Wall clock time and date at job start Tue Mar 31 2020 16:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38180 * 119.96664 * 2 1 4 4 C 1.38138 * 120.13644 * 180.27807 * 3 2 1 5 5 C 1.38939 * 120.07070 * 359.44657 * 4 3 2 6 6 N 1.39946 * 120.03594 * 180.29821 * 5 4 3 7 7 C 1.47048 * 125.41025 * 174.25431 * 6 5 4 8 8 C 1.54110 * 103.86108 * 179.87010 * 7 6 5 9 9 N 1.47046 * 103.85993 * 0.37367 * 8 7 6 10 10 C 1.33948 * 109.18549 * 359.75686 * 9 8 7 11 11 O 1.21581 * 123.04588 * 180.02562 * 10 9 8 12 12 C 1.38716 * 119.93190 * 0.27248 * 5 4 3 13 13 C 1.38764 * 119.86118 * 0.02562 * 12 5 4 14 14 N 1.39944 * 120.03791 * 180.02562 * 13 12 5 15 15 C 1.34778 * 119.99617 * 334.37951 * 14 13 12 16 16 O 1.21592 * 120.00063 * 3.90232 * 15 14 13 17 17 N 1.34773 * 120.00108 * 183.89858 * 15 14 13 18 18 C 1.46501 * 120.00220 * 180.02562 * 17 15 14 19 19 C 1.53003 * 109.47333 * 180.02562 * 18 17 15 20 20 C 1.50694 * 109.47382 * 179.97438 * 19 18 17 21 21 H 1.07998 * 119.99506 * 0.02562 * 20 19 18 22 22 C 1.37871 * 120.00067 * 179.97438 * 20 19 18 23 23 N 1.31513 * 120.00299 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00129 * 179.97438 * 22 20 19 25 25 H 1.48509 * 109.47162 * 90.00093 * 24 22 20 26 26 H 1.48500 * 109.47435 * 210.00456 * 24 22 20 27 27 H 1.48502 * 109.47287 * 330.00521 * 24 22 20 28 28 H 1.09000 * 109.46675 * 270.27698 * 1 2 3 29 29 H 1.08994 * 109.46962 * 30.27469 * 1 2 3 30 30 H 1.09000 * 109.46970 * 150.28183 * 1 2 3 31 31 H 1.07995 * 119.93007 * 359.97438 * 3 2 1 32 32 H 1.08004 * 119.96493 * 179.71644 * 4 3 2 33 33 H 1.08996 * 110.55057 * 298.59099 * 7 6 5 34 34 H 1.09003 * 110.55089 * 61.40509 * 7 6 5 35 35 H 1.08997 * 110.75603 * 241.67373 * 8 7 6 36 36 H 1.08997 * 110.46125 * 118.92611 * 8 7 6 37 37 H 0.97001 * 125.40969 * 179.75099 * 9 8 7 38 38 H 1.08001 * 120.07140 * 179.97438 * 12 5 4 39 39 H 0.96995 * 120.00298 * 154.38221 * 14 13 12 40 40 H 0.97001 * 120.00188 * 0.02562 * 17 15 14 41 41 H 1.08997 * 109.46833 * 300.00001 * 18 17 15 42 42 H 1.08996 * 109.47174 * 60.00081 * 18 17 15 43 43 H 1.09008 * 109.47006 * 300.00192 * 19 18 17 44 44 H 1.09005 * 109.47059 * 59.99541 * 19 18 17 45 45 H 0.97000 * 120.00364 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1971 0.0000 4 6 3.5786 1.2012 -0.0058 5 6 4.2783 0.0009 0.0000 6 7 5.6778 0.0059 0.0004 7 6 6.5341 -1.1829 0.1261 8 6 7.9654 -0.6151 0.0639 9 7 7.7635 0.8342 -0.0810 10 6 6.4500 1.0951 -0.1079 11 8 5.9994 2.2187 -0.2209 12 6 3.5884 -1.2025 0.0058 13 6 2.2008 -1.2034 0.0054 14 7 1.5010 -2.4153 0.0118 15 6 2.0757 -3.5278 -0.4866 16 8 3.2269 -3.4950 -0.8766 17 7 1.3744 -4.6768 -0.5527 18 6 1.9992 -5.8863 -1.0939 19 6 0.9946 -7.0397 -1.0569 20 6 1.6371 -8.2837 -1.6142 21 1 2.6598 -8.2546 -1.9598 22 6 0.9196 -9.4590 -1.6819 23 7 -0.3257 -9.4945 -1.2606 24 14 1.7158 -11.0009 -2.3734 25 1 2.3715 -11.7548 -1.2747 26 1 0.6775 -11.8526 -3.0073 27 1 2.7315 -10.6211 -3.3880 28 1 -0.3633 0.0050 1.0277 29 1 -0.3633 0.8875 -0.5181 30 1 -0.3633 -0.8925 -0.5095 31 1 1.6555 2.1314 -0.0004 32 1 4.1152 2.1385 -0.0104 33 1 6.3592 -1.6812 1.0796 34 1 6.3604 -1.8690 -0.7029 35 1 8.5024 -1.0146 -0.7964 36 1 8.5034 -0.8362 0.9857 37 1 8.4695 1.4962 -0.1466 38 1 4.1301 -2.1368 0.0099 39 1 0.6024 -2.4546 0.3750 40 1 0.4559 -4.7030 -0.2419 41 1 2.3073 -5.7063 -2.1238 42 1 2.8715 -6.1445 -0.4935 43 1 0.6860 -7.2199 -0.0271 44 1 0.1224 -6.7813 -1.6576 45 1 -0.8306 -10.3214 -1.3085 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786246175.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:48:26 Heat of formation + Delta-G solvation = -11.818817 kcal Electronic energy + Delta-G solvation = -27761.491519 eV Core-core repulsion = 23779.555424 eV Total energy + Delta-G solvation = -3981.936096 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.69636 -40.51043 -38.64185 -36.76517 -35.57809 -34.96848 -33.93060 -32.91296 -31.54615 -30.30168 -29.29760 -28.90760 -26.60613 -24.92115 -23.87869 -22.61940 -22.40428 -21.10007 -20.71813 -20.23945 -18.56064 -17.93805 -17.39054 -16.98763 -16.40801 -16.02740 -15.71633 -15.46185 -15.02056 -14.65000 -14.54050 -14.34978 -14.23449 -14.06259 -13.95610 -13.68913 -13.43104 -13.25422 -13.18268 -12.64850 -12.46747 -12.32799 -12.08275 -11.79096 -11.56352 -11.25591 -11.10785 -10.75868 -10.67354 -10.38234 -10.17190 -9.91660 -9.78326 -9.57906 -9.50294 -9.30469 -8.69146 -8.45420 -8.15348 -7.65878 -6.13893 -4.16966 1.28448 1.46050 2.16384 2.81129 2.83151 3.26272 3.32862 3.34042 3.36834 3.48222 3.90218 3.99880 4.31660 4.45167 4.56013 4.64482 4.90276 4.93207 5.05468 5.17213 5.23445 5.23770 5.34822 5.41501 5.49937 5.52144 5.71747 5.82625 5.88091 6.10946 6.29011 6.30943 6.31874 6.45370 6.52499 6.66254 6.68704 6.76261 6.84550 7.10641 7.15797 7.22644 7.48881 7.55874 7.84420 8.13354 8.22295 8.25954 8.73625 8.89155 9.48160 10.97710 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014492 B = 0.002425 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.693533 B =11544.109982 C =13355.181984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.151 4.151 3 C -0.072 4.072 4 C -0.177 4.177 5 C 0.199 3.801 6 N -0.565 5.565 7 C 0.084 3.916 8 C 0.093 3.907 9 N -0.738 5.738 10 C 0.700 3.300 11 O -0.570 6.570 12 C -0.173 4.173 13 C 0.202 3.798 14 N -0.685 5.685 15 C 0.698 3.302 16 O -0.579 6.579 17 N -0.731 5.731 18 C 0.139 3.861 19 C 0.013 3.987 20 C -0.522 4.522 21 H 0.060 0.940 22 C 0.059 3.941 23 N -0.894 5.894 24 Si 0.897 3.103 25 H -0.279 1.279 26 H -0.286 1.286 27 H -0.272 1.272 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.127 0.873 32 H 0.155 0.845 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.432 0.568 38 H 0.162 0.838 39 H 0.407 0.593 40 H 0.395 0.605 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.023 0.977 44 H 0.023 0.977 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.368 20.407 5.821 23.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.155 4.155 3 C -0.091 4.091 4 C -0.198 4.198 5 C 0.104 3.896 6 N -0.291 5.291 7 C -0.039 4.039 8 C -0.033 4.033 9 N -0.400 5.400 10 C 0.401 3.599 11 O -0.448 6.448 12 C -0.196 4.196 13 C 0.105 3.895 14 N -0.331 5.331 15 C 0.398 3.602 16 O -0.458 6.458 17 N -0.384 5.384 18 C 0.017 3.983 19 C -0.025 4.025 20 C -0.561 4.561 21 H 0.078 0.922 22 C -0.143 4.143 23 N -0.533 5.533 24 Si 0.725 3.275 25 H -0.205 1.205 26 H -0.212 1.212 27 H -0.197 1.197 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.145 0.855 32 H 0.172 0.828 33 H 0.110 0.890 34 H 0.116 0.884 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.274 0.726 38 H 0.180 0.820 39 H 0.243 0.757 40 H 0.229 0.771 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.041 0.959 44 H 0.041 0.959 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.947 20.708 5.382 23.595 hybrid contribution -0.159 -0.929 -0.081 0.946 sum 9.788 19.780 5.301 22.697 Atomic orbital electron populations 1.20654 0.91099 1.02839 1.01988 1.19551 0.96023 0.91638 1.08288 1.20622 0.93189 0.96714 0.98559 1.21509 0.94266 0.98354 1.05670 1.17226 0.78935 0.94281 0.99133 1.44423 1.04114 1.07881 1.72701 1.22617 0.87580 0.88901 1.04834 1.22426 0.96693 0.80617 1.03517 1.45081 1.06369 1.09147 1.79425 1.15814 0.81991 0.84158 0.77898 1.90848 1.75207 1.21610 1.57136 1.21182 0.93167 0.98094 1.07179 1.16984 0.90321 0.83908 0.98284 1.42715 1.19443 1.06874 1.64095 1.16067 0.85089 0.80272 0.78738 1.90782 1.16217 1.84083 1.54680 1.45607 1.16508 1.09430 1.66846 1.21670 0.97326 0.81913 0.97424 1.19334 0.94054 0.91154 0.97952 1.21022 0.99114 0.94008 1.41909 0.92200 1.24993 0.94845 0.99134 0.95303 1.69949 1.08922 1.27469 1.46919 0.86508 0.79050 0.82693 0.79273 1.20548 1.21159 1.19704 0.91471 0.91299 0.91929 0.85508 0.82787 0.88961 0.88423 0.89356 0.89488 0.72628 0.82048 0.75727 0.77106 0.92502 0.92508 0.95912 0.95901 0.92803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 9.44 36.01 0.34 -0.60 16 2 C -0.15 -1.76 5.90 -104.40 -0.62 -2.38 16 3 C -0.07 -0.84 9.69 -39.64 -0.38 -1.22 16 4 C -0.18 -2.41 9.29 -39.36 -0.37 -2.78 16 5 C 0.20 2.78 6.62 -83.72 -0.55 2.23 16 6 N -0.56 -6.95 3.16 -118.27 -0.37 -7.32 16 7 C 0.08 0.72 6.48 -3.16 -0.02 0.70 16 8 C 0.09 0.52 8.06 -3.16 -0.03 0.50 16 9 N -0.74 -5.97 6.37 -64.70 -0.41 -6.38 16 10 C 0.70 8.80 8.52 -88.39 -0.75 8.04 16 11 O -0.57 -8.94 14.75 5.29 0.08 -8.86 16 12 C -0.17 -2.52 8.23 -39.21 -0.32 -2.84 16 13 C 0.20 2.76 6.43 -83.71 -0.54 2.22 16 14 N -0.68 -8.83 4.96 -14.24 -0.07 -8.91 16 15 C 0.70 11.43 8.45 -86.92 -0.73 10.69 16 16 O -0.58 -11.15 13.26 5.29 0.07 -11.08 16 17 N -0.73 -11.98 5.56 -65.23 -0.36 -12.34 16 18 C 0.14 2.80 5.61 -4.04 -0.02 2.78 16 19 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 20 C -0.52 -14.04 9.11 -34.45 -0.31 -14.35 16 21 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 22 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 23 N -0.89 -25.57 13.29 55.43 0.74 -24.83 16 24 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 30 H 0.06 0.53 6.99 -51.93 -0.36 0.16 16 31 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 32 H 0.15 2.27 5.26 -52.48 -0.28 1.99 16 33 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.10 0.88 8.12 -51.93 -0.42 0.46 16 35 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.43 2.53 8.96 -40.82 -0.37 2.16 16 38 H 0.16 2.56 4.75 -52.49 -0.25 2.31 16 39 H 0.41 3.98 7.44 -40.82 -0.30 3.68 16 40 H 0.40 5.50 8.49 -40.82 -0.35 5.15 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 43 H 0.02 0.56 8.14 -51.92 -0.42 0.14 16 44 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 371.93 15.07 5.60 5.60 Total: -1.00 -34.56 371.93 -10.39 -44.95 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -6.09 Total: 8.61 kcal Atomic # 6 Polarization: 9.22 SS G_CDS: -4.55 Total: 4.67 kcal Atomic # 7 Polarization: -59.29 SS G_CDS: -0.48 Total: -59.77 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: 0.15 Total: -19.94 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.56 -10.39 -44.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786246175.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.133 kcal (2) G-P(sol) polarization free energy of solvation -34.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds