Wall clock time and date at job start Tue Mar 31 2020 16:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38180 * 119.96664 * 2 1 4 4 C 1.38138 * 120.13644 * 180.27807 * 3 2 1 5 5 C 1.38939 * 120.07070 * 359.44657 * 4 3 2 6 6 N 1.39946 * 120.03594 * 180.29821 * 5 4 3 7 7 C 1.47048 * 125.41025 * 174.25431 * 6 5 4 8 8 C 1.54110 * 103.86108 * 179.87010 * 7 6 5 9 9 N 1.47046 * 103.85993 * 0.37367 * 8 7 6 10 10 C 1.33948 * 109.18549 * 359.75686 * 9 8 7 11 11 O 1.21581 * 123.04588 * 180.02562 * 10 9 8 12 12 C 1.38716 * 119.93190 * 0.27248 * 5 4 3 13 13 C 1.38764 * 119.86118 * 0.02562 * 12 5 4 14 14 N 1.39944 * 120.03791 * 180.02562 * 13 12 5 15 15 C 1.34778 * 119.99617 * 334.37951 * 14 13 12 16 16 O 1.21592 * 120.00063 * 3.90232 * 15 14 13 17 17 N 1.34773 * 120.00108 * 183.89858 * 15 14 13 18 18 C 1.46501 * 120.00220 * 180.02562 * 17 15 14 19 19 C 1.53003 * 109.47333 * 180.02562 * 18 17 15 20 20 C 1.50694 * 109.47382 * 179.97438 * 19 18 17 21 21 H 1.07998 * 119.99506 * 0.02562 * 20 19 18 22 22 C 1.37871 * 120.00067 * 179.97438 * 20 19 18 23 23 N 1.31513 * 120.00299 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00129 * 179.97438 * 22 20 19 25 25 H 1.48509 * 109.47162 * 90.00093 * 24 22 20 26 26 H 1.48500 * 109.47435 * 210.00456 * 24 22 20 27 27 H 1.48502 * 109.47287 * 330.00521 * 24 22 20 28 28 H 1.09000 * 109.46675 * 270.27698 * 1 2 3 29 29 H 1.08994 * 109.46962 * 30.27469 * 1 2 3 30 30 H 1.09000 * 109.46970 * 150.28183 * 1 2 3 31 31 H 1.07995 * 119.93007 * 359.97438 * 3 2 1 32 32 H 1.08004 * 119.96493 * 179.71644 * 4 3 2 33 33 H 1.08996 * 110.55057 * 298.59099 * 7 6 5 34 34 H 1.09003 * 110.55089 * 61.40509 * 7 6 5 35 35 H 1.08997 * 110.75603 * 241.67373 * 8 7 6 36 36 H 1.08997 * 110.46125 * 118.92611 * 8 7 6 37 37 H 0.97001 * 125.40969 * 179.75099 * 9 8 7 38 38 H 1.08001 * 120.07140 * 179.97438 * 12 5 4 39 39 H 0.96995 * 120.00298 * 154.38221 * 14 13 12 40 40 H 0.97001 * 120.00188 * 0.02562 * 17 15 14 41 41 H 1.08997 * 109.46833 * 300.00001 * 18 17 15 42 42 H 1.08996 * 109.47174 * 60.00081 * 18 17 15 43 43 H 1.09008 * 109.47006 * 300.00192 * 19 18 17 44 44 H 1.09005 * 109.47059 * 59.99541 * 19 18 17 45 45 H 0.97000 * 120.00364 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1971 0.0000 4 6 3.5786 1.2012 -0.0058 5 6 4.2783 0.0009 0.0000 6 7 5.6778 0.0059 0.0004 7 6 6.5341 -1.1829 0.1261 8 6 7.9654 -0.6151 0.0639 9 7 7.7635 0.8342 -0.0810 10 6 6.4500 1.0951 -0.1079 11 8 5.9994 2.2187 -0.2209 12 6 3.5884 -1.2025 0.0058 13 6 2.2008 -1.2034 0.0054 14 7 1.5010 -2.4153 0.0118 15 6 2.0757 -3.5278 -0.4866 16 8 3.2269 -3.4950 -0.8766 17 7 1.3744 -4.6768 -0.5527 18 6 1.9992 -5.8863 -1.0939 19 6 0.9946 -7.0397 -1.0569 20 6 1.6371 -8.2837 -1.6142 21 1 2.6598 -8.2546 -1.9598 22 6 0.9196 -9.4590 -1.6819 23 7 -0.3257 -9.4945 -1.2606 24 14 1.7158 -11.0009 -2.3734 25 1 2.3715 -11.7548 -1.2747 26 1 0.6775 -11.8526 -3.0073 27 1 2.7315 -10.6211 -3.3880 28 1 -0.3633 0.0050 1.0277 29 1 -0.3633 0.8875 -0.5181 30 1 -0.3633 -0.8925 -0.5095 31 1 1.6555 2.1314 -0.0004 32 1 4.1152 2.1385 -0.0104 33 1 6.3592 -1.6812 1.0796 34 1 6.3604 -1.8690 -0.7029 35 1 8.5024 -1.0146 -0.7964 36 1 8.5034 -0.8362 0.9857 37 1 8.4695 1.4962 -0.1466 38 1 4.1301 -2.1368 0.0099 39 1 0.6024 -2.4546 0.3750 40 1 0.4559 -4.7030 -0.2419 41 1 2.3073 -5.7063 -2.1238 42 1 2.8715 -6.1445 -0.4935 43 1 0.6860 -7.2199 -0.0271 44 1 0.1224 -6.7813 -1.6576 45 1 -0.8306 -10.3214 -1.3085 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000786246175.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:48:25 Heat of formation + Delta-G solvation = -36.328660 kcal Electronic energy + Delta-G solvation = -27762.554346 eV Core-core repulsion = 23779.555424 eV Total energy + Delta-G solvation = -3982.998922 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.57353 -41.68092 -39.75567 -37.70159 -36.83191 -36.31080 -35.00274 -34.77263 -32.39161 -31.84408 -30.34608 -29.93046 -27.50791 -26.66791 -24.83011 -23.52386 -23.47034 -22.73002 -21.93456 -21.27187 -19.64010 -19.06374 -18.48715 -18.23423 -17.75049 -17.02220 -16.84787 -16.70224 -16.47481 -16.20001 -15.55905 -15.42079 -15.27798 -15.23436 -14.92432 -14.72614 -14.57400 -14.46223 -14.24349 -13.91856 -13.38666 -13.20565 -13.17214 -12.98617 -12.86664 -12.65155 -12.52419 -12.50349 -12.25743 -11.80532 -11.61220 -11.42582 -11.20440 -10.88918 -10.84690 -10.58786 -10.19957 -10.08188 -9.23285 -8.63106 -8.22563 -6.32427 0.28715 0.41165 1.33486 1.43482 1.43966 1.54410 1.60991 1.86513 2.08901 2.42331 2.81663 2.88849 3.12842 3.21273 3.40071 3.77187 4.02589 4.05910 4.10333 4.27886 4.35673 4.47358 4.54008 4.55250 4.55673 4.66754 4.80333 4.81662 4.88534 4.89904 4.90874 5.16042 5.26634 5.27904 5.41855 5.46921 5.54534 5.57773 5.61571 5.65450 5.80892 5.98951 6.05904 6.17603 6.18331 6.34747 6.81124 6.97983 7.35241 7.36908 7.44977 8.89248 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014492 B = 0.002425 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.693533 B =11544.109982 C =13355.181984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.143 4.143 3 C -0.068 4.068 4 C -0.190 4.190 5 C 0.185 3.815 6 N -0.573 5.573 7 C 0.075 3.925 8 C 0.099 3.901 9 N -0.723 5.723 10 C 0.689 3.311 11 O -0.610 6.610 12 C -0.186 4.186 13 C 0.184 3.816 14 N -0.666 5.666 15 C 0.698 3.302 16 O -0.609 6.609 17 N -0.725 5.725 18 C 0.161 3.839 19 C 0.023 3.977 20 C -0.544 4.544 21 H 0.060 0.940 22 C 0.007 3.993 23 N -0.927 5.927 24 Si 0.963 3.037 25 H -0.272 1.272 26 H -0.282 1.282 27 H -0.266 1.266 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.155 0.845 32 H 0.142 0.858 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.111 0.889 36 H 0.118 0.882 37 H 0.443 0.557 38 H 0.147 0.853 39 H 0.423 0.577 40 H 0.409 0.591 41 H 0.046 0.954 42 H 0.050 0.950 43 H 0.010 0.990 44 H 0.008 0.992 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.690 20.590 6.035 23.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.147 4.147 3 C -0.087 4.087 4 C -0.211 4.211 5 C 0.090 3.910 6 N -0.299 5.299 7 C -0.047 4.047 8 C -0.024 4.024 9 N -0.385 5.385 10 C 0.389 3.611 11 O -0.491 6.491 12 C -0.210 4.210 13 C 0.087 3.913 14 N -0.314 5.314 15 C 0.399 3.601 16 O -0.490 6.490 17 N -0.379 5.379 18 C 0.037 3.963 19 C -0.015 4.015 20 C -0.583 4.583 21 H 0.079 0.921 22 C -0.192 4.192 23 N -0.566 5.566 24 Si 0.788 3.212 25 H -0.198 1.198 26 H -0.208 1.208 27 H -0.190 1.190 28 H 0.104 0.896 29 H 0.102 0.898 30 H 0.084 0.916 31 H 0.173 0.827 32 H 0.160 0.840 33 H 0.117 0.883 34 H 0.107 0.893 35 H 0.129 0.871 36 H 0.136 0.864 37 H 0.287 0.713 38 H 0.164 0.836 39 H 0.262 0.738 40 H 0.245 0.755 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.028 0.972 44 H 0.027 0.973 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.282 20.902 5.622 23.963 hybrid contribution -0.253 -0.918 -0.123 0.960 sum 10.029 19.984 5.499 23.026 Atomic orbital electron populations 1.20745 0.88518 1.03756 1.03496 1.19854 0.97777 0.90574 1.06479 1.20953 0.92532 0.98000 0.97206 1.21578 0.95320 0.97753 1.06470 1.17376 0.80018 0.94225 0.99353 1.44565 1.03927 1.08998 1.72397 1.22850 0.88882 0.88066 1.04877 1.22655 0.94992 0.78648 1.06154 1.45059 1.04930 1.10663 1.77895 1.16118 0.83282 0.83674 0.78004 1.90807 1.76227 1.23057 1.59025 1.21090 0.93835 0.97607 1.08459 1.17210 0.90282 0.84577 0.99249 1.42422 1.19944 1.05717 1.63289 1.16106 0.84659 0.80743 0.78611 1.90779 1.17622 1.84636 1.55917 1.45256 1.17097 1.08581 1.66965 1.21135 0.96071 0.82165 0.96933 1.19139 0.94113 0.91735 0.96504 1.21460 0.99411 0.95409 1.41987 0.92128 1.25846 0.95362 1.02370 0.95587 1.70051 1.10199 1.28424 1.47970 0.85474 0.78228 0.78755 0.78769 1.19768 1.20765 1.19004 0.89551 0.89789 0.91644 0.82742 0.84026 0.88276 0.89300 0.87064 0.86439 0.71321 0.83613 0.73764 0.75528 0.93548 0.93128 0.97172 0.97336 0.92605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.55 9.44 71.24 0.67 -0.88 16 2 C -0.14 -3.10 5.90 -19.72 -0.12 -3.21 16 3 C -0.07 -1.51 9.69 22.23 0.22 -1.29 16 4 C -0.19 -5.25 9.29 22.41 0.21 -5.04 16 5 C 0.19 5.34 6.62 38.13 0.25 5.59 16 6 N -0.57 -14.41 3.16 -646.81 -2.04 -16.45 16 7 C 0.08 1.29 6.48 86.65 0.56 1.85 16 8 C 0.10 0.93 8.06 86.65 0.70 1.63 16 9 N -0.72 -10.94 6.37 -477.35 -3.04 -13.98 16 10 C 0.69 17.50 8.52 179.57 1.53 19.03 16 11 O -0.61 -19.75 14.75 -3.97 -0.06 -19.81 16 12 C -0.19 -5.54 8.23 22.51 0.19 -5.36 16 13 C 0.18 4.89 6.43 38.13 0.25 5.13 16 14 N -0.67 -16.51 4.96 -317.22 -1.57 -18.08 16 15 C 0.70 22.63 8.45 179.06 1.51 24.14 16 16 O -0.61 -23.74 13.26 -4.00 -0.05 -23.80 16 17 N -0.72 -23.45 5.56 -478.53 -2.66 -26.11 16 18 C 0.16 6.52 5.61 86.38 0.48 7.00 16 19 C 0.02 1.09 5.09 29.85 0.15 1.24 16 20 C -0.54 -29.39 9.11 25.60 0.23 -29.16 16 21 H 0.06 3.19 7.74 -2.91 -0.02 3.16 16 22 C 0.01 0.39 5.46 84.65 0.46 0.85 16 23 N -0.93 -53.18 13.29 21.44 0.28 -52.89 16 24 Si 0.96 42.55 29.54 68.60 2.03 44.58 16 25 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 26 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 27 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 28 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.08 0.99 8.09 -2.39 -0.02 0.97 16 30 H 0.06 0.92 6.99 -2.39 -0.02 0.90 16 31 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 32 H 0.14 4.33 5.26 -2.91 -0.02 4.31 16 33 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.09 1.66 8.12 -2.39 -0.02 1.64 16 35 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.44 4.62 8.96 -92.71 -0.83 3.79 16 38 H 0.15 4.79 4.75 -2.91 -0.01 4.78 16 39 H 0.42 7.50 7.44 -92.71 -0.69 6.81 16 40 H 0.41 11.01 8.49 -92.71 -0.79 10.23 16 41 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 44 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 45 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -76.04 371.93 -1.06 -77.10 By element: Atomic # 1 Polarization: 29.15 SS G_CDS: -1.24 Total: 27.91 kcal Atomic # 6 Polarization: 14.24 SS G_CDS: 7.30 Total: 21.53 kcal Atomic # 7 Polarization: -118.48 SS G_CDS: -9.03 Total: -127.52 kcal Atomic # 8 Polarization: -43.50 SS G_CDS: -0.11 Total: -43.61 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -76.04 -1.06 -77.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786246175.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.776 kcal (2) G-P(sol) polarization free energy of solvation -76.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds