 17 15 26 26 C 1.53783 * 87.11057 * 25.36463 * 25 24 17 27 27 N 1.31226 * 108.04800 * 359.71478 * 13 12 11 28 28 H 0.97003 * 120.00308 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47390 * 300.00001 * 9 7 2 30 30 H 1.09008 * 109.47079 * 60.00126 * 9 7 2 31 31 H 1.08001 * 126.07263 * 0.02657 * 11 10 9 32 32 H 1.08001 * 126.06438 * 179.97438 * 12 11 10 33 33 H 0.96999 * 119.99770 * 179.97438 * 14 13 12 34 34 H 0.97004 * 119.99930 * 354.98894 * 20 18 17 35 35 H 1.08996 * 115.55397 * 9.33597 * 21 20 18 36 36 H 1.08998 * 117.49892 * 0.02562 * 22 21 20 37 37 H 1.09001 * 117.50107 * 145.02391 * 22 21 20 38 38 H 1.09000 * 117.49824 * 214.97831 * 23 21 20 39 39 H 1.08996 * 117.50011 * 0.02562 * 23 21 20 40 40 H 1.08988 * 113.61770 * 334.57039 * 24 17 15 41 41 H 1.09003 * 113.61064 * 105.47171 * 24 17 15 42 42 H 1.09006 * 113.53560 * 270.81400 * 25 24 17 43 43 H 1.09001 * 113.74206 * 139.94966 * 25 24 17 44 44 H 1.08998 * 113.61020 * 220.09412 * 26 25 24 45 45 H 1.08992 * 113.69022 * 89.19757 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5466 1.4402 -0.7000 6 1 1.4464 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0058 8 1 3.0844 -1.1940 -0.0103 9 6 1.2510 -2.4991 -0.0058 10 7 2.2030 -3.6126 -0.0131 11 6 2.2461 -4.6247 0.8788 12 6 3.2635 -5.4438 0.5279 13 6 3.8671 -4.9123 -0.6231 14 7 4.9600 -5.4611 -1.3078 15 6 5.5264 -6.6023 -0.8682 16 8 5.1525 -7.1041 0.1708 17 6 6.6244 -7.2551 -1.6678 18 6 7.7793 -6.3267 -1.9427 19 8 8.0317 -5.9936 -3.0812 20 7 8.5315 -5.8667 -0.9234 21 6 9.7191 -5.0540 -1.1981 22 6 10.9879 -5.3654 -0.4018 23 6 10.1885 -4.0959 -0.1014 24 6 6.1195 -7.9969 -2.9167 25 6 7.1472 -9.0934 -2.5822 26 6 7.0534 -8.6265 -1.1200 27 7 3.2247 -3.8156 -0.9495 28 1 -0.4851 -0.8400 -0.0004 29 1 0.6281 -2.5591 0.8866 30 1 0.6207 -2.5547 -0.8933 31 1 1.5855 -4.7570 1.7229 32 1 3.5597 -6.3460 1.0423 33 1 5.3086 -5.0196 -2.0980 34 1 8.2865 -6.0737 -0.0079 35 1 9.8399 -4.7327 -2.2326 36 1 10.9392 -6.1753 0.3261 37 1 11.9438 -5.2493 -0.9125 38 1 10.6185 -3.1445 -0.4145 39 1 9.6140 -4.0705 0.8245 40 1 5.0847 -8.3298 -2.8382 41 1 6.3270 -7.4726 -3.8495 42 1 8.1256 -8.9250 -3.0325 43 1 6.7764 -10.1059 -2.7420 44 1 8.0137 -8.6098 -0.6046 45 1 6.2748 -9.1313 -0.5482 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609795189.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:22 Heat of formation + Delta-G solvation = 58.395971 kcal Electronic energy + Delta-G solvation = -28314.467451 eV Core-core repulsion = 24335.576097 eV Total energy + Delta-G solvation = -3978.891354 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.63903 -40.55534 -39.20531 -37.90452 -36.88225 -34.94381 -33.71202 -33.19916 -31.02100 -29.46589 -28.08950 -26.22733 -25.98349 -23.57742 -23.04440 -22.75297 -22.03230 -21.43179 -20.71319 -19.86818 -19.53068 -17.99794 -17.22638 -16.99057 -16.84837 -16.34599 -15.70110 -15.45825 -15.05249 -14.97785 -14.85103 -14.38829 -14.05256 -13.81555 -13.78008 -13.29046 -13.13808 -12.79533 -12.56476 -12.47760 -12.22452 -11.97776 -11.94377 -11.77242 -11.56244 -11.34935 -11.18224 -10.90728 -10.84562 -10.80304 -10.54415 -10.29511 -10.19166 -10.06193 -9.66925 -9.15119 -9.03954 -8.60289 -8.28279 -7.60601 -6.60765 -4.34915 1.96408 2.09369 2.57243 2.60352 2.76522 3.35015 3.39681 3.51524 3.54067 3.55915 3.68076 4.03583 4.10578 4.20402 4.38467 4.38571 4.39811 4.47114 4.56782 4.62102 4.98662 5.13094 5.26201 5.29437 5.37776 5.39493 5.44595 5.54747 5.55431 5.62012 5.64046 5.68809 5.70369 5.97951 6.08597 6.09230 6.31908 6.41881 6.52293 6.70608 7.01555 7.23139 7.36436 7.64847 7.73928 7.77759 8.01767 8.31536 8.48001 8.58738 9.33279 10.77018 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012064 B = 0.003069 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.399441 B = 9121.000575 C =10615.988787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.023 3.977 3 Si 1.079 2.921 4 H -0.285 1.285 5 H -0.286 1.286 6 H -0.281 1.281 7 C -0.608 4.608 8 H 0.064 0.936 9 C 0.249 3.751 10 N -0.315 5.315 11 C 0.051 3.949 12 C -0.285 4.285 13 C 0.256 3.744 14 N -0.624 5.624 15 C 0.539 3.461 16 O -0.506 6.506 17 C -0.134 4.134 18 C 0.548 3.452 19 O -0.521 6.521 20 N -0.696 5.696 21 C 0.077 3.923 22 C -0.191 4.191 23 C -0.187 4.187 24 C -0.108 4.108 25 C -0.140 4.140 26 C -0.102 4.102 27 N -0.297 5.297 28 H 0.267 0.733 29 H 0.047 0.953 30 H 0.035 0.965 31 H 0.169 0.831 32 H 0.161 0.839 33 H 0.413 0.587 34 H 0.406 0.594 35 H 0.140 0.860 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.100 0.900 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.239 -17.228 -1.131 25.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.181 4.181 3 Si 0.906 3.094 4 H -0.212 1.212 5 H -0.212 1.212 6 H -0.207 1.207 7 C -0.647 4.647 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.097 5.097 11 C -0.098 4.098 12 C -0.316 4.316 13 C 0.003 3.997 14 N -0.271 5.271 15 C 0.324 3.676 16 O -0.379 6.379 17 C -0.141 4.141 18 C 0.333 3.667 19 O -0.396 6.396 20 N -0.345 5.345 21 C -0.029 4.029 22 C -0.230 4.230 23 C -0.225 4.225 24 C -0.146 4.146 25 C -0.177 4.177 26 C -0.140 4.140 27 N -0.128 5.128 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.186 0.814 32 H 0.178 0.822 33 H 0.249 0.751 34 H 0.241 0.759 35 H 0.158 0.842 36 H 0.116 0.884 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.118 0.882 40 H 0.115 0.885 41 H 0.113 0.887 42 H 0.104 0.896 43 H 0.099 0.901 44 H 0.096 0.904 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 17.772 -14.658 -2.056 23.129 hybrid contribution 0.211 -2.000 0.789 2.160 sum 17.983 -16.658 -1.268 24.546 Atomic orbital electron populations 1.70823 1.06782 1.30467 1.45946 1.25924 0.96305 1.02815 0.93092 0.83391 0.74735 0.74327 0.76968 1.21189 1.21217 1.20656 1.22122 0.95407 0.90396 1.56731 0.91809 1.19785 0.86300 0.82811 0.98043 1.48824 1.23491 1.19319 1.18048 1.22571 1.00378 0.90059 0.96839 1.21488 1.02074 1.06354 1.01687 1.19105 0.91445 0.94477 0.94687 1.42477 1.29892 1.24388 1.30295 1.19811 0.82780 0.79782 0.85275 1.90660 1.62260 1.62700 1.22319 1.22397 0.93947 0.96245 1.01498 1.19507 0.82266 0.79936 0.85032 1.90726 1.69970 1.57593 1.21280 1.45317 1.26786 1.52738 1.09677 1.21655 0.85196 0.97439 0.98581 1.23440 0.96118 0.99608 1.03819 1.23403 1.03542 0.95182 1.00405 1.22897 1.00109 0.95804 0.95762 1.22903 0.99912 0.99285 0.95646 1.22889 1.02868 0.90759 0.97473 1.77394 1.03550 1.16227 1.15622 0.92237 0.93554 0.94713 0.81407 0.82179 0.75133 0.75924 0.84191 0.88421 0.87845 0.87574 0.88197 0.88477 0.88706 0.89628 0.90107 0.90445 0.87334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.32 13.65 55.43 0.76 -25.56 16 2 C 0.02 0.65 5.46 -17.82 -0.10 0.56 16 3 Si 1.08 25.03 29.90 -169.99 -5.08 19.94 16 4 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.61 -17.13 9.24 -34.44 -0.32 -17.45 16 8 H 0.06 1.88 7.81 -52.49 -0.41 1.47 16 9 C 0.25 6.28 5.57 -5.19 -0.03 6.25 16 10 N -0.32 -7.33 3.67 -62.56 -0.23 -7.56 16 11 C 0.05 1.01 11.44 -17.24 -0.20 0.81 16 12 C -0.28 -5.49 9.61 -39.83 -0.38 -5.87 16 13 C 0.26 5.13 8.10 -154.38 -1.25 3.88 16 14 N -0.62 -9.97 5.39 -11.13 -0.06 -10.03 16 15 C 0.54 7.48 6.81 -10.99 -0.07 7.40 16 16 O -0.51 -7.98 13.12 5.55 0.07 -7.91 16 17 C -0.13 -1.42 1.06 -155.99 -0.17 -1.58 16 18 C 0.55 6.23 6.16 -10.99 -0.07 6.16 16 19 O -0.52 -7.23 15.50 5.56 0.09 -7.15 16 20 N -0.70 -6.72 5.56 -53.81 -0.30 -7.02 16 21 C 0.08 0.68 6.44 -67.93 -0.44 0.25 16 22 C -0.19 -1.27 10.46 -26.73 -0.28 -1.55 16 23 C -0.19 -1.42 10.46 -26.73 -0.28 -1.70 16 24 C -0.11 -1.01 7.10 -25.82 -0.18 -1.20 16 25 C -0.14 -1.06 7.81 -25.82 -0.20 -1.26 16 26 C -0.10 -0.85 6.95 -25.91 -0.18 -1.03 16 27 N -0.30 -6.93 12.43 31.44 0.39 -6.54 16 28 H 0.27 7.59 7.22 -40.82 -0.29 7.30 16 29 H 0.05 1.12 7.94 -51.93 -0.41 0.71 16 30 H 0.04 0.91 8.00 -51.92 -0.42 0.50 16 31 H 0.17 2.66 8.06 -52.49 -0.42 2.24 16 32 H 0.16 2.91 5.93 -52.49 -0.31 2.60 16 33 H 0.41 6.19 8.61 -40.82 -0.35 5.84 16 34 H 0.41 3.50 8.83 -40.82 -0.36 3.14 16 35 H 0.14 1.38 7.39 -51.93 -0.38 1.00 16 36 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.10 0.88 8.09 -51.94 -0.42 0.46 16 41 H 0.09 0.95 7.34 -51.93 -0.38 0.57 16 42 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.08 0.55 8.09 -51.93 -0.42 0.13 16 45 H 0.11 0.95 7.52 -51.93 -0.39 0.56 16 LS Contribution 382.89 15.07 5.77 5.77 Total: -1.00 -33.57 382.89 -9.05 -42.62 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -6.31 Total: 9.77 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: -4.14 Total: -6.33 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: 0.56 Total: -56.72 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: 0.16 Total: -15.06 kcal Atomic # 14 Polarization: 25.03 SS G_CDS: -5.08 Total: 19.94 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.57 -9.05 -42.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609795189.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.013 kcal (2) G-P(sol) polarization free energy of solvation -33.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds