Wall clock time and date at job start Tue Mar 31 2020 16:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38185 * 119.97026 * 2 1 4 4 C 1.38135 * 120.14016 * 180.25542 * 3 2 1 5 5 C 1.38936 * 120.07037 * 359.45164 * 4 3 2 6 6 N 1.39944 * 120.03864 * 180.29742 * 5 4 3 7 7 C 1.47057 * 125.41169 * 174.25684 * 6 5 4 8 8 C 1.54100 * 103.86047 * 179.86968 * 7 6 5 9 9 N 1.47054 * 103.86453 * 0.37641 * 8 7 6 10 10 C 1.33948 * 125.40655 * 354.56489 * 6 5 4 11 11 O 1.21587 * 123.04447 * 359.97438 * 10 6 5 12 12 C 1.38722 * 119.92769 * 0.27204 * 5 4 3 13 13 C 1.38760 * 119.86470 * 0.02562 * 12 5 4 14 14 N 1.39946 * 120.03544 * 180.02562 * 13 12 5 15 15 C 1.34776 * 120.00282 * 334.39523 * 14 13 12 16 16 O 1.21587 * 119.99863 * 3.86167 * 15 14 13 17 17 N 1.34774 * 120.00026 * 183.86651 * 15 14 13 18 18 C 1.46494 * 120.00056 * 359.97438 * 17 15 14 19 19 C 1.46502 * 119.99557 * 179.97438 * 17 15 14 20 20 C 1.50703 * 109.47255 * 90.00422 * 19 17 15 21 21 H 1.07999 * 119.99484 * 359.97438 * 20 19 17 22 22 C 1.37870 * 120.00092 * 179.97438 * 20 19 17 23 23 N 1.31522 * 120.00023 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00066 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47075 * 59.99482 * 24 22 20 26 26 H 1.48497 * 109.46994 * 180.02562 * 24 22 20 27 27 H 1.48505 * 109.46808 * 299.99516 * 24 22 20 28 28 H 1.08996 * 109.47207 * 270.30069 * 1 2 3 29 29 H 1.09005 * 109.46704 * 30.29644 * 1 2 3 30 30 H 1.08998 * 109.47532 * 150.29463 * 1 2 3 31 31 H 1.08000 * 119.92617 * 359.97438 * 3 2 1 32 32 H 1.08004 * 119.96532 * 179.72520 * 4 3 2 33 33 H 1.09000 * 110.54634 * 298.59424 * 7 6 5 34 34 H 1.08997 * 110.54642 * 61.40755 * 7 6 5 35 35 H 1.08994 * 110.75814 * 241.67841 * 8 7 6 36 36 H 1.09004 * 110.46354 * 118.92746 * 8 7 6 37 37 H 0.97004 * 125.41128 * 179.75082 * 9 8 7 38 38 H 1.08005 * 120.06602 * 179.97438 * 12 5 4 39 39 H 0.96998 * 119.99604 * 154.39180 * 14 13 12 40 40 H 1.09005 * 109.47021 * 89.99986 * 18 17 15 41 41 H 1.08996 * 109.47165 * 209.99570 * 18 17 15 42 42 H 1.08992 * 109.47292 * 330.00198 * 18 17 15 43 43 H 1.09007 * 109.46540 * 210.00060 * 19 17 15 44 44 H 1.08996 * 109.47502 * 329.99325 * 19 17 15 45 45 H 0.96999 * 119.99835 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1971 0.0000 4 6 3.5786 1.2012 -0.0053 5 6 4.2784 0.0009 0.0008 6 7 5.6778 0.0059 0.0017 7 6 6.5340 -1.1830 0.1278 8 6 7.9653 -0.6153 0.0660 9 7 7.7636 0.8341 -0.0790 10 6 6.4501 1.0950 -0.1064 11 8 5.9995 2.2186 -0.2195 12 6 3.5883 -1.2025 0.0066 13 6 2.2007 -1.2033 0.0057 14 7 1.5009 -2.4153 0.0120 15 6 2.0758 -3.5280 -0.4857 16 8 3.2270 -3.4951 -0.8758 17 7 1.3746 -4.6771 -0.5513 18 6 -0.0122 -4.7168 -0.0809 19 6 1.9995 -5.8865 -1.0929 20 6 2.6649 -6.6508 0.0225 21 1 2.6266 -6.2732 1.0336 22 6 3.3226 -7.8320 -0.2478 23 7 3.3687 -8.2921 -1.4791 24 14 4.1480 -8.7790 1.1346 25 1 3.1329 -9.1578 2.1501 26 1 4.7812 -10.0049 0.5856 27 1 5.1868 -7.9267 1.7670 28 1 -0.3633 0.0054 1.0276 29 1 -0.3633 0.8874 -0.5185 30 1 -0.3634 -0.8926 -0.5092 31 1 1.6556 2.1314 -0.0004 32 1 4.1153 2.1384 -0.0098 33 1 6.3588 -1.6813 1.0813 34 1 6.3606 -1.8691 -0.7012 35 1 8.5026 -1.0148 -0.7941 36 1 8.5031 -0.8364 0.9881 37 1 8.4696 1.4961 -0.1444 38 1 4.1300 -2.1368 0.0109 39 1 0.6022 -2.4544 0.3747 40 1 -0.6825 -4.4738 -0.9054 41 1 -0.2411 -5.7154 0.2912 42 1 -0.1447 -3.9908 0.7211 43 1 1.2374 -6.5120 -1.5578 44 1 2.7448 -5.6080 -1.8378 45 1 3.8311 -9.1233 -1.6692 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786287713.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:48:31 Heat of formation + Delta-G solvation = 7.657287 kcal Electronic energy + Delta-G solvation = -28781.073074 eV Core-core repulsion = 24799.981526 eV Total energy + Delta-G solvation = -3981.091549 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.52002 -40.27650 -38.42899 -36.60066 -35.33833 -34.95825 -33.73894 -32.56700 -31.37592 -29.59745 -29.05472 -27.76053 -26.47188 -25.78981 -23.93408 -22.98752 -22.43271 -21.75096 -20.20033 -19.38920 -18.32227 -17.41550 -17.04966 -16.81095 -16.57466 -15.77886 -15.61410 -15.04166 -14.98956 -14.55733 -14.39128 -14.08242 -14.00545 -13.78257 -13.64214 -13.44513 -13.07800 -13.06309 -12.77663 -12.48492 -12.31099 -12.21991 -11.96068 -11.82427 -11.63229 -11.35289 -11.22353 -10.97180 -10.61445 -10.46586 -10.18437 -9.96188 -9.76542 -9.67608 -9.33901 -9.11323 -8.47932 -8.07453 -7.72393 -7.42697 -6.08689 -4.13902 1.47305 1.67373 2.34162 2.98674 3.17104 3.27835 3.32592 3.35621 3.64688 3.71681 4.13861 4.18840 4.34458 4.47924 4.74448 4.79516 5.06561 5.10247 5.22511 5.25117 5.38382 5.40212 5.44539 5.54939 5.60489 5.63443 5.68707 5.79779 5.90819 5.99298 6.05889 6.08635 6.40954 6.50485 6.65435 6.67860 6.85123 6.89221 6.95359 7.30871 7.35101 7.42018 7.45986 7.62471 7.88807 8.17795 8.38191 8.51917 8.86591 9.16810 9.51549 10.99039 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010692 B = 0.003782 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2618.065100 B = 7401.319523 C = 9625.746502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.156 4.156 3 C -0.073 4.073 4 C -0.181 4.181 5 C 0.199 3.801 6 N -0.564 5.564 7 C 0.083 3.917 8 C 0.093 3.907 9 N -0.739 5.739 10 C 0.701 3.299 11 O -0.573 6.573 12 C -0.173 4.173 13 C 0.208 3.792 14 N -0.689 5.689 15 C 0.698 3.302 16 O -0.567 6.567 17 N -0.611 5.611 18 C 0.083 3.917 19 C 0.260 3.740 20 C -0.528 4.528 21 H 0.057 0.943 22 C 0.062 3.938 23 N -0.894 5.894 24 Si 0.898 3.102 25 H -0.277 1.277 26 H -0.286 1.286 27 H -0.277 1.277 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.125 0.875 32 H 0.154 0.846 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.431 0.569 38 H 0.165 0.835 39 H 0.403 0.597 40 H 0.046 0.954 41 H 0.080 0.920 42 H 0.049 0.951 43 H 0.035 0.965 44 H 0.046 0.954 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.364 15.608 4.376 16.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.161 4.161 3 C -0.092 4.092 4 C -0.202 4.202 5 C 0.105 3.895 6 N -0.290 5.290 7 C -0.040 4.040 8 C -0.032 4.032 9 N -0.401 5.401 10 C 0.402 3.598 11 O -0.451 6.451 12 C -0.197 4.197 13 C 0.110 3.890 14 N -0.337 5.337 15 C 0.400 3.600 16 O -0.444 6.444 17 N -0.346 5.346 18 C -0.062 4.062 19 C 0.141 3.859 20 C -0.567 4.567 21 H 0.075 0.925 22 C -0.140 4.140 23 N -0.533 5.533 24 Si 0.726 3.274 25 H -0.203 1.203 26 H -0.212 1.212 27 H -0.202 1.202 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.143 0.857 32 H 0.171 0.829 33 H 0.111 0.889 34 H 0.118 0.882 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.273 0.727 38 H 0.182 0.818 39 H 0.240 0.760 40 H 0.065 0.935 41 H 0.098 0.902 42 H 0.068 0.932 43 H 0.052 0.948 44 H 0.064 0.936 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.933 15.841 3.874 16.335 hybrid contribution 0.389 -0.654 0.918 1.192 sum 1.322 15.188 4.793 15.981 Atomic orbital electron populations 1.20623 0.91344 1.02601 1.01767 1.19515 0.95863 0.91706 1.08985 1.20576 0.93182 0.96577 0.98856 1.21465 0.94236 0.98261 1.06232 1.17240 0.78888 0.94293 0.99099 1.44431 1.04168 1.07864 1.72552 1.22638 0.87415 0.88857 1.05120 1.22430 0.96812 0.80509 1.03474 1.45082 1.06357 1.09161 1.79468 1.15809 0.81977 0.84160 0.77878 1.90837 1.75256 1.21648 1.57357 1.21285 0.93332 0.98216 1.06820 1.17023 0.90367 0.84108 0.97540 1.42977 1.19419 1.07008 1.64325 1.15932 0.84943 0.80027 0.79105 1.90772 1.15820 1.83587 1.54230 1.47524 1.12379 1.10093 1.64618 1.21608 0.83497 1.03136 0.97929 1.19256 0.93463 0.78602 0.94610 1.21410 1.34515 1.06259 0.94547 0.92522 1.24917 0.96058 0.97283 0.95712 1.69924 1.43143 1.21675 1.18574 0.86564 0.79751 0.79107 0.82008 1.20282 1.21169 1.20219 0.91683 0.91445 0.92097 0.85708 0.82919 0.88865 0.88226 0.89365 0.89536 0.72737 0.81800 0.75973 0.93531 0.90164 0.93197 0.94751 0.93621 0.92620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 9.44 36.00 0.34 -0.73 16 2 C -0.16 -2.13 5.90 -104.40 -0.62 -2.75 16 3 C -0.07 -0.98 9.69 -39.64 -0.38 -1.36 16 4 C -0.18 -2.81 9.29 -39.36 -0.37 -3.17 16 5 C 0.20 3.25 6.62 -83.72 -0.55 2.70 16 6 N -0.56 -8.23 3.16 -118.27 -0.37 -8.60 16 7 C 0.08 0.94 6.48 -3.16 -0.02 0.92 16 8 C 0.09 0.73 8.06 -3.17 -0.03 0.71 16 9 N -0.74 -7.33 6.37 -64.70 -0.41 -7.74 16 10 C 0.70 10.12 8.52 -88.39 -0.75 9.37 16 11 O -0.57 -9.93 14.75 5.29 0.08 -9.85 16 12 C -0.17 -3.03 8.23 -39.21 -0.32 -3.35 16 13 C 0.21 3.37 6.43 -83.72 -0.54 2.84 16 14 N -0.69 -11.15 4.84 -14.24 -0.07 -11.22 16 15 C 0.70 14.40 8.17 -86.92 -0.71 13.69 16 16 O -0.57 -13.66 12.84 5.29 0.07 -13.59 16 17 N -0.61 -12.54 2.86 -188.75 -0.54 -13.08 16 18 C 0.08 1.23 10.24 59.84 0.61 1.84 16 19 C 0.26 6.56 5.16 -5.19 -0.03 6.53 16 20 C -0.53 -14.44 9.39 -34.44 -0.32 -14.77 16 21 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 22 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 23 N -0.89 -25.78 13.29 55.43 0.74 -25.04 16 24 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 27 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 30 H 0.06 0.60 6.99 -51.93 -0.36 0.24 16 31 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 32 H 0.15 2.51 5.26 -52.48 -0.28 2.23 16 33 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.10 1.21 8.12 -51.93 -0.42 0.79 16 35 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.43 3.22 8.96 -40.82 -0.37 2.85 16 38 H 0.16 3.21 4.75 -52.48 -0.25 2.96 16 39 H 0.40 5.21 5.12 -40.82 -0.21 5.00 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 42 H 0.05 0.59 6.31 -51.93 -0.33 0.27 16 43 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 44 H 0.05 1.30 7.42 -51.93 -0.39 0.92 16 45 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 368.08 15.07 5.55 5.55 Total: -1.00 -35.25 368.08 -9.71 -44.96 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -5.94 Total: 8.41 kcal Atomic # 6 Polarization: 17.87 SS G_CDS: -3.78 Total: 14.09 kcal Atomic # 7 Polarization: -65.02 SS G_CDS: -0.66 Total: -65.68 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: 0.15 Total: -23.44 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.25 -9.71 -44.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786287713.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.617 kcal (2) G-P(sol) polarization free energy of solvation -35.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds