Wall clock time and date at job start Tue Mar 31 2020 16:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00497 * 2 1 4 4 H 1.48506 * 109.47064 * 274.06736 * 3 2 1 5 5 H 1.48504 * 109.46788 * 34.06495 * 3 2 1 6 6 H 1.48495 * 109.47209 * 154.06553 * 3 2 1 7 7 C 1.38816 * 119.99830 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00188 * 197.52429 * 7 2 1 9 9 N 1.36939 * 119.99831 * 17.52364 * 7 2 1 10 10 C 1.46935 * 120.62927 * 208.00195 * 9 7 2 11 11 C 1.53190 * 108.77470 * 233.62961 * 10 9 7 12 12 C 1.53046 * 109.31094 * 305.36621 * 11 10 9 13 13 C 1.53004 * 109.45571 * 181.38689 * 12 11 10 14 14 N 1.46501 * 109.46879 * 175.00139 * 13 12 11 15 15 S 1.65594 * 119.99899 * 164.99917 * 14 13 12 16 16 O 1.42101 * 104.27902 * 308.92226 * 15 14 13 17 17 O 1.42111 * 104.27846 * 181.06801 * 15 14 13 18 18 C 1.81400 * 104.45027 * 64.99912 * 15 14 13 19 19 C 1.53002 * 109.46888 * 179.97438 * 18 15 14 20 20 H 1.08996 * 110.80591 * 305.69525 * 19 18 15 21 21 C 1.54814 * 110.90332 * 182.06975 * 19 18 15 22 22 C 1.54103 * 104.18748 * 220.91896 * 21 19 18 23 23 O 1.43743 * 107.29423 * 357.97296 * 22 21 19 24 24 C 1.44428 * 106.99967 * 26.48661 * 23 22 21 25 25 C 1.53041 * 109.53867 * 61.36661 * 12 11 10 26 26 C 1.46927 * 120.63414 * 28.02272 * 9 7 2 27 27 H 0.97001 * 119.99789 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.58141 * 113.84141 * 10 9 7 29 29 H 1.08997 * 109.69994 * 353.48883 * 10 9 7 30 30 H 1.08999 * 109.50036 * 185.41624 * 11 10 9 31 31 H 1.09002 * 109.52555 * 65.32799 * 11 10 9 32 32 H 1.08997 * 109.45974 * 301.35186 * 12 11 10 33 33 H 1.08995 * 109.47145 * 54.99793 * 13 12 11 34 34 H 1.09001 * 109.47239 * 294.99791 * 13 12 11 35 35 H 0.96998 * 120.00029 * 344.99340 * 14 13 12 36 36 H 1.08997 * 109.47137 * 299.99519 * 18 15 14 37 37 H 1.08994 * 109.47333 * 60.00018 * 18 15 14 38 38 H 1.08998 * 110.49151 * 339.60225 * 21 19 18 39 39 H 1.09009 * 110.48471 * 102.24642 * 21 19 18 40 40 H 1.09004 * 109.87478 * 117.39581 * 22 21 19 41 41 H 1.09000 * 109.88142 * 238.39850 * 22 21 19 42 42 H 1.09004 * 110.65190 * 201.48094 * 24 23 22 43 43 H 1.08998 * 110.59812 * 78.46974 * 24 23 22 44 44 H 1.08998 * 109.49940 * 58.58419 * 25 12 11 45 45 H 1.09000 * 109.49706 * 178.68221 * 25 12 11 46 46 H 1.09001 * 109.58566 * 246.16030 * 26 9 7 47 47 H 1.08999 * 109.58279 * 6.44065 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4118 2.0960 -1.3966 5 1 1.4933 2.6263 0.7843 6 1 3.5881 1.4167 0.6123 7 6 2.0102 -1.2022 -0.0005 8 1 3.0526 -1.2241 0.2811 9 7 1.3731 -2.3604 -0.3581 10 6 1.8143 -3.6544 0.1802 11 6 2.0771 -4.6105 -0.9876 12 6 0.8279 -4.6890 -1.8683 13 6 1.0748 -5.6697 -3.0165 14 7 -0.1581 -5.8360 -3.7902 15 16 -0.1060 -6.5339 -5.2910 16 8 0.9095 -5.8145 -5.9770 17 8 -1.4545 -6.5040 -5.7384 18 6 0.4232 -8.2406 -4.9785 19 6 0.5098 -8.9986 -6.3047 20 1 -0.4310 -8.9318 -6.8509 21 6 0.9094 -10.4760 -6.0714 22 6 1.9087 -10.7803 -7.2044 23 8 2.0088 -9.5976 -8.0151 24 6 1.6876 -8.4748 -7.1653 25 6 0.5161 -3.3037 -2.4391 26 6 0.2356 -2.3329 -1.2878 27 1 -0.4850 0.8401 0.0004 28 1 1.0364 -4.0673 0.8225 29 1 2.7302 -3.5200 0.7556 30 1 2.3121 -5.6019 -0.6003 31 1 2.9160 -4.2422 -1.5782 32 1 -0.0162 -5.0341 -1.2713 33 1 1.3824 -6.6336 -2.6113 34 1 1.8604 -5.2804 -3.6642 35 1 -1.0049 -5.5374 -3.4233 36 1 1.4016 -8.2354 -4.4980 37 1 -0.2992 -8.7314 -4.3264 38 1 1.3879 -10.5929 -5.0990 39 1 0.0363 -11.1241 -6.1484 40 1 2.8838 -11.0244 -6.7828 41 1 1.5454 -11.6143 -7.8049 42 1 1.3754 -7.6178 -7.7622 43 1 2.5381 -8.2154 -6.5348 44 1 1.3696 -2.9472 -3.0157 45 1 -0.3598 -3.3650 -3.0848 46 1 -0.6709 -2.6380 -0.7651 47 1 0.1090 -1.3240 -1.6804 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610890496.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:01 Heat of formation + Delta-G solvation = -134.829060 kcal Electronic energy + Delta-G solvation = -27312.388047 eV Core-core repulsion = 23428.269027 eV Total energy + Delta-G solvation = -3884.119020 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.45570 -39.59031 -38.17112 -37.02788 -36.61892 -34.86968 -34.36917 -32.11715 -31.46831 -30.88428 -28.06099 -27.77371 -25.52344 -23.77252 -23.66798 -22.64001 -21.88349 -20.81382 -20.17450 -18.87076 -18.45260 -17.96149 -17.35905 -17.08445 -16.82394 -16.44069 -16.28141 -15.79084 -15.68829 -15.35531 -15.27628 -14.95409 -14.76165 -14.20446 -14.06405 -13.83697 -13.67111 -13.45854 -13.32608 -13.27301 -13.20209 -13.07420 -12.97757 -12.72161 -12.56975 -12.46294 -12.25611 -12.18368 -11.96020 -11.79567 -11.72768 -11.53313 -11.45221 -11.12596 -11.05421 -10.71068 -10.53804 -10.26304 -8.65976 -7.87032 -5.31509 -0.74550 1.44804 1.47185 1.55485 1.76774 2.51037 2.72787 2.91579 3.17961 3.27150 3.34456 3.59608 3.68589 3.74428 3.88762 4.02915 4.04826 4.10910 4.15554 4.26246 4.36217 4.49168 4.58991 4.60384 4.66249 4.70294 4.74546 4.79436 4.81836 4.85928 4.96868 4.99865 5.02808 5.11986 5.13474 5.26844 5.36002 5.39628 5.47588 5.58545 5.68498 5.81553 5.82543 6.08574 6.40454 7.16210 7.89828 8.39895 9.18837 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.025634 B = 0.002399 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.056826 B =11668.473529 C =11824.975803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.055 4.055 3 Si 0.964 3.036 4 H -0.289 1.289 5 H -0.295 1.295 6 H -0.266 1.266 7 C -0.259 4.259 8 H 0.067 0.933 9 N -0.613 5.613 10 C 0.137 3.863 11 C -0.116 4.116 12 C -0.079 4.079 13 C 0.120 3.880 14 N -1.116 6.116 15 S 2.606 3.394 16 O -0.990 6.990 17 O -0.999 6.999 18 C -0.595 4.595 19 C -0.122 4.122 20 H 0.097 0.903 21 C -0.136 4.136 22 C 0.032 3.968 23 O -0.401 6.401 24 C 0.025 3.975 25 C -0.126 4.126 26 C 0.175 3.825 27 H 0.248 0.752 28 H 0.016 0.984 29 H 0.052 0.948 30 H 0.098 0.902 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.108 0.892 34 H 0.071 0.929 35 H 0.420 0.580 36 H 0.166 0.834 37 H 0.173 0.827 38 H 0.104 0.896 39 H 0.098 0.902 40 H 0.072 0.928 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.043 0.957 45 H 0.059 0.941 46 H -0.003 1.003 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.214 -26.204 -9.415 27.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.250 4.250 3 Si 0.792 3.208 4 H -0.217 1.217 5 H -0.222 1.222 6 H -0.190 1.190 7 C -0.389 4.389 8 H 0.084 0.916 9 N -0.337 5.337 10 C 0.012 3.988 11 C -0.156 4.156 12 C -0.099 4.099 13 C -0.005 4.005 14 N -0.876 5.876 15 S 2.703 3.297 16 O -0.980 6.980 17 O -0.989 6.989 18 C -0.728 4.728 19 C -0.142 4.142 20 H 0.116 0.884 21 C -0.175 4.175 22 C -0.044 4.044 23 O -0.320 6.320 24 C -0.052 4.052 25 C -0.165 4.165 26 C 0.049 3.951 27 H 0.057 0.943 28 H 0.034 0.966 29 H 0.071 0.929 30 H 0.116 0.884 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.126 0.874 34 H 0.089 0.911 35 H 0.256 0.744 36 H 0.184 0.816 37 H 0.191 0.809 38 H 0.123 0.877 39 H 0.117 0.883 40 H 0.090 0.910 41 H 0.114 0.886 42 H 0.106 0.894 43 H 0.102 0.898 44 H 0.061 0.939 45 H 0.078 0.922 46 H 0.015 0.985 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.158 -25.658 -10.499 27.807 hybrid contribution -0.251 1.354 0.829 1.607 sum 1.908 -24.305 -9.669 26.227 Atomic orbital electron populations 1.70187 1.06669 1.25673 1.55698 1.25793 0.96039 1.01537 1.01633 0.85299 0.78381 0.79835 0.77246 1.21654 1.22201 1.19021 1.19539 0.93005 0.86323 1.40080 0.91573 1.44356 1.36494 1.02500 1.50326 1.21109 0.97227 0.85840 0.94613 1.21910 0.96787 1.00062 0.96838 1.21173 0.99178 0.93698 0.95857 1.21547 0.85183 1.00670 0.93132 1.55367 1.16421 1.77633 1.38213 1.04861 0.73301 0.78481 0.73058 1.93577 1.61332 1.70495 1.72580 1.93561 1.37048 1.88050 1.80245 1.30415 1.16081 1.20058 1.06229 1.22567 1.00526 0.97789 0.93368 0.88430 1.23020 1.00649 0.93259 1.00526 1.23469 0.99780 0.88310 0.92864 1.88884 1.91186 1.16276 1.35703 1.24074 0.97132 0.90230 0.93759 1.22053 1.00346 0.96378 0.97709 1.20578 0.87949 0.97500 0.89078 0.94273 0.96621 0.92917 0.88377 0.92561 0.90339 0.87444 0.91078 0.74418 0.81579 0.80948 0.87731 0.88332 0.90969 0.88562 0.89429 0.89817 0.93851 0.92204 0.98503 0.93764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.44 11.22 21.65 0.24 -56.19 16 2 C -0.05 -3.12 4.90 84.86 0.42 -2.70 16 3 Si 0.96 45.72 29.59 68.60 2.03 47.75 16 4 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 5 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 7 C -0.26 -14.34 9.58 84.03 0.81 -13.54 16 8 H 0.07 3.56 7.89 -2.91 -0.02 3.54 16 9 N -0.61 -30.49 2.99 -699.08 -2.09 -32.58 16 10 C 0.14 5.29 6.51 86.36 0.56 5.85 16 11 C -0.12 -3.22 5.36 30.67 0.16 -3.06 16 12 C -0.08 -2.10 2.18 -10.76 -0.02 -2.13 16 13 C 0.12 2.22 5.52 86.38 0.48 2.69 16 14 N -1.12 -20.63 5.39 -187.49 -1.01 -21.65 16 15 S 2.61 50.19 5.29 -56.49 -0.30 49.89 16 16 O -0.99 -26.54 16.36 -127.65 -2.09 -28.63 16 17 O -1.00 -26.66 18.08 -127.65 -2.31 -28.97 16 18 C -0.60 -4.98 5.45 71.98 0.39 -4.59 16 19 C -0.12 -1.43 3.12 -9.49 -0.03 -1.46 16 20 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 21 C -0.14 -0.96 6.60 31.59 0.21 -0.75 16 22 C 0.03 0.34 7.70 72.36 0.56 0.90 16 23 O -0.40 -7.63 11.52 -148.98 -1.72 -9.34 16 24 C 0.02 0.41 6.24 72.66 0.45 0.87 16 25 C -0.13 -4.60 5.26 30.67 0.16 -4.44 16 26 C 0.17 8.45 5.31 86.36 0.46 8.91 16 27 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 28 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.05 2.00 7.94 -2.39 -0.02 1.98 16 30 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.07 1.47 7.69 -2.39 -0.02 1.45 16 35 H 0.42 7.78 8.33 -96.75 -0.81 6.97 16 36 H 0.17 0.52 8.05 -2.39 -0.02 0.50 16 37 H 0.17 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.10 0.33 7.86 -2.39 -0.02 0.31 16 39 H 0.10 0.45 8.14 -2.38 -0.02 0.43 16 40 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 41 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.09 1.70 7.72 -2.38 -0.02 1.68 16 43 H 0.08 1.20 7.98 -2.39 -0.02 1.18 16 44 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.06 2.03 7.50 -2.39 -0.02 2.01 16 46 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 47 H 0.04 2.49 6.06 -2.39 -0.01 2.47 16 Total: -1.00 -80.35 378.53 -2.50 -82.85 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: 0.14 Total: 10.32 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: 4.60 Total: -13.44 kcal Atomic # 7 Polarization: -107.56 SS G_CDS: -2.86 Total: -110.42 kcal Atomic # 8 Polarization: -60.83 SS G_CDS: -6.11 Total: -66.94 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Atomic # 16 Polarization: 50.19 SS G_CDS: -0.30 Total: 49.89 kcal Total: -80.35 -2.50 -82.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610890496.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.980 kcal (2) G-P(sol) polarization free energy of solvation -80.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds