Wall clock time and date at job start Tue Mar 31 2020 16:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42893 * 113.99798 * 2 1 4 4 C 1.53007 * 109.46968 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46902 * 65.00507 * 4 3 2 6 6 C 1.46497 * 119.99480 * 269.99669 * 5 4 3 7 7 C 1.50699 * 109.47337 * 269.99981 * 6 5 4 8 8 H 1.07997 * 120.00051 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99955 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99542 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 120.00311 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.46943 * 89.99631 * 11 9 7 13 13 H 1.48497 * 109.46947 * 210.00163 * 11 9 7 14 14 H 1.48499 * 109.46573 * 329.99858 * 11 9 7 15 15 C 1.34769 * 120.00259 * 89.99848 * 5 4 3 16 16 O 1.21588 * 120.00302 * 359.97438 * 15 5 4 17 17 N 1.34782 * 120.00131 * 180.02562 * 15 5 4 18 18 C 1.39923 * 120.00100 * 184.41252 * 17 15 5 19 19 C 1.36256 * 119.17106 * 144.64293 * 18 17 15 20 20 C 1.41073 * 119.55349 * 180.02562 * 19 18 17 21 21 N 1.32095 * 134.61658 * 179.97438 * 20 19 18 22 22 N 1.39949 * 108.94844 * 179.97438 * 21 20 19 23 23 H 0.97005 * 125.02076 * 179.97438 * 22 21 20 24 24 C 1.33991 * 109.96284 * 0.27237 * 22 21 20 25 25 C 1.38242 * 107.91281 * 359.57037 * 24 22 21 26 26 C 1.41185 * 134.71405 * 180.12460 * 25 24 22 27 27 C 1.50702 * 120.18285 * 0.33545 * 26 25 24 28 28 C 1.35511 * 119.63476 * 180.33212 * 26 25 24 29 29 H 1.09004 * 109.47113 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47119 * 299.99613 * 1 2 3 31 31 H 1.08994 * 109.46991 * 59.99819 * 1 2 3 32 32 H 1.09000 * 109.47282 * 60.00138 * 3 2 1 33 33 H 1.08999 * 109.47779 * 300.00012 * 3 2 1 34 34 H 1.08996 * 109.47254 * 304.99695 * 4 3 2 35 35 H 1.08999 * 109.46758 * 184.99719 * 4 3 2 36 36 H 1.09003 * 109.47096 * 30.00371 * 6 5 4 37 37 H 1.09000 * 109.47009 * 150.00064 * 6 5 4 38 38 H 0.96999 * 119.99674 * 180.02562 * 10 9 7 39 39 H 0.97005 * 119.99275 * 4.40864 * 17 15 5 40 40 H 1.08001 * 120.21970 * 359.97438 * 19 18 17 41 41 H 1.07998 * 126.04406 * 179.72957 * 24 22 21 42 42 H 1.08993 * 109.47348 * 270.00224 * 27 26 25 43 43 H 1.09010 * 109.46922 * 30.00151 * 27 26 25 44 44 H 1.08999 * 109.47330 * 149.99815 * 27 26 25 45 45 H 1.08003 * 119.16886 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.1063 -0.8925 -1.3403 7 6 5.5018 -1.2981 -0.9413 8 1 6.2201 -0.5462 -0.6498 9 6 5.8614 -2.6291 -0.9483 10 7 7.0791 -2.9831 -0.5996 11 14 4.6191 -3.9297 -1.4532 12 1 4.7059 -4.1548 -2.9184 13 1 4.9127 -5.1982 -0.7391 14 1 3.2512 -3.4697 -1.1032 15 6 4.2633 1.3330 -2.3200 16 8 4.1553 2.5418 -2.2459 17 7 4.6687 0.7620 -3.4716 18 6 5.0547 1.5632 -4.5518 19 6 6.0694 1.1452 -5.3595 20 6 6.4655 1.9470 -6.4506 21 7 7.3815 1.8399 -7.3964 22 7 7.3126 2.9655 -8.2252 23 1 7.8813 3.1259 -8.9945 24 6 6.3495 3.7919 -7.7954 25 6 5.7627 3.2186 -6.6826 26 6 4.7194 3.5905 -5.8072 27 6 3.9794 4.8864 -6.0176 28 6 4.3869 2.7758 -4.7767 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6886 1.8463 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.8508 0.5686 0.8427 35 1 3.9784 2.1765 0.0902 36 1 3.3858 -1.3631 -0.6714 37 1 3.9139 -1.2122 -2.3645 38 1 7.3322 -3.9194 -0.6049 39 1 4.6929 -0.2045 -3.5514 40 1 6.5675 0.2069 -5.1652 41 1 6.0778 4.7373 -8.2411 42 1 4.4786 5.6835 -5.4668 43 1 3.9689 5.1304 -7.0800 44 1 2.9555 4.7827 -5.6586 45 1 3.5873 3.0675 -4.1118 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611532958.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:32 Heat of formation + Delta-G solvation = 33.100594 kcal Electronic energy + Delta-G solvation = -28696.648632 eV Core-core repulsion = 24716.660388 eV Total energy + Delta-G solvation = -3979.988244 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.17771 -39.97364 -37.86427 -37.06642 -35.02463 -34.45135 -32.63081 -32.47559 -30.39887 -29.26813 -29.07277 -27.54109 -26.83706 -26.00873 -23.65518 -22.55213 -22.50269 -21.48449 -19.89755 -19.08336 -18.37051 -17.30903 -17.06412 -16.92118 -16.10838 -15.98767 -15.64865 -15.12131 -14.89355 -14.67697 -14.49404 -14.25604 -13.88482 -13.67357 -13.48444 -13.25417 -13.03018 -12.57949 -12.50232 -12.23300 -12.07574 -11.93696 -11.69118 -11.59064 -11.55778 -11.34635 -10.99789 -10.83716 -10.54720 -10.22101 -10.18909 -9.96504 -9.69995 -9.57270 -9.47477 -9.31377 -8.67343 -8.01463 -7.65707 -7.26698 -6.16289 -4.18190 0.77525 2.03309 2.57370 2.74774 3.21321 3.23874 3.32859 3.34420 3.68077 4.06298 4.18513 4.32108 4.42989 4.49651 4.73762 5.10174 5.14739 5.27470 5.31682 5.35466 5.41035 5.57689 5.58815 5.60725 5.65452 5.65910 5.72368 5.75545 5.80765 5.94389 6.04182 6.28157 6.34032 6.45589 6.57656 6.63300 6.77638 6.81814 6.88258 7.13585 7.21564 7.36118 7.38659 7.49352 7.66937 7.74769 8.30476 8.56850 8.90322 9.14823 9.43142 10.96278 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010672 B = 0.003961 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.097642 B = 7066.902146 C = 9012.559185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.380 6.380 3 C 0.046 3.954 4 C 0.140 3.860 5 N -0.596 5.596 6 C 0.213 3.787 7 C -0.543 4.543 8 H 0.078 0.922 9 C 0.077 3.923 10 N -0.890 5.890 11 Si 0.867 3.133 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.260 1.260 15 C 0.712 3.288 16 O -0.601 6.601 17 N -0.681 5.681 18 C 0.237 3.763 19 C -0.167 4.167 20 C 0.134 3.866 21 N -0.315 5.315 22 N -0.436 5.436 23 H 0.439 0.561 24 C 0.076 3.924 25 C -0.209 4.209 26 C -0.015 4.015 27 C -0.109 4.109 28 C -0.140 4.140 29 H 0.081 0.919 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.052 0.948 37 H 0.016 0.984 38 H 0.266 0.734 39 H 0.417 0.583 40 H 0.133 0.867 41 H 0.182 0.818 42 H 0.071 0.929 43 H 0.061 0.939 44 H 0.068 0.932 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.182 13.004 -10.577 19.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.298 6.298 3 C -0.032 4.032 4 C 0.015 3.985 5 N -0.328 5.328 6 C 0.091 3.909 7 C -0.582 4.582 8 H 0.096 0.904 9 C -0.126 4.126 10 N -0.527 5.527 11 Si 0.693 3.307 12 H -0.199 1.199 13 H -0.209 1.209 14 H -0.184 1.184 15 C 0.414 3.586 16 O -0.482 6.482 17 N -0.329 5.329 18 C 0.136 3.864 19 C -0.192 4.192 20 C -0.020 4.020 21 N -0.144 5.144 22 N -0.136 5.136 23 H 0.283 0.717 24 C -0.080 4.080 25 C -0.219 4.219 26 C -0.018 4.018 27 C -0.166 4.166 28 C -0.161 4.161 29 H 0.100 0.900 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.070 0.930 37 H 0.034 0.966 38 H 0.076 0.924 39 H 0.256 0.744 40 H 0.151 0.849 41 H 0.199 0.801 42 H 0.090 0.910 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -8.090 12.707 -10.850 18.564 hybrid contribution -0.878 -0.648 -0.332 1.141 sum -8.968 12.058 -11.182 18.731 Atomic orbital electron populations 1.22680 0.82137 1.02290 0.99339 1.88016 1.18713 1.27838 1.95258 1.23107 0.95390 0.84727 0.99994 1.21275 0.90666 0.99805 0.86707 1.47015 1.67641 1.08240 1.09921 1.19782 0.98515 0.75744 0.96825 1.21436 0.95940 0.93755 1.47021 0.90364 1.24868 0.95034 0.98270 0.94463 1.69899 1.18139 1.17471 1.47225 0.86974 0.82654 0.81811 0.79211 1.19945 1.20934 1.18403 1.15755 0.77655 0.84887 0.80259 1.90805 1.61463 1.12290 1.83659 1.42893 1.68315 1.10572 1.11162 1.16976 0.91740 0.91163 0.86555 1.19385 0.99595 1.02865 0.97396 1.20477 0.93235 0.94042 0.94243 1.77710 1.24622 1.05032 1.07022 1.46227 1.27331 1.15361 1.24693 0.71715 1.22527 0.92103 0.96797 0.96578 1.19488 1.04000 0.98000 1.00432 1.18822 0.93922 0.95908 0.93191 1.20739 0.99920 0.94337 1.01591 1.20700 1.02819 0.94338 0.98197 0.90040 0.94557 0.94584 0.92960 0.93179 0.89127 0.88942 0.93018 0.96601 0.92420 0.74414 0.84875 0.80101 0.91033 0.92019 0.91326 0.83854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.38 -6.24 9.53 -35.23 -0.34 -6.57 16 3 C 0.05 0.69 6.28 37.16 0.23 0.93 16 4 C 0.14 2.47 5.81 -4.04 -0.02 2.44 16 5 N -0.60 -12.21 2.42 -180.80 -0.44 -12.64 16 6 C 0.21 4.76 3.85 -5.20 -0.02 4.74 16 7 C -0.54 -14.42 9.94 -34.44 -0.34 -14.76 16 8 H 0.08 2.35 8.06 -52.49 -0.42 1.92 16 9 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 10 N -0.89 -26.20 13.96 55.43 0.77 -25.43 16 11 Si 0.87 20.07 27.47 -169.99 -4.67 15.40 16 12 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 H -0.26 -5.76 6.54 56.52 0.37 -5.39 16 15 C 0.71 14.75 8.10 -86.92 -0.70 14.04 16 16 O -0.60 -12.91 13.29 5.29 0.07 -12.84 16 17 N -0.68 -13.21 5.18 -14.51 -0.08 -13.28 16 18 C 0.24 4.32 6.23 -84.12 -0.52 3.80 16 19 C -0.17 -3.00 9.95 -39.22 -0.39 -3.39 16 20 C 0.13 2.27 7.49 -83.07 -0.62 1.65 16 21 N -0.31 -4.98 12.70 33.24 0.42 -4.56 16 22 N -0.44 -4.65 7.18 30.84 0.22 -4.43 16 23 H 0.44 2.80 8.96 -182.71 -1.64 1.16 16 24 C 0.08 0.77 11.78 -16.61 -0.20 0.57 16 25 C -0.21 -2.96 6.12 -105.17 -0.64 -3.61 16 26 C -0.02 -0.22 5.89 -104.48 -0.62 -0.83 16 27 C -0.11 -1.10 9.95 36.01 0.36 -0.74 16 28 C -0.14 -2.35 8.16 -39.80 -0.32 -2.67 16 29 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.09 1.63 8.07 -51.93 -0.42 1.21 16 35 H 0.09 1.58 7.42 -51.93 -0.39 1.19 16 36 H 0.05 1.19 6.18 -51.93 -0.32 0.87 16 37 H 0.02 0.35 5.73 -51.93 -0.30 0.05 16 38 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.42 7.98 6.50 -40.82 -0.27 7.71 16 40 H 0.13 2.40 8.06 -52.49 -0.42 1.98 16 41 H 0.18 0.95 8.06 -52.49 -0.42 0.52 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.47 7.93 -51.92 -0.41 0.06 16 44 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 45 H 0.14 2.51 6.13 -52.48 -0.32 2.19 16 LS Contribution 374.87 15.07 5.65 5.65 Total: -1.00 -34.42 374.87 -8.63 -43.05 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -7.45 Total: 9.98 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: -2.80 Total: 5.69 kcal Atomic # 7 Polarization: -61.25 SS G_CDS: 0.90 Total: -60.34 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.27 Total: -19.41 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -4.67 Total: 15.40 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.42 -8.63 -43.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611532958.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.147 kcal (2) G-P(sol) polarization free energy of solvation -34.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds