Wall clock time and date at job start Tue Mar 31 2020 16:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38177 * 119.96910 * 2 1 4 4 C 1.38134 * 120.14020 * 180.25455 * 3 2 1 5 5 C 1.38937 * 120.06901 * 359.44518 * 4 3 2 6 6 N 1.39938 * 120.03694 * 180.29605 * 5 4 3 7 7 C 1.47053 * 125.41354 * 174.29820 * 6 5 4 8 8 C 1.54107 * 103.86420 * 179.87286 * 7 6 5 9 9 N 1.47049 * 103.86237 * 0.37525 * 8 7 6 10 10 C 1.33952 * 109.18025 * 359.75163 * 9 8 7 11 11 O 1.21579 * 123.04240 * 180.02562 * 10 9 8 12 12 C 1.38722 * 119.92830 * 0.28259 * 5 4 3 13 13 C 1.38755 * 119.86390 * 359.97438 * 12 5 4 14 14 N 1.39941 * 120.03744 * 179.97438 * 13 12 5 15 15 C 1.34779 * 120.00036 * 330.17014 * 14 13 12 16 16 O 1.21586 * 119.99430 * 4.63173 * 15 14 13 17 17 N 1.34777 * 120.00351 * 184.62574 * 15 14 13 18 18 C 1.46497 * 119.99973 * 180.02562 * 17 15 14 19 19 H 1.09000 * 109.47180 * 34.99963 * 18 17 15 20 20 C 1.52999 * 109.46813 * 274.99967 * 18 17 15 21 21 C 1.50701 * 109.46825 * 155.00287 * 18 17 15 22 22 H 1.07994 * 120.00165 * 5.38569 * 21 18 17 23 23 C 1.37880 * 119.99649 * 185.38999 * 21 18 17 24 24 N 1.31513 * 119.99928 * 8.62780 * 23 21 18 25 25 Si 1.86802 * 119.99986 * 188.63525 * 23 21 18 26 26 H 1.48496 * 109.47346 * 94.98573 * 25 23 21 27 27 H 1.48494 * 109.47246 * 214.98947 * 25 23 21 28 28 H 1.48502 * 109.46745 * 334.98808 * 25 23 21 29 29 H 1.09002 * 109.47573 * 270.29536 * 1 2 3 30 30 H 1.09006 * 109.46867 * 30.29294 * 1 2 3 31 31 H 1.09002 * 109.47251 * 150.29313 * 1 2 3 32 32 H 1.08006 * 119.93043 * 359.97438 * 3 2 1 33 33 H 1.07998 * 119.96570 * 179.72631 * 4 3 2 34 34 H 1.08998 * 110.54782 * 298.59746 * 7 6 5 35 35 H 1.09002 * 110.54698 * 61.40697 * 7 6 5 36 36 H 1.09001 * 110.75780 * 241.67543 * 8 7 6 37 37 H 1.08998 * 110.46110 * 118.92796 * 8 7 6 38 38 H 0.97003 * 125.41147 * 179.76111 * 9 8 7 39 39 H 1.08003 * 120.06593 * 179.97438 * 12 5 4 40 40 H 0.97007 * 120.00536 * 150.17191 * 14 13 12 41 41 H 0.97007 * 119.99620 * 0.02562 * 17 15 14 42 42 H 1.09003 * 109.47018 * 183.79107 * 20 18 17 43 43 H 1.09004 * 109.47511 * 303.78765 * 20 18 17 44 44 H 1.09002 * 109.47551 * 63.79161 * 20 18 17 45 45 H 0.96999 * 119.99649 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1970 0.0000 4 6 3.5786 1.2011 -0.0053 5 6 4.2783 0.0009 0.0010 6 7 5.6777 0.0059 0.0019 7 6 6.5340 -1.1830 0.1273 8 6 7.9654 -0.6153 0.0659 9 7 7.7636 0.8342 -0.0783 10 6 6.4500 1.0951 -0.1056 11 8 5.9995 2.2187 -0.2181 12 6 3.5883 -1.2025 0.0067 13 6 2.2007 -1.2034 0.0066 14 7 1.5009 -2.4152 0.0118 15 6 2.0409 -3.5076 -0.5641 16 8 3.1698 -3.4628 -1.0133 17 7 1.3295 -4.6498 -0.6418 18 6 1.9166 -5.8373 -1.2673 19 1 2.9845 -5.8712 -1.0515 20 6 1.7040 -5.7741 -2.7811 21 6 1.2535 -7.0741 -0.7180 22 1 0.4152 -6.9829 -0.0434 23 6 1.7173 -8.3220 -1.0767 24 7 2.8365 -8.4368 -1.7578 25 14 0.7559 -9.8496 -0.5955 26 1 -0.1336 -10.2481 -1.7158 27 1 1.7008 -10.9553 -0.2963 28 1 -0.0639 -9.5596 0.6083 29 1 -0.3634 0.0053 1.0276 30 1 -0.3633 0.8874 -0.5184 31 1 -0.3634 -0.8926 -0.5093 32 1 1.6556 2.1314 -0.0004 33 1 4.1152 2.1384 -0.0098 34 1 6.3587 -1.6819 1.0804 35 1 6.3606 -1.8686 -0.7022 36 1 8.5027 -1.0143 -0.7945 37 1 8.5030 -0.8369 0.9878 38 1 8.4696 1.4962 -0.1434 39 1 4.1300 -2.1369 0.0111 40 1 0.6272 -2.4691 0.4298 41 1 0.4287 -4.6854 -0.2836 42 1 2.0807 -6.6886 -3.2394 43 1 0.6399 -5.6725 -2.9947 44 1 2.2398 -4.9165 -3.1879 45 1 3.1626 -9.3147 -2.0104 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786262283.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:48:51 Heat of formation + Delta-G solvation = -8.164780 kcal Electronic energy + Delta-G solvation = -28447.402760 eV Core-core repulsion = 24465.625115 eV Total energy + Delta-G solvation = -3981.777645 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.56722 -40.20819 -38.41123 -36.65034 -35.45912 -34.80928 -33.67885 -32.43231 -31.40666 -29.93081 -29.14418 -28.38134 -26.41453 -25.26175 -23.90972 -22.54313 -22.40975 -21.20872 -20.11400 -19.85630 -18.38714 -18.02811 -17.23492 -16.86597 -16.20847 -15.77453 -15.54110 -15.14734 -14.87605 -14.57818 -14.43285 -14.12092 -14.05955 -13.78031 -13.65175 -13.50145 -13.13679 -13.11724 -12.50897 -12.42171 -12.33637 -12.04681 -11.83156 -11.65724 -11.36452 -11.14364 -11.07609 -10.79568 -10.49783 -10.36988 -10.26613 -10.00997 -9.74620 -9.38618 -9.29326 -9.14935 -8.56954 -8.18979 -7.90190 -7.49410 -6.19411 -4.25161 1.43186 1.62260 2.28938 2.94415 3.17200 3.21360 3.29302 3.31669 3.59903 3.70140 4.09220 4.12378 4.29226 4.67216 4.70020 4.94937 5.03535 5.07929 5.14937 5.17846 5.32749 5.37563 5.48251 5.56875 5.62158 5.64937 5.90411 5.96358 6.02793 6.40915 6.46493 6.60602 6.65556 6.72252 6.84613 6.87021 6.90895 7.03963 7.17856 7.29774 7.36676 7.39904 7.58359 7.74824 7.89789 8.03855 8.33601 8.69645 8.80147 9.18862 9.42024 10.88984 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014371 B = 0.002950 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.905186 B = 9488.887672 C =11070.144094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.152 4.152 3 C -0.074 4.074 4 C -0.178 4.178 5 C 0.197 3.803 6 N -0.564 5.564 7 C 0.083 3.917 8 C 0.093 3.907 9 N -0.739 5.739 10 C 0.701 3.299 11 O -0.572 6.572 12 C -0.165 4.165 13 C 0.207 3.793 14 N -0.691 5.691 15 C 0.693 3.307 16 O -0.581 6.581 17 N -0.718 5.718 18 C 0.279 3.721 19 H 0.056 0.944 20 C -0.143 4.143 21 C -0.537 4.537 22 H 0.061 0.939 23 C 0.069 3.931 24 N -0.881 5.881 25 Si 0.899 3.101 26 H -0.279 1.279 27 H -0.285 1.285 28 H -0.273 1.273 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.125 0.875 33 H 0.154 0.846 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.431 0.569 39 H 0.157 0.843 40 H 0.403 0.597 41 H 0.386 0.614 42 H 0.074 0.926 43 H 0.028 0.972 44 H 0.020 0.980 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.846 15.888 5.418 17.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.156 4.156 3 C -0.093 4.093 4 C -0.199 4.199 5 C 0.103 3.897 6 N -0.291 5.291 7 C -0.040 4.040 8 C -0.032 4.032 9 N -0.401 5.401 10 C 0.402 3.598 11 O -0.450 6.450 12 C -0.189 4.189 13 C 0.109 3.891 14 N -0.338 5.338 15 C 0.394 3.606 16 O -0.459 6.459 17 N -0.369 5.369 18 C 0.178 3.822 19 H 0.074 0.926 20 C -0.202 4.202 21 C -0.575 4.575 22 H 0.080 0.920 23 C -0.135 4.135 24 N -0.517 5.517 25 Si 0.726 3.274 26 H -0.205 1.205 27 H -0.211 1.211 28 H -0.198 1.198 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.143 0.857 33 H 0.171 0.829 34 H 0.111 0.889 35 H 0.117 0.883 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.273 0.727 39 H 0.174 0.826 40 H 0.239 0.761 41 H 0.218 0.782 42 H 0.093 0.907 43 H 0.047 0.953 44 H 0.039 0.961 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.693 16.158 4.815 17.501 hybrid contribution -0.913 -0.935 0.476 1.391 sum 3.780 15.223 5.291 16.553 Atomic orbital electron populations 1.20638 0.91233 1.02739 1.01815 1.19573 0.95968 0.91736 1.08331 1.20599 0.93186 0.96663 0.98861 1.21472 0.94246 0.98264 1.05947 1.17221 0.78873 0.94295 0.99318 1.44422 1.04151 1.07842 1.72648 1.22629 0.87510 0.88914 1.04955 1.22426 0.96752 0.80567 1.03481 1.45081 1.06365 1.09140 1.79487 1.15812 0.81976 0.84167 0.77887 1.90840 1.75233 1.21638 1.57263 1.21043 0.93258 0.97752 1.06827 1.16974 0.90243 0.84132 0.97735 1.42827 1.22415 1.08131 1.60402 1.16166 0.85082 0.80333 0.79052 1.90806 1.17899 1.83245 1.53994 1.45871 1.17819 1.10911 1.62301 1.18685 0.95747 0.79073 0.88732 0.92601 1.22043 0.98417 1.00505 0.99198 1.21179 1.16646 0.90176 1.29500 0.92049 1.24877 0.94596 0.98980 0.95044 1.69979 1.19158 1.24284 1.38314 0.86477 0.79774 0.82340 0.78776 1.20533 1.21116 1.19827 0.91635 0.91492 0.91895 0.85668 0.82879 0.88937 0.88310 0.89361 0.89526 0.72702 0.82601 0.76124 0.78161 0.90742 0.95313 0.96105 0.92542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 9.45 36.01 0.34 -0.73 16 2 C -0.15 -2.01 5.90 -104.40 -0.62 -2.62 16 3 C -0.07 -0.96 9.69 -39.64 -0.38 -1.35 16 4 C -0.18 -2.68 9.29 -39.36 -0.37 -3.04 16 5 C 0.20 3.08 6.62 -83.72 -0.55 2.52 16 6 N -0.56 -7.79 3.16 -118.26 -0.37 -8.17 16 7 C 0.08 0.85 6.48 -3.16 -0.02 0.83 16 8 C 0.09 0.65 8.06 -3.16 -0.03 0.63 16 9 N -0.74 -6.85 6.37 -64.70 -0.41 -7.26 16 10 C 0.70 9.68 8.52 -88.39 -0.75 8.93 16 11 O -0.57 -9.61 14.75 5.30 0.08 -9.54 16 12 C -0.17 -2.73 8.18 -39.21 -0.32 -3.05 16 13 C 0.21 3.21 6.37 -83.72 -0.53 2.68 16 14 N -0.69 -10.51 4.87 -14.24 -0.07 -10.58 16 15 C 0.69 13.53 8.40 -86.92 -0.73 12.80 16 16 O -0.58 -13.26 13.12 5.29 0.07 -13.19 16 17 N -0.72 -14.30 5.07 -59.81 -0.30 -14.60 16 18 C 0.28 6.84 2.42 -69.08 -0.17 6.67 16 19 H 0.06 1.59 7.53 -51.93 -0.39 1.20 16 20 C -0.14 -3.42 9.36 37.16 0.35 -3.07 16 21 C -0.54 -13.75 8.66 -34.44 -0.30 -14.04 16 22 H 0.06 1.50 7.73 -52.49 -0.41 1.10 16 23 C 0.07 1.81 5.18 -17.82 -0.09 1.71 16 24 N -0.88 -24.30 12.11 55.43 0.67 -23.63 16 25 Si 0.90 20.10 29.55 -169.99 -5.02 15.08 16 26 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 27 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 28 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 31 H 0.06 0.63 7.07 -51.93 -0.37 0.26 16 32 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 33 H 0.15 2.44 5.26 -52.49 -0.28 2.17 16 34 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.10 1.09 8.12 -51.93 -0.42 0.67 16 36 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.43 2.98 8.96 -40.82 -0.37 2.61 16 39 H 0.16 2.83 5.05 -52.48 -0.26 2.57 16 40 H 0.40 4.80 7.63 -40.82 -0.31 4.49 16 41 H 0.39 6.54 8.54 -40.82 -0.35 6.19 16 42 H 0.07 1.92 6.78 -51.93 -0.35 1.57 16 43 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 368.89 15.07 5.56 5.56 Total: -1.00 -33.54 368.89 -10.00 -43.54 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: -6.02 Total: 13.93 kcal Atomic # 6 Polarization: 13.03 SS G_CDS: -4.17 Total: 8.86 kcal Atomic # 7 Polarization: -63.75 SS G_CDS: -0.49 Total: -64.24 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: 0.15 Total: -22.73 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.54 -10.00 -43.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786262283.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.374 kcal (2) G-P(sol) polarization free energy of solvation -33.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds