Wall clock time and date at job start Tue Mar 31 2020 16:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42893 * 113.99798 * 2 1 4 4 C 1.53007 * 109.46968 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46902 * 65.00507 * 4 3 2 6 6 C 1.46497 * 119.99480 * 269.99669 * 5 4 3 7 7 C 1.50699 * 109.47337 * 269.99981 * 6 5 4 8 8 H 1.07997 * 120.00051 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99955 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99542 * 180.02562 * 9 7 6 11 11 Si 1.86803 * 120.00311 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.46943 * 89.99631 * 11 9 7 13 13 H 1.48497 * 109.46947 * 210.00163 * 11 9 7 14 14 H 1.48499 * 109.46573 * 329.99858 * 11 9 7 15 15 C 1.34769 * 120.00259 * 89.99848 * 5 4 3 16 16 O 1.21588 * 120.00302 * 359.97438 * 15 5 4 17 17 N 1.34782 * 120.00131 * 180.02562 * 15 5 4 18 18 C 1.39923 * 120.00100 * 184.41252 * 17 15 5 19 19 C 1.36256 * 119.17106 * 144.64293 * 18 17 15 20 20 C 1.41073 * 119.55349 * 180.02562 * 19 18 17 21 21 N 1.32095 * 134.61658 * 179.97438 * 20 19 18 22 22 N 1.39949 * 108.94844 * 179.97438 * 21 20 19 23 23 H 0.97005 * 125.02076 * 179.97438 * 22 21 20 24 24 C 1.33991 * 109.96284 * 0.27237 * 22 21 20 25 25 C 1.38242 * 107.91281 * 359.57037 * 24 22 21 26 26 C 1.41185 * 134.71405 * 180.12460 * 25 24 22 27 27 C 1.50702 * 120.18285 * 0.33545 * 26 25 24 28 28 C 1.35511 * 119.63476 * 180.33212 * 26 25 24 29 29 H 1.09004 * 109.47113 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47119 * 299.99613 * 1 2 3 31 31 H 1.08994 * 109.46991 * 59.99819 * 1 2 3 32 32 H 1.09000 * 109.47282 * 60.00138 * 3 2 1 33 33 H 1.08999 * 109.47779 * 300.00012 * 3 2 1 34 34 H 1.08996 * 109.47254 * 304.99695 * 4 3 2 35 35 H 1.08999 * 109.46758 * 184.99719 * 4 3 2 36 36 H 1.09003 * 109.47096 * 30.00371 * 6 5 4 37 37 H 1.09000 * 109.47009 * 150.00064 * 6 5 4 38 38 H 0.96999 * 119.99674 * 180.02562 * 10 9 7 39 39 H 0.97005 * 119.99275 * 4.40864 * 17 15 5 40 40 H 1.08001 * 120.21970 * 359.97438 * 19 18 17 41 41 H 1.07998 * 126.04406 * 179.72957 * 24 22 21 42 42 H 1.08993 * 109.47348 * 270.00224 * 27 26 25 43 43 H 1.09010 * 109.46922 * 30.00151 * 27 26 25 44 44 H 1.08999 * 109.47330 * 149.99815 * 27 26 25 45 45 H 1.08003 * 119.16886 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.1063 -0.8925 -1.3403 7 6 5.5018 -1.2981 -0.9413 8 1 6.2201 -0.5462 -0.6498 9 6 5.8614 -2.6291 -0.9483 10 7 7.0791 -2.9831 -0.5996 11 14 4.6191 -3.9297 -1.4532 12 1 4.7059 -4.1548 -2.9184 13 1 4.9127 -5.1982 -0.7391 14 1 3.2512 -3.4697 -1.1032 15 6 4.2633 1.3330 -2.3200 16 8 4.1553 2.5418 -2.2459 17 7 4.6687 0.7620 -3.4716 18 6 5.0547 1.5632 -4.5518 19 6 6.0694 1.1452 -5.3595 20 6 6.4655 1.9470 -6.4506 21 7 7.3815 1.8399 -7.3964 22 7 7.3126 2.9655 -8.2252 23 1 7.8813 3.1259 -8.9945 24 6 6.3495 3.7919 -7.7954 25 6 5.7627 3.2186 -6.6826 26 6 4.7194 3.5905 -5.8072 27 6 3.9794 4.8864 -6.0176 28 6 4.3869 2.7758 -4.7767 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6886 1.8463 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.8508 0.5686 0.8427 35 1 3.9784 2.1765 0.0902 36 1 3.3858 -1.3631 -0.6714 37 1 3.9139 -1.2122 -2.3645 38 1 7.3322 -3.9194 -0.6049 39 1 4.6929 -0.2045 -3.5514 40 1 6.5675 0.2069 -5.1652 41 1 6.0778 4.7373 -8.2411 42 1 4.4786 5.6835 -5.4668 43 1 3.9689 5.1304 -7.0800 44 1 2.9555 4.7827 -5.6586 45 1 3.5873 3.0675 -4.1118 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611532958.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:30 Heat of formation + Delta-G solvation = 8.509101 kcal Electronic energy + Delta-G solvation = -28697.714999 eV Core-core repulsion = 24716.660388 eV Total energy + Delta-G solvation = -3981.054611 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.29006 -41.46489 -39.09426 -38.28986 -36.67701 -35.75878 -34.58107 -33.72573 -31.73193 -30.66298 -30.14106 -29.21740 -27.86788 -27.09482 -24.97103 -24.37440 -23.67012 -22.76230 -21.13947 -20.45336 -19.52096 -19.09895 -18.71985 -18.23163 -17.42180 -17.24640 -16.87301 -16.61234 -16.09497 -16.08065 -15.81875 -15.60335 -15.23523 -15.05044 -14.91704 -14.43478 -14.12297 -14.10234 -13.89298 -13.58264 -13.47299 -13.15074 -12.96672 -12.79534 -12.74066 -12.68476 -12.53464 -12.39637 -12.03979 -11.91813 -11.69822 -11.29960 -11.13031 -11.05098 -10.81559 -10.77060 -10.54553 -9.53005 -9.04458 -8.47349 -8.30212 -6.37635 -0.31220 0.83288 1.38744 1.40755 1.48232 1.52075 1.64119 2.00470 2.17333 2.34269 2.89048 2.93860 2.95968 3.04983 3.40796 3.80629 4.10920 4.17611 4.22615 4.29741 4.37870 4.42719 4.44931 4.56844 4.58089 4.60147 4.62857 4.68125 4.84598 4.86943 4.94169 4.94798 5.00813 5.03540 5.13786 5.32215 5.41673 5.44529 5.54422 5.68001 5.73419 6.03772 6.08863 6.22964 6.33746 6.37629 6.65904 6.66888 6.90266 7.27942 7.54612 8.86218 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010672 B = 0.003961 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.097642 B = 7066.902146 C = 9012.559185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.411 6.411 3 C 0.057 3.943 4 C 0.132 3.868 5 N -0.601 5.601 6 C 0.228 3.772 7 C -0.541 4.541 8 H 0.028 0.972 9 C 0.021 3.979 10 N -0.942 5.942 11 Si 0.939 3.061 12 H -0.263 1.263 13 H -0.283 1.283 14 H -0.239 1.239 15 C 0.707 3.293 16 O -0.611 6.611 17 N -0.684 5.684 18 C 0.226 3.774 19 C -0.194 4.194 20 C 0.110 3.890 21 N -0.361 5.361 22 N -0.416 5.416 23 H 0.460 0.540 24 C 0.130 3.870 25 C -0.244 4.244 26 C 0.017 3.983 27 C -0.109 4.109 28 C -0.184 4.184 29 H 0.090 0.910 30 H 0.056 0.944 31 H 0.042 0.958 32 H 0.084 0.916 33 H 0.045 0.955 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.056 0.944 37 H 0.029 0.971 38 H 0.268 0.732 39 H 0.413 0.587 40 H 0.113 0.887 41 H 0.247 0.753 42 H 0.083 0.917 43 H 0.098 0.902 44 H 0.070 0.930 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.366 15.289 -13.163 23.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.330 6.330 3 C -0.020 4.020 4 C 0.009 3.991 5 N -0.334 5.334 6 C 0.105 3.895 7 C -0.580 4.580 8 H 0.046 0.954 9 C -0.178 4.178 10 N -0.581 5.581 11 Si 0.761 3.239 12 H -0.188 1.188 13 H -0.209 1.209 14 H -0.162 1.162 15 C 0.410 3.590 16 O -0.493 6.493 17 N -0.332 5.332 18 C 0.126 3.874 19 C -0.220 4.220 20 C -0.043 4.043 21 N -0.191 5.191 22 N -0.117 5.117 23 H 0.308 0.692 24 C -0.029 4.029 25 C -0.254 4.254 26 C 0.014 3.986 27 C -0.166 4.166 28 C -0.204 4.204 29 H 0.109 0.891 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.102 0.898 33 H 0.064 0.936 34 H 0.100 0.900 35 H 0.111 0.889 36 H 0.073 0.927 37 H 0.047 0.953 38 H 0.077 0.923 39 H 0.251 0.749 40 H 0.131 0.869 41 H 0.263 0.737 42 H 0.102 0.898 43 H 0.117 0.883 44 H 0.089 0.911 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -10.269 15.012 -13.462 22.628 hybrid contribution -0.072 -1.143 0.323 1.190 sum -10.341 13.869 -13.138 21.723 Atomic orbital electron populations 1.22881 0.79924 1.03401 1.00685 1.87950 1.21185 1.28358 1.95528 1.22944 0.93074 0.84764 1.01230 1.21452 0.93042 0.99353 0.85227 1.47074 1.67979 1.07518 1.10856 1.19484 0.95633 0.77103 0.97238 1.21556 0.97098 0.92883 1.46437 0.95363 1.25774 0.97000 1.00764 0.94309 1.70062 1.20675 1.18126 1.49238 0.85840 0.80598 0.78220 0.79229 1.18772 1.20898 1.16215 1.15877 0.77711 0.84894 0.80553 1.90777 1.62007 1.12545 1.83949 1.42906 1.68266 1.10522 1.11460 1.17212 0.92215 0.91850 0.86111 1.19299 1.00593 1.02978 0.99129 1.20533 0.94233 0.95327 0.94221 1.77647 1.25493 1.07753 1.08194 1.46314 1.27200 1.13964 1.24256 0.69174 1.23460 0.88713 0.97183 0.93513 1.19837 1.05119 0.97784 1.02679 1.19279 0.92428 0.96157 0.90774 1.20884 0.99476 0.91958 1.04235 1.20585 1.04195 0.95155 1.00506 0.89135 0.92502 0.93889 0.89780 0.93641 0.90001 0.88853 0.92652 0.95319 0.92314 0.74885 0.86941 0.73668 0.89819 0.88327 0.91073 0.85178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 11.01 113.37 1.25 1.85 16 2 O -0.41 -13.02 9.53 -148.98 -1.42 -14.44 16 3 C 0.06 1.70 6.28 71.98 0.45 2.15 16 4 C 0.13 4.80 5.81 86.38 0.50 5.30 16 5 N -0.60 -25.60 2.42 -844.20 -2.04 -27.65 16 6 C 0.23 10.44 3.85 85.63 0.33 10.77 16 7 C -0.54 -30.22 9.94 25.60 0.25 -29.96 16 8 H 0.03 1.82 8.06 -2.91 -0.02 1.79 16 9 C 0.02 1.16 5.47 84.65 0.46 1.62 16 10 N -0.94 -57.96 13.96 21.45 0.30 -57.66 16 11 Si 0.94 41.97 27.47 68.60 1.88 43.86 16 12 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 13 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 14 H -0.24 -9.84 6.54 99.48 0.65 -9.19 16 15 C 0.71 30.75 8.10 179.05 1.45 32.20 16 16 O -0.61 -27.28 13.29 -3.99 -0.05 -27.33 16 17 N -0.68 -28.35 5.18 -318.06 -1.65 -30.00 16 18 C 0.23 8.80 6.23 37.88 0.24 9.04 16 19 C -0.19 -7.55 9.95 22.50 0.22 -7.33 16 20 C 0.11 3.78 7.49 42.14 0.32 4.09 16 21 N -0.36 -11.26 12.70 -48.73 -0.62 -11.88 16 22 N -0.42 -7.41 7.18 -56.35 -0.40 -7.81 16 23 H 0.46 3.95 8.96 -213.41 -1.91 2.04 16 24 C 0.13 1.94 11.78 84.36 0.99 2.93 16 25 C -0.24 -6.35 6.12 -20.22 -0.12 -6.48 16 26 C 0.02 0.44 5.89 -19.77 -0.12 0.33 16 27 C -0.11 -1.77 9.95 71.24 0.71 -1.06 16 28 C -0.18 -6.32 8.16 22.13 0.18 -6.14 16 29 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 30 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.05 1.38 8.14 -2.39 -0.02 1.37 16 34 H 0.08 3.06 8.07 -2.39 -0.02 3.04 16 35 H 0.09 3.30 7.42 -2.39 -0.02 3.29 16 36 H 0.06 2.53 6.18 -2.39 -0.01 2.52 16 37 H 0.03 1.26 5.73 -2.39 -0.01 1.25 16 38 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 39 H 0.41 17.00 6.50 -92.70 -0.60 16.39 16 40 H 0.11 4.59 8.06 -2.91 -0.02 4.56 16 41 H 0.25 0.42 8.06 -2.91 -0.02 0.40 16 42 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.10 0.89 7.93 -2.38 -0.02 0.87 16 44 H 0.07 1.16 8.08 -2.39 -0.02 1.14 16 45 H 0.13 4.74 6.13 -2.91 -0.02 4.72 16 Total: -1.00 -81.97 374.87 1.59 -80.39 By element: Atomic # 1 Polarization: 34.72 SS G_CDS: -1.53 Total: 33.19 kcal Atomic # 6 Polarization: 12.21 SS G_CDS: 7.12 Total: 19.33 kcal Atomic # 7 Polarization: -130.58 SS G_CDS: -4.41 Total: -134.99 kcal Atomic # 8 Polarization: -40.30 SS G_CDS: -1.47 Total: -41.77 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 1.88 Total: 43.86 kcal Total: -81.97 1.59 -80.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611532958.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.897 kcal (2) G-P(sol) polarization free energy of solvation -81.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds