Wall clock time and date at job start Tue Mar 31 2020 16:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.34074 * 126.95014 * 2 1 4 4 N 1.21234 * 113.42424 * 179.97438 * 3 2 1 5 5 C 1.30040 * 112.05922 * 359.97438 * 4 3 2 6 6 C 1.36960 * 126.95372 * 179.97438 * 2 1 3 7 7 C 1.45816 * 138.52885 * 359.97179 * 6 2 1 8 8 C 1.50708 * 120.10484 * 0.02562 * 7 6 2 9 9 N 1.29977 * 119.79610 * 180.27767 * 7 6 2 10 10 N 1.39292 * 123.49709 * 359.42013 * 9 7 6 11 11 C 1.46504 * 118.61256 * 180.32786 * 10 9 7 12 12 N 1.46900 * 109.46730 * 285.29909 * 11 10 9 13 13 C 1.46908 * 110.99425 * 205.00042 * 12 11 10 14 14 C 1.50693 * 109.47010 * 75.56237 * 13 12 11 15 15 H 1.07999 * 120.00250 * 355.63303 * 14 13 12 16 16 C 1.37883 * 120.00211 * 175.64030 * 14 13 12 17 17 N 1.31509 * 119.99314 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00250 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47109 * 90.00109 * 18 16 14 20 20 H 1.48497 * 109.47094 * 210.00221 * 18 16 14 21 21 H 1.48500 * 109.47206 * 330.00061 * 18 16 14 22 22 C 1.46902 * 111.00081 * 81.05268 * 12 11 10 23 23 C 1.52997 * 109.46827 * 195.84325 * 22 12 11 24 24 C 1.53006 * 117.49886 * 244.04815 * 23 22 12 25 25 C 1.52999 * 117.49978 * 175.38985 * 23 22 12 26 26 C 1.34983 * 122.77180 * 0.63666 * 10 9 7 27 27 O 1.21696 * 120.71870 * 179.71025 * 26 10 9 28 28 H 1.08998 * 109.47121 * 270.00303 * 1 2 3 29 29 H 1.09000 * 109.47476 * 30.00680 * 1 2 3 30 30 H 1.09000 * 109.47144 * 150.00861 * 1 2 3 31 31 H 1.08997 * 109.46632 * 89.99210 * 8 7 6 32 32 H 1.08995 * 109.47238 * 210.00000 * 8 7 6 33 33 H 1.09003 * 109.46828 * 329.99754 * 8 7 6 34 34 H 1.08998 * 109.46971 * 45.29735 * 11 10 9 35 35 H 1.09000 * 109.46828 * 165.30118 * 11 10 9 36 36 H 1.09000 * 109.46703 * 195.56006 * 13 12 11 37 37 H 1.09000 * 109.47183 * 315.55919 * 13 12 11 38 38 H 0.97010 * 119.99601 * 179.97438 * 17 16 14 39 39 H 1.08996 * 109.46663 * 315.83641 * 22 12 11 40 40 H 1.08995 * 109.47354 * 75.84004 * 22 12 11 41 41 H 1.09004 * 115.55058 * 29.71594 * 23 22 12 42 42 H 1.09001 * 117.49411 * 0.02562 * 24 23 22 43 43 H 1.09001 * 117.49659 * 145.01976 * 24 23 22 44 44 H 1.08994 * 117.50018 * 214.97913 * 25 23 22 45 45 H 1.09000 * 117.49833 * 0.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.3129 1.0715 0.0000 4 7 3.4916 0.7879 0.0005 5 6 3.6845 -0.4981 0.0015 6 6 2.3303 -1.0945 0.0005 7 6 2.2155 -2.5481 0.0016 8 6 0.8562 -3.1990 0.0021 9 7 3.2890 -3.2808 0.0072 10 7 4.5788 -2.7548 0.0006 11 6 5.7141 -3.6807 0.0006 12 7 5.8671 -4.2678 1.3385 13 6 7.2517 -4.7019 1.5675 14 6 8.1185 -3.4977 1.8312 15 1 7.6999 -2.5048 1.7594 16 6 9.4463 -3.6636 2.1640 17 7 9.9562 -4.8727 2.2508 18 14 10.5209 -2.1709 2.4902 19 1 10.4600 -1.8228 3.9325 20 1 11.9240 -2.4795 2.1143 21 1 10.0331 -1.0239 1.6830 22 6 4.9274 -5.3794 1.5362 23 6 4.8287 -5.7045 3.0280 24 6 5.3117 -7.0828 3.4842 25 6 3.8141 -6.7676 3.4538 26 6 4.8267 -1.4279 0.0003 27 8 5.9693 -1.0091 -0.0003 28 1 -0.3633 0.0001 1.0276 29 1 -0.3634 0.8899 -0.5139 30 1 -0.3633 -0.8901 -0.5137 31 1 0.5286 -3.3565 -1.0255 32 1 0.9128 -4.1582 0.5166 33 1 0.1441 -2.5528 0.5154 34 1 5.5362 -4.4736 -0.7259 35 1 6.6230 -3.1411 -0.2656 36 1 7.2854 -5.3694 2.4286 37 1 7.6184 -5.2275 0.6858 38 1 10.8905 -4.9894 2.4846 39 1 3.9444 -5.0953 1.1605 40 1 5.2833 -6.2566 0.9959 41 1 4.9917 -4.8650 3.7039 42 1 5.7001 -7.7577 2.7214 43 1 5.7921 -7.1501 4.4603 44 1 3.3099 -6.6277 4.4099 45 1 3.2172 -7.2357 2.6711 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728901599.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:09 Heat of formation + Delta-G solvation = 113.284891 kcal Electronic energy + Delta-G solvation = -29194.351615 eV Core-core repulsion = 25217.840423 eV Total energy + Delta-G solvation = -3976.511192 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.11929 -40.14365 -37.71717 -37.40275 -35.67705 -34.19668 -33.57640 -32.68785 -32.19722 -28.92729 -28.33217 -27.62805 -26.72736 -24.75309 -24.35267 -23.06383 -21.96204 -21.21286 -20.50315 -19.64701 -18.97021 -18.29161 -18.12486 -16.46446 -16.34550 -15.79790 -15.53756 -15.34372 -15.08638 -14.50114 -14.26871 -14.11779 -14.02215 -13.77086 -13.56324 -13.46248 -13.21332 -13.08480 -12.59016 -12.36361 -11.99648 -11.90921 -11.60753 -11.51240 -11.28432 -11.16783 -10.98341 -10.74465 -10.64620 -10.61898 -10.55128 -10.05162 -9.95450 -9.87100 -9.80034 -9.35043 -9.13828 -8.37544 -8.30756 -7.42283 -5.96681 -3.96936 0.56480 1.04597 2.09007 2.13706 2.57467 3.24585 3.30610 3.40037 3.45223 3.55610 3.77224 4.04611 4.21636 4.29054 4.51113 4.75475 4.84272 4.90633 4.94508 5.05828 5.17901 5.25957 5.27418 5.29510 5.36486 5.39211 5.44723 5.50528 5.56204 5.81317 5.89873 5.94370 5.97609 6.13634 6.16827 6.27409 6.30532 6.40844 6.48495 6.77991 7.16935 7.28447 7.64273 7.87853 7.93912 8.04543 8.13832 8.17220 8.52384 9.13486 9.68035 11.13519 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010606 B = 0.004393 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2639.504060 B = 6372.111524 C = 8465.630898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.018 3.982 3 O 0.119 5.881 4 N -0.284 5.284 5 C -0.019 4.019 6 C -0.203 4.203 7 C 0.162 3.838 8 C -0.089 4.089 9 N -0.223 5.223 10 N -0.409 5.409 11 C 0.300 3.700 12 N -0.544 5.544 13 C 0.199 3.801 14 C -0.507 4.507 15 H 0.066 0.934 16 C 0.059 3.941 17 N -0.900 5.900 18 Si 0.893 3.107 19 H -0.281 1.281 20 H -0.288 1.288 21 H -0.271 1.271 22 C 0.082 3.918 23 C -0.128 4.128 24 C -0.178 4.178 25 C -0.187 4.187 26 C 0.572 3.428 27 O -0.479 6.479 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.058 0.942 35 H 0.127 0.873 36 H 0.046 0.954 37 H -0.008 1.008 38 H 0.260 0.740 39 H 0.080 0.920 40 H 0.027 0.973 41 H 0.108 0.892 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.221 2.242 -5.117 25.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.049 4.049 3 O 0.048 5.952 4 N 0.016 4.984 5 C -0.183 4.183 6 C -0.211 4.211 7 C -0.025 4.025 8 C -0.148 4.148 9 N -0.033 5.033 10 N -0.230 5.230 11 C 0.090 3.910 12 N -0.270 5.270 13 C 0.075 3.925 14 C -0.546 4.546 15 H 0.085 0.915 16 C -0.142 4.142 17 N -0.539 5.539 18 Si 0.721 3.279 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.196 1.196 22 C -0.046 4.046 23 C -0.147 4.147 24 C -0.215 4.215 25 C -0.225 4.225 26 C 0.357 3.643 27 O -0.347 6.347 28 H 0.115 0.885 29 H 0.109 0.891 30 H 0.118 0.882 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.101 0.899 34 H 0.076 0.924 35 H 0.145 0.855 36 H 0.064 0.936 37 H 0.010 0.990 38 H 0.070 0.930 39 H 0.099 0.901 40 H 0.045 0.955 41 H 0.126 0.874 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.105 0.895 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -23.074 2.894 -4.741 23.733 hybrid contribution 0.616 0.363 -0.122 0.725 sum -22.458 3.258 -4.863 23.208 Atomic orbital electron populations 1.20544 0.82480 1.05390 1.04861 1.24305 0.95802 0.84836 0.99938 1.84946 1.10801 1.33299 1.66182 1.73688 0.95071 1.15074 1.14587 1.24445 0.96260 0.90688 1.06884 1.21616 0.91884 0.95801 1.11818 1.22328 0.95143 0.86069 0.98957 1.20643 0.88747 1.01614 1.03772 1.74041 0.89546 1.27604 1.12083 1.49263 1.02994 1.04239 1.66548 1.22158 0.86210 0.90968 0.91677 1.61690 1.09023 1.30727 1.25578 1.19763 0.79920 0.96409 0.96395 1.21248 0.93777 0.93348 1.46183 0.91545 1.24915 0.97925 0.95831 0.95551 1.69958 1.14010 1.20779 1.49201 0.86557 0.79357 0.83399 0.78612 1.20761 1.21347 1.19552 1.21767 0.97127 0.92424 0.93291 1.22222 1.02220 0.92666 0.97584 1.22975 0.95888 0.99795 1.02833 1.22926 0.92470 1.04825 1.02274 1.17166 0.86740 0.81895 0.78532 1.90975 1.21422 1.76080 1.46252 0.88458 0.89057 0.88197 0.89590 0.89345 0.89933 0.92429 0.85495 0.93553 0.99031 0.93039 0.90142 0.95498 0.87437 0.89163 0.89234 0.89480 0.89403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.24 9.66 36.00 0.35 0.10 16 2 C 0.02 0.16 7.57 -34.77 -0.26 -0.10 16 3 O 0.12 1.46 11.09 17.00 0.19 1.65 16 4 N -0.28 -4.69 12.05 34.22 0.41 -4.28 16 5 C -0.02 -0.32 7.83 -80.96 -0.63 -0.96 16 6 C -0.20 -2.56 6.47 -103.34 -0.67 -3.23 16 7 C 0.16 1.90 7.10 -80.35 -0.57 1.33 16 8 C -0.09 -0.54 9.64 36.01 0.35 -0.19 16 9 N -0.22 -3.37 9.29 34.78 0.32 -3.05 16 10 N -0.41 -7.71 3.74 -64.37 -0.24 -7.95 16 11 C 0.30 6.13 5.50 -63.31 -0.35 5.78 16 12 N -0.54 -11.94 4.48 -239.98 -1.08 -13.01 16 13 C 0.20 5.18 4.54 -4.97 -0.02 5.16 16 14 C -0.51 -14.80 8.51 -34.44 -0.29 -15.09 16 15 H 0.07 2.04 7.81 -52.49 -0.41 1.63 16 16 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 17 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 18 Si 0.89 23.14 29.54 -169.99 -5.02 18.12 16 19 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 20 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 21 H -0.27 -7.16 7.11 56.52 0.40 -6.76 16 22 C 0.08 1.50 5.08 -3.82 -0.02 1.48 16 23 C -0.13 -2.24 4.97 -90.62 -0.45 -2.69 16 24 C -0.18 -2.85 9.98 -26.69 -0.27 -3.12 16 25 C -0.19 -2.57 10.25 -26.69 -0.27 -2.85 16 26 C 0.57 11.84 7.74 -12.49 -0.10 11.74 16 27 O -0.48 -11.80 16.47 5.19 0.09 -11.71 16 28 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.10 0.14 6.69 -51.93 -0.35 -0.20 16 31 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.29 6.40 -51.93 -0.33 -0.04 16 34 H 0.06 1.05 7.92 -51.93 -0.41 0.64 16 35 H 0.13 2.96 6.05 -51.93 -0.31 2.64 16 36 H 0.05 1.27 6.95 -51.93 -0.36 0.91 16 37 H -0.01 -0.22 8.00 -51.93 -0.42 -0.63 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.08 1.34 6.01 -51.93 -0.31 1.03 16 40 H 0.03 0.49 7.79 -51.93 -0.40 0.08 16 41 H 0.11 2.11 8.14 -51.93 -0.42 1.69 16 42 H 0.09 1.44 8.03 -51.93 -0.42 1.03 16 43 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 44 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 376.67 15.07 5.68 5.68 Total: -1.00 -36.14 376.67 -8.47 -44.60 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -6.24 Total: -2.68 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -3.31 Total: -1.01 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: 0.16 Total: -54.64 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.27 Total: -10.07 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -5.02 Total: 18.12 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.14 -8.47 -44.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728901599.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.888 kcal (2) G-P(sol) polarization free energy of solvation -36.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds