Wall clock time and date at job start Tue Mar 31 2020 16:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38185 * 119.97026 * 2 1 4 4 C 1.38135 * 120.14016 * 180.25542 * 3 2 1 5 5 C 1.38936 * 120.07037 * 359.45164 * 4 3 2 6 6 N 1.39944 * 120.03864 * 180.29742 * 5 4 3 7 7 C 1.47057 * 125.41169 * 174.25684 * 6 5 4 8 8 C 1.54100 * 103.86047 * 179.86968 * 7 6 5 9 9 N 1.47054 * 103.86453 * 0.37641 * 8 7 6 10 10 C 1.33948 * 125.40655 * 354.56489 * 6 5 4 11 11 O 1.21587 * 123.04447 * 359.97438 * 10 6 5 12 12 C 1.38722 * 119.92769 * 0.27204 * 5 4 3 13 13 C 1.38760 * 119.86470 * 0.02562 * 12 5 4 14 14 N 1.39946 * 120.03544 * 180.02562 * 13 12 5 15 15 C 1.34776 * 120.00282 * 334.39523 * 14 13 12 16 16 O 1.21587 * 119.99863 * 3.86167 * 15 14 13 17 17 N 1.34774 * 120.00026 * 183.86651 * 15 14 13 18 18 C 1.46494 * 120.00056 * 359.97438 * 17 15 14 19 19 C 1.46502 * 119.99557 * 179.97438 * 17 15 14 20 20 C 1.50703 * 109.47255 * 90.00422 * 19 17 15 21 21 H 1.07999 * 119.99484 * 359.97438 * 20 19 17 22 22 C 1.37870 * 120.00092 * 179.97438 * 20 19 17 23 23 N 1.31522 * 120.00023 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00066 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47075 * 59.99482 * 24 22 20 26 26 H 1.48497 * 109.46994 * 180.02562 * 24 22 20 27 27 H 1.48505 * 109.46808 * 299.99516 * 24 22 20 28 28 H 1.08996 * 109.47207 * 270.30069 * 1 2 3 29 29 H 1.09005 * 109.46704 * 30.29644 * 1 2 3 30 30 H 1.08998 * 109.47532 * 150.29463 * 1 2 3 31 31 H 1.08000 * 119.92617 * 359.97438 * 3 2 1 32 32 H 1.08004 * 119.96532 * 179.72520 * 4 3 2 33 33 H 1.09000 * 110.54634 * 298.59424 * 7 6 5 34 34 H 1.08997 * 110.54642 * 61.40755 * 7 6 5 35 35 H 1.08994 * 110.75814 * 241.67841 * 8 7 6 36 36 H 1.09004 * 110.46354 * 118.92746 * 8 7 6 37 37 H 0.97004 * 125.41128 * 179.75082 * 9 8 7 38 38 H 1.08005 * 120.06602 * 179.97438 * 12 5 4 39 39 H 0.96998 * 119.99604 * 154.39180 * 14 13 12 40 40 H 1.09005 * 109.47021 * 89.99986 * 18 17 15 41 41 H 1.08996 * 109.47165 * 209.99570 * 18 17 15 42 42 H 1.08992 * 109.47292 * 330.00198 * 18 17 15 43 43 H 1.09007 * 109.46540 * 210.00060 * 19 17 15 44 44 H 1.08996 * 109.47502 * 329.99325 * 19 17 15 45 45 H 0.96999 * 119.99835 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1971 0.0000 4 6 3.5786 1.2012 -0.0053 5 6 4.2784 0.0009 0.0008 6 7 5.6778 0.0059 0.0017 7 6 6.5340 -1.1830 0.1278 8 6 7.9653 -0.6153 0.0660 9 7 7.7636 0.8341 -0.0790 10 6 6.4501 1.0950 -0.1064 11 8 5.9995 2.2186 -0.2195 12 6 3.5883 -1.2025 0.0066 13 6 2.2007 -1.2033 0.0057 14 7 1.5009 -2.4153 0.0120 15 6 2.0758 -3.5280 -0.4857 16 8 3.2270 -3.4951 -0.8758 17 7 1.3746 -4.6771 -0.5513 18 6 -0.0122 -4.7168 -0.0809 19 6 1.9995 -5.8865 -1.0929 20 6 2.6649 -6.6508 0.0225 21 1 2.6266 -6.2732 1.0336 22 6 3.3226 -7.8320 -0.2478 23 7 3.3687 -8.2921 -1.4791 24 14 4.1480 -8.7790 1.1346 25 1 3.1329 -9.1578 2.1501 26 1 4.7812 -10.0049 0.5856 27 1 5.1868 -7.9267 1.7670 28 1 -0.3633 0.0054 1.0276 29 1 -0.3633 0.8874 -0.5185 30 1 -0.3634 -0.8926 -0.5092 31 1 1.6556 2.1314 -0.0004 32 1 4.1153 2.1384 -0.0098 33 1 6.3588 -1.6813 1.0813 34 1 6.3606 -1.8691 -0.7012 35 1 8.5026 -1.0148 -0.7941 36 1 8.5031 -0.8364 0.9881 37 1 8.4696 1.4961 -0.1444 38 1 4.1300 -2.1368 0.0109 39 1 0.6022 -2.4544 0.3747 40 1 -0.6825 -4.4738 -0.9054 41 1 -0.2411 -5.7154 0.2912 42 1 -0.1447 -3.9908 0.7211 43 1 1.2374 -6.5120 -1.5578 44 1 2.7448 -5.6080 -1.8378 45 1 3.8311 -9.1233 -1.6692 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000786287713.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:48:29 Heat of formation + Delta-G solvation = -16.684629 kcal Electronic energy + Delta-G solvation = -28782.128619 eV Core-core repulsion = 24799.981526 eV Total energy + Delta-G solvation = -3982.147093 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.58142 -41.67850 -39.74247 -37.70802 -36.78936 -36.39439 -35.07083 -34.49775 -32.38523 -30.95166 -29.99910 -29.49361 -27.55094 -27.23651 -25.37156 -24.40351 -23.49168 -22.99177 -21.39278 -20.86054 -19.51355 -18.75220 -18.59406 -18.28502 -17.77136 -17.07742 -16.90561 -16.54092 -16.48718 -16.11122 -15.39177 -15.32475 -15.07495 -15.02132 -14.90025 -14.61475 -14.45451 -14.29115 -13.93001 -13.86185 -13.50588 -13.35483 -13.19910 -13.12431 -12.88066 -12.78343 -12.63982 -12.54568 -12.43264 -12.14060 -11.80888 -11.67539 -11.17136 -10.87396 -10.70891 -10.60836 -10.21010 -9.59051 -9.14733 -8.61765 -8.18617 -6.33816 0.30624 0.43537 1.34097 1.39843 1.42834 1.50456 1.71949 1.87762 2.19419 2.41605 2.78967 2.91147 3.03894 3.11369 3.37578 3.75967 3.98973 4.07381 4.12093 4.27821 4.29467 4.36748 4.54446 4.56467 4.64837 4.66086 4.74968 4.78323 4.88672 4.92132 4.93610 4.99733 5.17225 5.22320 5.32720 5.45305 5.49250 5.56081 5.60464 5.68237 5.82011 6.04887 6.08320 6.10023 6.19807 6.33353 6.74506 7.04222 7.33065 7.34444 7.61380 8.87414 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.010692 B = 0.003782 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2618.065100 B = 7401.319523 C = 9625.746502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.144 4.144 3 C -0.066 4.066 4 C -0.190 4.190 5 C 0.185 3.815 6 N -0.573 5.573 7 C 0.074 3.926 8 C 0.102 3.898 9 N -0.722 5.722 10 C 0.691 3.309 11 O -0.609 6.609 12 C -0.193 4.193 13 C 0.185 3.815 14 N -0.667 5.667 15 C 0.692 3.308 16 O -0.612 6.612 17 N -0.618 5.618 18 C 0.076 3.924 19 C 0.277 3.723 20 C -0.542 4.542 21 H 0.053 0.947 22 C 0.012 3.988 23 N -0.927 5.927 24 Si 0.965 3.035 25 H -0.263 1.263 26 H -0.280 1.280 27 H -0.276 1.276 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.160 0.840 32 H 0.145 0.855 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.111 0.889 36 H 0.119 0.881 37 H 0.444 0.556 38 H 0.137 0.863 39 H 0.420 0.580 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.028 0.972 44 H 0.001 0.999 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.584 16.512 5.975 17.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.148 4.148 3 C -0.085 4.085 4 C -0.212 4.212 5 C 0.090 3.910 6 N -0.299 5.299 7 C -0.048 4.048 8 C -0.022 4.022 9 N -0.384 5.384 10 C 0.391 3.609 11 O -0.489 6.489 12 C -0.216 4.216 13 C 0.088 3.912 14 N -0.317 5.317 15 C 0.394 3.606 16 O -0.492 6.492 17 N -0.353 5.353 18 C -0.066 4.066 19 C 0.155 3.845 20 C -0.581 4.581 21 H 0.071 0.929 22 C -0.188 4.188 23 N -0.567 5.567 24 Si 0.790 3.210 25 H -0.188 1.188 26 H -0.205 1.205 27 H -0.202 1.202 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.082 0.918 31 H 0.177 0.823 32 H 0.162 0.838 33 H 0.113 0.887 34 H 0.101 0.899 35 H 0.129 0.871 36 H 0.137 0.863 37 H 0.288 0.712 38 H 0.154 0.846 39 H 0.261 0.739 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.103 0.897 43 H 0.046 0.954 44 H 0.019 0.981 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.037 16.765 5.505 17.646 hybrid contribution 0.667 -0.869 0.391 1.163 sum 0.630 15.896 5.896 16.966 Atomic orbital electron populations 1.20741 0.88201 1.03799 1.03560 1.19874 0.97972 0.90308 1.06657 1.20976 0.92407 0.98012 0.97065 1.21573 0.95415 0.97476 1.06695 1.17389 0.79947 0.94212 0.99441 1.44577 1.04032 1.08909 1.72387 1.22805 0.89275 0.88188 1.04523 1.22624 0.94640 0.78782 1.06186 1.45032 1.04951 1.10477 1.77938 1.16069 0.83230 0.83599 0.77967 1.90796 1.76210 1.22854 1.59089 1.21114 0.94259 0.97517 1.08729 1.17285 0.90197 0.84866 0.98857 1.42600 1.19864 1.05748 1.63524 1.16116 0.84503 0.80915 0.79070 1.90759 1.17927 1.84476 1.56000 1.47383 1.14415 1.08746 1.64745 1.21915 0.80557 1.04158 0.99984 1.18706 0.92362 0.80068 0.93350 1.21669 1.34979 1.06734 0.94729 0.92917 1.25790 0.96527 0.98270 0.98172 1.70043 1.43906 1.22178 1.20581 0.85508 0.78822 0.77633 0.79079 1.18753 1.20479 1.20178 0.89433 0.89417 0.91789 0.82258 0.83797 0.88717 0.89948 0.87084 0.86327 0.71187 0.84565 0.73911 0.90879 0.90612 0.89719 0.95356 0.98066 0.92413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.73 9.44 71.23 0.67 -1.06 16 2 C -0.14 -3.62 5.90 -19.72 -0.12 -3.74 16 3 C -0.07 -1.64 9.69 22.23 0.22 -1.43 16 4 C -0.19 -5.92 9.29 22.41 0.21 -5.72 16 5 C 0.19 6.27 6.62 38.13 0.25 6.53 16 6 N -0.57 -17.40 3.16 -646.81 -2.04 -19.44 16 7 C 0.07 1.77 6.48 86.65 0.56 2.33 16 8 C 0.10 1.46 8.06 86.65 0.70 2.16 16 9 N -0.72 -13.64 6.37 -477.34 -3.04 -16.69 16 10 C 0.69 20.22 8.52 179.57 1.53 21.75 16 11 O -0.61 -21.54 14.75 -3.99 -0.06 -21.59 16 12 C -0.19 -7.04 8.23 22.51 0.19 -6.86 16 13 C 0.19 5.97 6.43 38.13 0.25 6.22 16 14 N -0.67 -21.14 4.84 -317.24 -1.53 -22.67 16 15 C 0.69 29.20 8.17 179.06 1.46 30.66 16 16 O -0.61 -31.20 12.84 -3.99 -0.05 -31.25 16 17 N -0.62 -25.65 2.86 -869.33 -2.48 -28.13 16 18 C 0.08 2.14 10.24 127.77 1.31 3.44 16 19 C 0.28 14.51 5.16 85.63 0.44 14.96 16 20 C -0.54 -30.33 9.39 25.60 0.24 -30.09 16 21 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 22 C 0.01 0.65 5.46 84.65 0.46 1.11 16 23 N -0.93 -54.65 13.29 21.45 0.28 -54.36 16 24 Si 0.97 43.48 29.54 68.60 2.03 45.51 16 25 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 26 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 27 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 28 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.09 1.13 8.09 -2.38 -0.02 1.11 16 30 H 0.06 1.03 6.99 -2.39 -0.02 1.01 16 31 H 0.16 2.83 8.06 -2.91 -0.02 2.81 16 32 H 0.14 4.80 5.26 -2.91 -0.02 4.79 16 33 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.08 2.21 8.12 -2.39 -0.02 2.19 16 35 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.12 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.44 6.00 8.96 -92.71 -0.83 5.17 16 38 H 0.14 5.78 4.75 -2.91 -0.01 5.76 16 39 H 0.42 9.87 5.12 -92.71 -0.48 9.40 16 40 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 41 H 0.08 2.21 8.07 -2.39 -0.02 2.19 16 42 H 0.08 1.76 6.31 -2.39 -0.02 1.75 16 43 H 0.03 1.50 8.07 -2.38 -0.02 1.48 16 44 H 0.00 0.07 7.42 -2.39 -0.02 0.06 16 45 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -81.49 368.08 1.21 -80.28 By element: Atomic # 1 Polarization: 28.32 SS G_CDS: -0.25 Total: 28.06 kcal Atomic # 6 Polarization: 31.92 SS G_CDS: 8.37 Total: 40.29 kcal Atomic # 7 Polarization: -132.48 SS G_CDS: -8.82 Total: -141.29 kcal Atomic # 8 Polarization: -52.74 SS G_CDS: -0.11 Total: -52.85 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -81.49 1.21 -80.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786287713.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.599 kcal (2) G-P(sol) polarization free energy of solvation -81.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds