Wall clock time and date at job start Tue Mar 31 2020 16:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.34074 * 126.95014 * 2 1 4 4 N 1.21234 * 113.42424 * 179.97438 * 3 2 1 5 5 C 1.30040 * 112.05922 * 359.97438 * 4 3 2 6 6 C 1.36960 * 126.95372 * 179.97438 * 2 1 3 7 7 C 1.45816 * 138.52885 * 359.97179 * 6 2 1 8 8 C 1.50708 * 120.10484 * 0.02562 * 7 6 2 9 9 N 1.29977 * 119.79610 * 180.27767 * 7 6 2 10 10 N 1.39292 * 123.49709 * 359.42013 * 9 7 6 11 11 C 1.46504 * 118.61256 * 180.32786 * 10 9 7 12 12 N 1.46900 * 109.46730 * 285.29909 * 11 10 9 13 13 C 1.46908 * 110.99425 * 205.00042 * 12 11 10 14 14 C 1.50693 * 109.47010 * 75.56237 * 13 12 11 15 15 H 1.07999 * 120.00250 * 355.63303 * 14 13 12 16 16 C 1.37883 * 120.00211 * 175.64030 * 14 13 12 17 17 N 1.31509 * 119.99314 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00250 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47109 * 90.00109 * 18 16 14 20 20 H 1.48497 * 109.47094 * 210.00221 * 18 16 14 21 21 H 1.48500 * 109.47206 * 330.00061 * 18 16 14 22 22 C 1.46902 * 111.00081 * 81.05268 * 12 11 10 23 23 C 1.52997 * 109.46827 * 195.84325 * 22 12 11 24 24 C 1.53006 * 117.49886 * 244.04815 * 23 22 12 25 25 C 1.52999 * 117.49978 * 175.38985 * 23 22 12 26 26 C 1.34983 * 122.77180 * 0.63666 * 10 9 7 27 27 O 1.21696 * 120.71870 * 179.71025 * 26 10 9 28 28 H 1.08998 * 109.47121 * 270.00303 * 1 2 3 29 29 H 1.09000 * 109.47476 * 30.00680 * 1 2 3 30 30 H 1.09000 * 109.47144 * 150.00861 * 1 2 3 31 31 H 1.08997 * 109.46632 * 89.99210 * 8 7 6 32 32 H 1.08995 * 109.47238 * 210.00000 * 8 7 6 33 33 H 1.09003 * 109.46828 * 329.99754 * 8 7 6 34 34 H 1.08998 * 109.46971 * 45.29735 * 11 10 9 35 35 H 1.09000 * 109.46828 * 165.30118 * 11 10 9 36 36 H 1.09000 * 109.46703 * 195.56006 * 13 12 11 37 37 H 1.09000 * 109.47183 * 315.55919 * 13 12 11 38 38 H 0.97010 * 119.99601 * 179.97438 * 17 16 14 39 39 H 1.08996 * 109.46663 * 315.83641 * 22 12 11 40 40 H 1.08995 * 109.47354 * 75.84004 * 22 12 11 41 41 H 1.09004 * 115.55058 * 29.71594 * 23 22 12 42 42 H 1.09001 * 117.49411 * 0.02562 * 24 23 22 43 43 H 1.09001 * 117.49659 * 145.01976 * 24 23 22 44 44 H 1.08994 * 117.50018 * 214.97913 * 25 23 22 45 45 H 1.09000 * 117.49833 * 0.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.3129 1.0715 0.0000 4 7 3.4916 0.7879 0.0005 5 6 3.6845 -0.4981 0.0015 6 6 2.3303 -1.0945 0.0005 7 6 2.2155 -2.5481 0.0016 8 6 0.8562 -3.1990 0.0021 9 7 3.2890 -3.2808 0.0072 10 7 4.5788 -2.7548 0.0006 11 6 5.7141 -3.6807 0.0006 12 7 5.8671 -4.2678 1.3385 13 6 7.2517 -4.7019 1.5675 14 6 8.1185 -3.4977 1.8312 15 1 7.6999 -2.5048 1.7594 16 6 9.4463 -3.6636 2.1640 17 7 9.9562 -4.8727 2.2508 18 14 10.5209 -2.1709 2.4902 19 1 10.4600 -1.8228 3.9325 20 1 11.9240 -2.4795 2.1143 21 1 10.0331 -1.0239 1.6830 22 6 4.9274 -5.3794 1.5362 23 6 4.8287 -5.7045 3.0280 24 6 5.3117 -7.0828 3.4842 25 6 3.8141 -6.7676 3.4538 26 6 4.8267 -1.4279 0.0003 27 8 5.9693 -1.0091 -0.0003 28 1 -0.3633 0.0001 1.0276 29 1 -0.3634 0.8899 -0.5139 30 1 -0.3633 -0.8901 -0.5137 31 1 0.5286 -3.3565 -1.0255 32 1 0.9128 -4.1582 0.5166 33 1 0.1441 -2.5528 0.5154 34 1 5.5362 -4.4736 -0.7259 35 1 6.6230 -3.1411 -0.2656 36 1 7.2854 -5.3694 2.4286 37 1 7.6184 -5.2275 0.6858 38 1 10.8905 -4.9894 2.4846 39 1 3.9444 -5.0953 1.1605 40 1 5.2833 -6.2566 0.9959 41 1 4.9917 -4.8650 3.7039 42 1 5.7001 -7.7577 2.7214 43 1 5.7921 -7.1501 4.4603 44 1 3.3099 -6.6277 4.4099 45 1 3.2172 -7.2357 2.6711 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728901599.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:08 Heat of formation + Delta-G solvation = 86.990230 kcal Electronic energy + Delta-G solvation = -29195.491837 eV Core-core repulsion = 25217.840423 eV Total energy + Delta-G solvation = -3977.651414 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -46.25607 -41.54704 -39.23272 -38.65736 -37.12389 -35.49201 -34.70188 -34.45677 -33.53981 -29.93857 -29.62076 -29.02296 -28.04204 -26.34110 -25.49752 -24.66407 -23.15569 -22.85008 -21.74190 -21.11573 -20.15421 -19.37464 -19.25967 -18.62436 -17.82262 -17.15479 -16.96140 -16.85672 -16.43149 -16.35005 -15.61515 -15.36188 -15.01481 -14.84619 -14.75551 -14.34418 -14.21682 -13.89699 -13.83781 -13.78289 -13.40649 -13.35741 -13.00241 -12.81548 -12.68089 -12.65012 -12.43919 -12.34508 -12.28724 -12.08214 -11.98001 -11.78616 -11.48321 -11.25580 -11.15091 -10.97146 -10.71621 -10.59335 -9.58261 -9.18625 -8.26315 -6.33420 -0.34230 -0.21308 0.80381 1.04516 1.28601 1.29559 1.43957 1.77280 1.99846 2.09971 2.33846 2.70879 2.90980 3.04836 3.13526 3.22246 3.50563 3.75793 3.93770 3.98564 4.07724 4.18386 4.24187 4.31134 4.35981 4.51252 4.57262 4.74886 4.77200 4.80874 4.81298 4.84810 4.86939 4.92758 5.03769 5.07882 5.16809 5.21356 5.22822 5.30751 5.40034 5.46635 5.63045 6.01226 6.15211 6.34575 6.53026 6.80665 6.85392 6.92952 7.34890 8.83358 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010606 B = 0.004393 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2639.504060 B = 6372.111524 C = 8465.630898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.067 3.933 3 O 0.138 5.862 4 N -0.318 5.318 5 C -0.065 4.065 6 C -0.223 4.223 7 C 0.197 3.803 8 C -0.090 4.090 9 N -0.263 5.263 10 N -0.411 5.411 11 C 0.310 3.690 12 N -0.556 5.556 13 C 0.222 3.778 14 C -0.522 4.522 15 H 0.040 0.960 16 C 0.016 3.984 17 N -0.922 5.922 18 Si 0.951 3.049 19 H -0.271 1.271 20 H -0.269 1.269 21 H -0.286 1.286 22 C 0.090 3.910 23 C -0.159 4.159 24 C -0.190 4.190 25 C -0.140 4.140 26 C 0.557 3.443 27 O -0.550 6.550 28 H 0.127 0.873 29 H 0.116 0.884 30 H 0.131 0.869 31 H 0.117 0.883 32 H 0.094 0.906 33 H 0.121 0.879 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.029 0.971 37 H -0.029 1.029 38 H 0.266 0.734 39 H 0.101 0.899 40 H 0.027 0.973 41 H 0.077 0.923 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.108 0.892 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.847 2.074 -4.982 31.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.001 3.999 3 O 0.063 5.937 4 N -0.016 5.016 5 C -0.227 4.227 6 C -0.232 4.232 7 C 0.011 3.989 8 C -0.149 4.149 9 N -0.072 5.072 10 N -0.230 5.230 11 C 0.099 3.901 12 N -0.282 5.282 13 C 0.096 3.904 14 C -0.561 4.561 15 H 0.058 0.942 16 C -0.183 4.183 17 N -0.563 5.563 18 Si 0.777 3.223 19 H -0.196 1.196 20 H -0.194 1.194 21 H -0.212 1.212 22 C -0.037 4.037 23 C -0.178 4.178 24 C -0.228 4.228 25 C -0.178 4.178 26 C 0.344 3.656 27 O -0.425 6.425 28 H 0.145 0.855 29 H 0.134 0.866 30 H 0.149 0.851 31 H 0.136 0.864 32 H 0.113 0.887 33 H 0.139 0.861 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.047 0.953 37 H -0.011 1.011 38 H 0.075 0.925 39 H 0.119 0.881 40 H 0.045 0.955 41 H 0.096 0.904 42 H 0.106 0.894 43 H 0.103 0.897 44 H 0.126 0.874 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -28.739 2.687 -4.607 29.230 hybrid contribution 1.989 0.553 -0.204 2.075 sum -26.750 3.240 -4.811 27.372 Atomic orbital electron populations 1.21126 0.76925 1.08199 1.07369 1.25542 0.97770 0.82390 0.94238 1.84921 1.09925 1.34211 1.64683 1.73687 0.97145 1.15123 1.15637 1.24219 0.97300 0.91416 1.09741 1.21838 0.89885 0.96998 1.14451 1.23508 0.96421 0.85883 0.93085 1.21051 0.85250 1.02200 1.06364 1.74178 0.88244 1.27425 1.17393 1.49005 1.04665 1.03121 1.66208 1.21748 0.86064 0.90948 0.91379 1.61560 1.07472 1.32425 1.26780 1.19286 0.82114 0.94489 0.94503 1.21389 0.94901 0.93235 1.46553 0.94200 1.25603 0.98943 0.98453 0.95293 1.70025 1.14580 1.22118 1.49551 0.85670 0.78381 0.79698 0.78588 1.19646 1.19378 1.21176 1.21802 0.96811 0.90992 0.94143 1.22101 1.06594 0.92726 0.96388 1.23012 0.98604 0.98634 1.02504 1.23029 0.90932 1.00216 1.03585 1.17790 0.87021 0.83077 0.77699 1.90905 1.24111 1.77303 1.50211 0.85542 0.86562 0.85076 0.86442 0.88729 0.86073 0.90403 0.89821 0.95288 1.01083 0.92504 0.88126 0.95494 0.90445 0.89389 0.89672 0.87415 0.86858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 0.07 9.66 71.23 0.69 0.76 16 2 C 0.07 0.95 7.57 25.38 0.19 1.15 16 3 O 0.14 3.10 11.09 70.93 0.79 3.88 16 4 N -0.32 -10.78 12.05 -46.39 -0.56 -11.34 16 5 C -0.07 -2.37 7.83 44.37 0.35 -2.03 16 6 C -0.22 -5.12 6.47 -19.04 -0.12 -5.24 16 7 C 0.20 4.06 7.10 44.80 0.32 4.37 16 8 C -0.09 -0.55 9.64 71.24 0.69 0.14 16 9 N -0.26 -7.84 9.29 -43.89 -0.41 -8.25 16 10 N -0.41 -16.60 3.74 -475.67 -1.78 -18.38 16 11 C 0.31 13.83 5.50 170.81 0.94 14.77 16 12 N -0.56 -26.21 4.48 -913.16 -4.09 -30.30 16 13 C 0.22 12.43 4.54 85.55 0.39 12.81 16 14 C -0.52 -32.83 8.51 25.60 0.22 -32.61 16 15 H 0.04 2.68 7.81 -2.91 -0.02 2.66 16 16 C 0.02 0.98 5.46 84.66 0.46 1.45 16 17 N -0.92 -57.55 13.29 21.45 0.28 -57.26 16 18 Si 0.95 49.76 29.54 68.60 2.03 51.79 16 19 H -0.27 -13.66 7.11 99.48 0.71 -12.95 16 20 H -0.27 -13.20 7.11 99.48 0.71 -12.50 16 21 H -0.29 -15.60 7.11 99.48 0.71 -14.89 16 22 C 0.09 3.35 5.08 86.30 0.44 3.79 16 23 C -0.16 -5.64 4.97 -10.79 -0.05 -5.69 16 24 C -0.19 -6.09 9.98 30.62 0.31 -5.78 16 25 C -0.14 -3.49 10.25 30.62 0.31 -3.18 16 26 C 0.56 25.27 7.74 86.59 0.67 25.94 16 27 O -0.55 -30.58 16.47 -4.34 -0.07 -30.65 16 28 H 0.13 -0.56 8.14 -2.39 -0.02 -0.58 16 29 H 0.12 -0.47 8.14 -2.39 -0.02 -0.49 16 30 H 0.13 -0.76 6.69 -2.39 -0.02 -0.78 16 31 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 32 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.12 -0.12 6.40 -2.39 -0.02 -0.14 16 34 H 0.08 3.06 7.92 -2.39 -0.02 3.04 16 35 H 0.08 4.42 6.05 -2.39 -0.01 4.41 16 36 H 0.03 1.71 6.95 -2.39 -0.02 1.69 16 37 H -0.03 -1.67 8.00 -2.39 -0.02 -1.69 16 38 H 0.27 15.57 8.31 -92.70 -0.77 14.80 16 39 H 0.10 3.31 6.01 -2.39 -0.01 3.30 16 40 H 0.03 1.00 7.79 -2.39 -0.02 0.98 16 41 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 42 H 0.09 2.83 8.03 -2.39 -0.02 2.81 16 43 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 44 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -92.00 376.67 3.00 -89.00 By element: Atomic # 1 Polarization: -0.17 SS G_CDS: 1.02 Total: 0.85 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: 5.79 Total: 10.65 kcal Atomic # 7 Polarization: -118.98 SS G_CDS: -6.55 Total: -125.53 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: 0.72 Total: -26.76 kcal Atomic # 14 Polarization: 49.76 SS G_CDS: 2.03 Total: 51.79 kcal Total: -92.00 3.00 -89.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728901599.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.993 kcal (2) G-P(sol) polarization free energy of solvation -92.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds