Wall clock time and date at job start Tue Mar 31 2020 16:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 119.99645 * 2 1 4 4 H 1.48504 * 109.47381 * 90.00253 * 3 2 1 5 5 H 1.48504 * 109.46890 * 209.99848 * 3 2 1 6 6 H 1.48501 * 109.47345 * 330.00008 * 3 2 1 7 7 C 1.37878 * 120.00110 * 180.27641 * 2 1 3 8 8 H 1.07994 * 119.99782 * 179.72297 * 7 2 1 9 9 C 1.50700 * 119.99894 * 359.72423 * 7 2 1 10 10 N 1.46501 * 109.47188 * 179.97438 * 9 7 2 11 11 C 1.34967 * 125.97435 * 124.99754 * 10 9 7 12 12 C 1.35240 * 107.85930 * 180.02562 * 11 10 9 13 13 C 1.40409 * 107.87046 * 0.02562 * 12 11 10 14 14 N 1.40159 * 125.97665 * 180.02562 * 13 12 11 15 15 C 1.34770 * 119.99553 * 359.97438 * 14 13 12 16 16 O 1.21291 * 120.00764 * 354.82732 * 15 14 13 17 17 C 1.50703 * 119.99622 * 174.82577 * 15 14 13 18 18 C 1.50701 * 112.85056 * 55.40199 * 17 15 14 19 19 O 1.21282 * 119.99556 * 245.05381 * 18 17 15 20 20 N 1.34776 * 120.00070 * 65.04922 * 18 17 15 21 21 C 1.46500 * 119.99783 * 174.98399 * 20 18 17 22 22 C 1.52998 * 117.50059 * 223.62396 * 21 20 18 23 23 C 1.53003 * 117.49575 * 154.99981 * 21 20 18 24 24 C 1.53782 * 113.61538 * 284.20006 * 17 15 14 25 25 C 1.53961 * 87.02000 * 220.04986 * 24 17 15 26 26 C 1.53783 * 87.11057 * 25.36463 * 25 24 17 27 27 N 1.31226 * 108.04800 * 359.71478 * 13 12 11 28 28 H 0.97003 * 120.00308 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47390 * 300.00001 * 9 7 2 30 30 H 1.09008 * 109.47079 * 60.00126 * 9 7 2 31 31 H 1.08001 * 126.07263 * 0.02657 * 11 10 9 32 32 H 1.08001 * 126.06438 * 179.97438 * 12 11 10 33 33 H 0.96999 * 119.99770 * 179.97438 * 14 13 12 34 34 H 0.97004 * 119.99930 * 354.98894 * 20 18 17 35 35 H 1.08996 * 115.55397 * 9.33597 * 21 20 18 36 36 H 1.08998 * 117.49892 * 0.02562 * 22 21 20 37 37 H 1.09001 * 117.50107 * 145.02391 * 22 21 20 38 38 H 1.09000 * 117.49824 * 214.97831 * 23 21 20 39 39 H 1.08996 * 117.50011 * 0.02562 * 23 21 20 40 40 H 1.08988 * 113.61770 * 334.57039 * 24 17 15 41 41 H 1.09003 * 113.61064 * 105.47171 * 24 17 15 42 42 H 1.09006 * 113.53560 * 270.81400 * 25 24 17 43 43 H 1.09001 * 113.74206 * 139.94966 * 25 24 17 44 44 H 1.08998 * 113.61020 * 220.09412 * 26 25 24 45 45 H 1.08992 * 113.69022 * 89.19757 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5466 1.4402 -0.7000 6 1 1.4464 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0058 8 1 3.0844 -1.1940 -0.0103 9 6 1.2510 -2.4991 -0.0058 10 7 2.2030 -3.6126 -0.0131 11 6 2.2461 -4.6247 0.8788 12 6 3.2635 -5.4438 0.5279 13 6 3.8671 -4.9123 -0.6231 14 7 4.9600 -5.4611 -1.3078 15 6 5.5264 -6.6023 -0.8682 16 8 5.1525 -7.1041 0.1708 17 6 6.6244 -7.2551 -1.6678 18 6 7.7793 -6.3267 -1.9427 19 8 8.0317 -5.9936 -3.0812 20 7 8.5315 -5.8667 -0.9234 21 6 9.7191 -5.0540 -1.1981 22 6 10.9879 -5.3654 -0.4018 23 6 10.1885 -4.0959 -0.1014 24 6 6.1195 -7.9969 -2.9167 25 6 7.1472 -9.0934 -2.5822 26 6 7.0534 -8.6265 -1.1200 27 7 3.2247 -3.8156 -0.9495 28 1 -0.4851 -0.8400 -0.0004 29 1 0.6281 -2.5591 0.8866 30 1 0.6207 -2.5547 -0.8933 31 1 1.5855 -4.7570 1.7229 32 1 3.5597 -6.3460 1.0423 33 1 5.3086 -5.0196 -2.0980 34 1 8.2865 -6.0737 -0.0079 35 1 9.8399 -4.7327 -2.2326 36 1 10.9392 -6.1753 0.3261 37 1 11.9438 -5.2493 -0.9125 38 1 10.6185 -3.1445 -0.4145 39 1 9.6140 -4.0705 0.8245 40 1 5.0847 -8.3298 -2.8382 41 1 6.3270 -7.4726 -3.8495 42 1 8.1256 -8.9250 -3.0325 43 1 6.7764 -10.1059 -2.7420 44 1 8.0137 -8.6098 -0.6046 45 1 6.2748 -9.1313 -0.5482 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609795189.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:21 Heat of formation + Delta-G solvation = 36.582293 kcal Electronic energy + Delta-G solvation = -28315.413363 eV Core-core repulsion = 24335.576097 eV Total energy + Delta-G solvation = -3979.837266 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.71131 -41.98579 -40.29338 -38.72435 -37.71270 -36.47285 -35.59329 -33.99919 -32.79513 -31.09157 -29.18791 -27.91016 -26.76061 -25.22809 -24.19710 -23.31824 -23.22947 -22.26304 -22.19486 -21.24819 -20.38432 -19.30572 -19.09126 -18.27888 -17.75838 -17.33912 -17.04421 -16.67184 -16.20100 -16.06961 -15.75408 -15.65027 -15.53666 -15.26082 -15.04880 -14.70091 -14.17718 -13.98318 -13.82483 -13.78943 -13.48516 -13.27490 -13.21569 -12.64060 -12.59629 -12.46230 -12.42324 -12.12935 -12.00695 -11.99959 -11.67783 -11.55121 -11.51691 -11.14695 -11.04219 -10.86008 -10.71059 -9.91210 -9.89265 -9.28410 -8.80820 -6.58640 0.70707 1.04567 1.25068 1.29186 1.48287 1.56098 1.76123 1.78629 2.06183 2.17459 2.46009 2.89678 2.98600 3.23120 3.23702 3.39332 3.45538 3.72216 3.72944 3.83747 3.98452 4.01681 4.08933 4.30774 4.51121 4.61900 4.64954 4.69907 4.72908 4.74054 4.76325 4.77341 4.90926 4.92916 4.98091 4.98882 5.03096 5.16249 5.32675 5.35325 5.51666 5.74393 5.88514 6.00904 6.21755 6.23642 6.38832 6.75480 6.87957 6.92546 7.16749 8.55968 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012064 B = 0.003069 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.399441 B = 9121.000575 C =10615.988787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.018 4.018 3 Si 1.121 2.879 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.275 1.275 7 C -0.622 4.622 8 H 0.043 0.957 9 C 0.259 3.741 10 N -0.341 5.341 11 C 0.057 3.943 12 C -0.286 4.286 13 C 0.264 3.736 14 N -0.624 5.624 15 C 0.545 3.455 16 O -0.520 6.520 17 C -0.131 4.131 18 C 0.547 3.453 19 O -0.551 6.551 20 N -0.688 5.688 21 C 0.051 3.949 22 C -0.168 4.168 23 C -0.188 4.188 24 C -0.112 4.112 25 C -0.127 4.127 26 C -0.095 4.095 27 N -0.347 5.347 28 H 0.262 0.738 29 H 0.057 0.943 30 H 0.016 0.984 31 H 0.205 0.795 32 H 0.175 0.825 33 H 0.416 0.584 34 H 0.411 0.589 35 H 0.126 0.874 36 H 0.109 0.891 37 H 0.117 0.883 38 H 0.111 0.889 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.101 0.899 44 H 0.093 0.907 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.949 -18.520 -0.123 27.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.217 4.217 3 Si 0.942 3.058 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.660 4.660 8 H 0.061 0.939 9 C 0.140 3.860 10 N -0.123 5.123 11 C -0.091 4.091 12 C -0.317 4.317 13 C 0.010 3.990 14 N -0.272 5.272 15 C 0.331 3.669 16 O -0.394 6.394 17 C -0.138 4.138 18 C 0.332 3.668 19 O -0.428 6.428 20 N -0.337 5.337 21 C -0.054 4.054 22 C -0.206 4.206 23 C -0.226 4.226 24 C -0.150 4.150 25 C -0.164 4.164 26 C -0.132 4.132 27 N -0.178 5.178 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.034 0.966 31 H 0.222 0.778 32 H 0.193 0.807 33 H 0.252 0.748 34 H 0.247 0.753 35 H 0.144 0.856 36 H 0.127 0.873 37 H 0.135 0.865 38 H 0.130 0.870 39 H 0.116 0.884 40 H 0.119 0.881 41 H 0.104 0.896 42 H 0.104 0.896 43 H 0.120 0.880 44 H 0.111 0.889 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 19.506 -15.995 -1.018 25.246 hybrid contribution -0.252 -1.712 0.482 1.797 sum 19.254 -17.707 -0.536 26.164 Atomic orbital electron populations 1.70915 1.07403 1.30251 1.47285 1.27249 0.96441 1.06011 0.92042 0.82864 0.73785 0.71066 0.78121 1.19124 1.20797 1.19969 1.22295 0.94595 0.92197 1.56946 0.93865 1.19439 0.86387 0.82735 0.97457 1.48594 1.24112 1.20052 1.19552 1.23241 1.00554 0.88560 0.96743 1.21718 1.01848 1.06667 1.01426 1.19468 0.91494 0.93398 0.94655 1.42700 1.29132 1.25049 1.30338 1.20405 0.82783 0.78673 0.85058 1.90635 1.62906 1.62795 1.23078 1.22495 0.92542 0.96688 1.02066 1.19595 0.82443 0.79860 0.84877 1.90715 1.70936 1.58693 1.22457 1.45308 1.26721 1.52082 1.09582 1.21734 0.86216 0.98966 0.98482 1.23506 0.95394 0.99000 1.02689 1.23459 1.03652 0.95898 0.99598 1.22978 1.00972 0.96366 0.94691 1.22853 0.99257 0.99660 0.94640 1.22940 1.03539 0.88619 0.98152 1.77308 1.04962 1.18398 1.17143 0.92871 0.92524 0.96610 0.77818 0.80741 0.74773 0.75263 0.85618 0.87315 0.86472 0.87042 0.88362 0.88145 0.89641 0.89595 0.88009 0.88890 0.87306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.00 13.65 21.45 0.29 -53.71 16 2 C -0.02 -0.99 5.46 84.66 0.46 -0.53 16 3 Si 1.12 50.16 29.90 68.60 2.05 52.21 16 4 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 7 C -0.62 -35.70 9.24 25.60 0.24 -35.46 16 8 H 0.04 2.61 7.81 -2.91 -0.02 2.59 16 9 C 0.26 13.36 5.57 85.63 0.48 13.83 16 10 N -0.34 -16.05 3.67 -351.84 -1.29 -17.34 16 11 C 0.06 2.19 11.44 83.52 0.96 3.15 16 12 C -0.29 -10.72 9.61 22.11 0.21 -10.51 16 13 C 0.26 10.60 8.10 133.32 1.08 11.68 16 14 N -0.62 -19.91 5.39 -307.51 -1.66 -21.57 16 15 C 0.54 14.58 6.81 87.66 0.60 15.18 16 16 O -0.52 -15.60 13.12 -3.06 -0.04 -15.64 16 17 C -0.13 -2.62 1.06 -53.14 -0.06 -2.67 16 18 C 0.55 12.09 6.16 87.66 0.54 12.63 16 19 O -0.55 -15.33 15.50 -3.04 -0.05 -15.37 16 20 N -0.69 -12.62 5.56 -442.53 -2.46 -15.09 16 21 C 0.05 0.87 6.44 44.99 0.29 1.16 16 22 C -0.17 -1.86 10.46 30.60 0.32 -1.54 16 23 C -0.19 -2.62 10.46 30.60 0.32 -2.30 16 24 C -0.11 -1.98 7.10 31.18 0.22 -1.76 16 25 C -0.13 -1.62 7.81 31.18 0.24 -1.37 16 26 C -0.09 -1.35 6.95 31.12 0.22 -1.13 16 27 N -0.35 -16.54 12.43 -54.45 -0.68 -17.22 16 28 H 0.26 15.12 7.22 -92.71 -0.67 14.45 16 29 H 0.06 2.77 7.94 -2.39 -0.02 2.75 16 30 H 0.02 0.87 8.00 -2.38 -0.02 0.85 16 31 H 0.21 6.02 8.06 -2.91 -0.02 6.00 16 32 H 0.18 6.04 5.93 -2.91 -0.02 6.02 16 33 H 0.42 12.70 8.61 -92.71 -0.80 11.90 16 34 H 0.41 6.52 8.83 -92.71 -0.82 5.70 16 35 H 0.13 2.50 7.39 -2.39 -0.02 2.49 16 36 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.10 1.70 8.09 -2.39 -0.02 1.68 16 41 H 0.08 1.69 7.34 -2.39 -0.02 1.67 16 42 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 43 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.09 1.06 8.09 -2.39 -0.02 1.04 16 45 H 0.11 1.62 7.52 -2.39 -0.02 1.60 16 Total: -1.00 -72.88 382.89 1.81 -71.07 By element: Atomic # 1 Polarization: 32.79 SS G_CDS: -0.48 Total: 32.31 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: 6.11 Total: 0.35 kcal Atomic # 7 Polarization: -119.13 SS G_CDS: -5.79 Total: -124.93 kcal Atomic # 8 Polarization: -30.93 SS G_CDS: -0.09 Total: -31.02 kcal Atomic # 14 Polarization: 50.16 SS G_CDS: 2.05 Total: 52.21 kcal Total: -72.88 1.81 -71.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609795189.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.656 kcal (2) G-P(sol) polarization free energy of solvation -72.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds