Wall clock time and date at job start Tue Mar 31 2020 16:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38177 * 119.96910 * 2 1 4 4 C 1.38134 * 120.14020 * 180.25455 * 3 2 1 5 5 C 1.38937 * 120.06901 * 359.44518 * 4 3 2 6 6 N 1.39938 * 120.03694 * 180.29605 * 5 4 3 7 7 C 1.47053 * 125.41354 * 174.29820 * 6 5 4 8 8 C 1.54107 * 103.86420 * 179.87286 * 7 6 5 9 9 N 1.47049 * 103.86237 * 0.37525 * 8 7 6 10 10 C 1.33952 * 109.18025 * 359.75163 * 9 8 7 11 11 O 1.21579 * 123.04240 * 180.02562 * 10 9 8 12 12 C 1.38722 * 119.92830 * 0.28259 * 5 4 3 13 13 C 1.38755 * 119.86390 * 359.97438 * 12 5 4 14 14 N 1.39941 * 120.03744 * 179.97438 * 13 12 5 15 15 C 1.34779 * 120.00036 * 330.17014 * 14 13 12 16 16 O 1.21586 * 119.99430 * 4.63173 * 15 14 13 17 17 N 1.34777 * 120.00351 * 184.62574 * 15 14 13 18 18 C 1.46497 * 119.99973 * 180.02562 * 17 15 14 19 19 H 1.09000 * 109.47180 * 34.99963 * 18 17 15 20 20 C 1.52999 * 109.46813 * 274.99967 * 18 17 15 21 21 C 1.50701 * 109.46825 * 155.00287 * 18 17 15 22 22 H 1.07994 * 120.00165 * 5.38569 * 21 18 17 23 23 C 1.37880 * 119.99649 * 185.38999 * 21 18 17 24 24 N 1.31513 * 119.99928 * 8.62780 * 23 21 18 25 25 Si 1.86802 * 119.99986 * 188.63525 * 23 21 18 26 26 H 1.48496 * 109.47346 * 94.98573 * 25 23 21 27 27 H 1.48494 * 109.47246 * 214.98947 * 25 23 21 28 28 H 1.48502 * 109.46745 * 334.98808 * 25 23 21 29 29 H 1.09002 * 109.47573 * 270.29536 * 1 2 3 30 30 H 1.09006 * 109.46867 * 30.29294 * 1 2 3 31 31 H 1.09002 * 109.47251 * 150.29313 * 1 2 3 32 32 H 1.08006 * 119.93043 * 359.97438 * 3 2 1 33 33 H 1.07998 * 119.96570 * 179.72631 * 4 3 2 34 34 H 1.08998 * 110.54782 * 298.59746 * 7 6 5 35 35 H 1.09002 * 110.54698 * 61.40697 * 7 6 5 36 36 H 1.09001 * 110.75780 * 241.67543 * 8 7 6 37 37 H 1.08998 * 110.46110 * 118.92796 * 8 7 6 38 38 H 0.97003 * 125.41147 * 179.76111 * 9 8 7 39 39 H 1.08003 * 120.06593 * 179.97438 * 12 5 4 40 40 H 0.97007 * 120.00536 * 150.17191 * 14 13 12 41 41 H 0.97007 * 119.99620 * 0.02562 * 17 15 14 42 42 H 1.09003 * 109.47018 * 183.79107 * 20 18 17 43 43 H 1.09004 * 109.47511 * 303.78765 * 20 18 17 44 44 H 1.09002 * 109.47551 * 63.79161 * 20 18 17 45 45 H 0.96999 * 119.99649 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1970 0.0000 4 6 3.5786 1.2011 -0.0053 5 6 4.2783 0.0009 0.0010 6 7 5.6777 0.0059 0.0019 7 6 6.5340 -1.1830 0.1273 8 6 7.9654 -0.6153 0.0659 9 7 7.7636 0.8342 -0.0783 10 6 6.4500 1.0951 -0.1056 11 8 5.9995 2.2187 -0.2181 12 6 3.5883 -1.2025 0.0067 13 6 2.2007 -1.2034 0.0066 14 7 1.5009 -2.4152 0.0118 15 6 2.0409 -3.5076 -0.5641 16 8 3.1698 -3.4628 -1.0133 17 7 1.3295 -4.6498 -0.6418 18 6 1.9166 -5.8373 -1.2673 19 1 2.9845 -5.8712 -1.0515 20 6 1.7040 -5.7741 -2.7811 21 6 1.2535 -7.0741 -0.7180 22 1 0.4152 -6.9829 -0.0434 23 6 1.7173 -8.3220 -1.0767 24 7 2.8365 -8.4368 -1.7578 25 14 0.7559 -9.8496 -0.5955 26 1 -0.1336 -10.2481 -1.7158 27 1 1.7008 -10.9553 -0.2963 28 1 -0.0639 -9.5596 0.6083 29 1 -0.3634 0.0053 1.0276 30 1 -0.3633 0.8874 -0.5184 31 1 -0.3634 -0.8926 -0.5093 32 1 1.6556 2.1314 -0.0004 33 1 4.1152 2.1384 -0.0098 34 1 6.3587 -1.6819 1.0804 35 1 6.3606 -1.8686 -0.7022 36 1 8.5027 -1.0143 -0.7945 37 1 8.5030 -0.8369 0.9878 38 1 8.4696 1.4962 -0.1434 39 1 4.1300 -2.1369 0.0111 40 1 0.6272 -2.4691 0.4298 41 1 0.4287 -4.6854 -0.2836 42 1 2.0807 -6.6886 -3.2394 43 1 0.6399 -5.6725 -2.9947 44 1 2.2398 -4.9165 -3.1879 45 1 3.1626 -9.3147 -2.0104 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000786262283.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:48:50 Heat of formation + Delta-G solvation = -32.059909 kcal Electronic energy + Delta-G solvation = -28448.438931 eV Core-core repulsion = 24465.625115 eV Total energy + Delta-G solvation = -3982.813815 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.56867 -41.57264 -39.72418 -37.70357 -36.96019 -36.24080 -34.93046 -34.28025 -32.38077 -31.46503 -30.09288 -29.82196 -27.41119 -27.25959 -24.97794 -23.73824 -23.47966 -22.64523 -21.52244 -21.25306 -19.79089 -19.26366 -18.33673 -17.91332 -17.76047 -17.07868 -16.92443 -16.49771 -16.35970 -16.03163 -15.46921 -15.36905 -15.19466 -14.96877 -14.82974 -14.59107 -14.46842 -14.32196 -13.92279 -13.83763 -13.35531 -13.18544 -13.08262 -12.90358 -12.83458 -12.67900 -12.61554 -12.45955 -12.34623 -12.11001 -11.67994 -11.19670 -11.12382 -10.86344 -10.83655 -10.56186 -10.20235 -9.84702 -9.20186 -8.62268 -8.18639 -6.31785 0.30459 0.42882 1.34434 1.46702 1.47756 1.57764 1.77826 1.88684 2.21943 2.43840 2.80558 2.90466 3.14392 3.38638 3.42298 3.78957 4.00598 4.07160 4.12230 4.29207 4.37865 4.55159 4.57137 4.66129 4.72360 4.79893 4.83255 4.90997 4.91981 4.93281 5.06892 5.17250 5.28135 5.41336 5.45133 5.49247 5.56527 5.61815 5.65070 5.68730 5.87572 6.03353 6.06049 6.19016 6.28387 6.34183 6.76623 7.23673 7.34965 7.35872 7.68273 8.90457 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014371 B = 0.002950 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.905186 B = 9488.887672 C =11070.144094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.142 4.142 3 C -0.068 4.068 4 C -0.189 4.189 5 C 0.184 3.816 6 N -0.573 5.573 7 C 0.074 3.926 8 C 0.101 3.899 9 N -0.722 5.722 10 C 0.690 3.310 11 O -0.609 6.609 12 C -0.182 4.182 13 C 0.185 3.815 14 N -0.669 5.669 15 C 0.692 3.308 16 O -0.618 6.618 17 N -0.713 5.713 18 C 0.289 3.711 19 H 0.007 0.993 20 C -0.129 4.129 21 C -0.546 4.546 22 H 0.075 0.925 23 C 0.018 3.982 24 N -0.917 5.917 25 Si 0.968 3.032 26 H -0.274 1.274 27 H -0.288 1.288 28 H -0.261 1.261 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.158 0.842 33 H 0.144 0.856 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.111 0.889 37 H 0.119 0.881 38 H 0.443 0.557 39 H 0.133 0.867 40 H 0.422 0.578 41 H 0.404 0.596 42 H 0.051 0.949 43 H 0.046 0.954 44 H 0.014 0.986 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.237 16.424 6.426 17.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.146 4.146 3 C -0.087 4.087 4 C -0.210 4.210 5 C 0.089 3.911 6 N -0.299 5.299 7 C -0.048 4.048 8 C -0.023 4.023 9 N -0.385 5.385 10 C 0.390 3.610 11 O -0.490 6.490 12 C -0.206 4.206 13 C 0.088 3.912 14 N -0.318 5.318 15 C 0.393 3.607 16 O -0.499 6.499 17 N -0.365 5.365 18 C 0.185 3.815 19 H 0.025 0.975 20 C -0.188 4.188 21 C -0.585 4.585 22 H 0.093 0.907 23 C -0.183 4.183 24 N -0.555 5.555 25 Si 0.793 3.207 26 H -0.200 1.200 27 H -0.214 1.214 28 H -0.185 1.185 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.082 0.918 32 H 0.175 0.825 33 H 0.162 0.838 34 H 0.116 0.884 35 H 0.102 0.898 36 H 0.129 0.871 37 H 0.137 0.863 38 H 0.288 0.712 39 H 0.151 0.849 40 H 0.260 0.740 41 H 0.239 0.761 42 H 0.070 0.930 43 H 0.065 0.935 44 H 0.033 0.967 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.075 16.719 5.861 17.981 hybrid contribution -0.354 -1.017 0.177 1.092 sum 2.721 15.702 6.039 17.041 Atomic orbital electron populations 1.20737 0.88372 1.03708 1.03512 1.19899 0.97893 0.90494 1.06269 1.20972 0.92476 0.98016 0.97222 1.21573 0.95357 0.97580 1.06475 1.17369 0.79983 0.94203 0.99547 1.44570 1.03974 1.08960 1.72424 1.22831 0.89144 0.88144 1.04671 1.22638 0.94759 0.78713 1.06197 1.45042 1.04931 1.10555 1.77937 1.16088 0.83254 0.83628 0.77980 1.90798 1.76216 1.22936 1.59055 1.20910 0.94040 0.97155 1.08465 1.17221 0.90138 0.84804 0.99014 1.42451 1.22887 1.06906 1.59546 1.16256 0.84543 0.80959 0.78959 1.90800 1.19650 1.83967 1.55497 1.45455 1.18544 1.10025 1.62485 1.18250 0.93263 0.80712 0.89267 0.97475 1.21867 0.99211 0.98979 0.98747 1.21512 1.16821 0.90579 1.29539 0.90728 1.25754 0.95303 1.02191 0.95019 1.70122 1.20780 1.24968 1.39624 0.85390 0.78261 0.78195 0.78838 1.19982 1.21414 1.18549 0.89443 0.89686 0.91798 0.82462 0.83833 0.88401 0.89797 0.87122 0.86281 0.71237 0.84913 0.73955 0.76138 0.93036 0.93490 0.96716 0.92573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.75 9.45 71.24 0.67 -1.08 16 2 C -0.14 -3.47 5.90 -19.72 -0.12 -3.59 16 3 C -0.07 -1.66 9.69 22.23 0.22 -1.45 16 4 C -0.19 -5.70 9.29 22.41 0.21 -5.49 16 5 C 0.18 5.95 6.62 38.13 0.25 6.20 16 6 N -0.57 -16.41 3.16 -646.80 -2.04 -18.45 16 7 C 0.07 1.58 6.48 86.65 0.56 2.15 16 8 C 0.10 1.27 8.06 86.65 0.70 1.97 16 9 N -0.72 -12.74 6.37 -477.34 -3.04 -15.78 16 10 C 0.69 19.34 8.52 179.57 1.53 20.87 16 11 O -0.61 -21.01 14.75 -3.96 -0.06 -21.06 16 12 C -0.18 -6.26 8.18 22.51 0.18 -6.07 16 13 C 0.19 5.69 6.37 38.13 0.24 5.93 16 14 N -0.67 -19.90 4.87 -317.24 -1.54 -21.44 16 15 C 0.69 27.36 8.40 179.05 1.50 28.86 16 16 O -0.62 -29.51 13.12 -3.99 -0.05 -29.56 16 17 N -0.71 -28.29 5.07 -461.42 -2.34 -30.64 16 18 C 0.29 14.42 2.42 44.25 0.11 14.52 16 19 H 0.01 0.43 7.53 -2.39 -0.02 0.42 16 20 C -0.13 -6.28 9.36 71.98 0.67 -5.61 16 21 C -0.55 -27.85 8.66 25.60 0.22 -27.62 16 22 H 0.07 3.53 7.73 -2.91 -0.02 3.51 16 23 C 0.02 0.94 5.18 84.66 0.44 1.37 16 24 N -0.92 -51.67 12.11 21.45 0.26 -51.41 16 25 Si 0.97 40.78 29.55 68.60 2.03 42.81 16 26 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 27 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 28 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 29 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.08 1.14 8.09 -2.38 -0.02 1.12 16 31 H 0.06 1.06 7.07 -2.39 -0.02 1.05 16 32 H 0.16 2.78 8.06 -2.91 -0.02 2.76 16 33 H 0.14 4.68 5.26 -2.91 -0.02 4.67 16 34 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.08 2.01 8.12 -2.39 -0.02 1.99 16 36 H 0.11 0.97 8.14 -2.39 -0.02 0.96 16 37 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.44 5.54 8.96 -92.71 -0.83 4.71 16 39 H 0.13 5.18 5.05 -2.91 -0.01 5.16 16 40 H 0.42 9.20 7.63 -92.70 -0.71 8.50 16 41 H 0.40 13.08 8.54 -92.70 -0.79 12.29 16 42 H 0.05 2.72 6.78 -2.39 -0.02 2.71 16 43 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 44 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 Total: -1.00 -75.97 368.89 -0.66 -76.63 By element: Atomic # 1 Polarization: 39.21 SS G_CDS: -1.26 Total: 37.95 kcal Atomic # 6 Polarization: 23.56 SS G_CDS: 7.40 Total: 30.96 kcal Atomic # 7 Polarization: -129.01 SS G_CDS: -8.71 Total: -137.72 kcal Atomic # 8 Polarization: -50.51 SS G_CDS: -0.11 Total: -50.63 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.81 kcal Total: -75.97 -0.66 -76.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786262283.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.568 kcal (2) G-P(sol) polarization free energy of solvation -75.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds