Wall clock time and date at job start Tue Mar 31 2020 17:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38236 * 120.42001 * 2 1 4 4 N 1.31857 * 120.75897 * 180.02562 * 3 2 1 5 5 C 1.31888 * 121.73079 * 359.97438 * 4 3 2 6 6 C 1.38178 * 120.76101 * 0.02748 * 5 4 3 7 7 C 1.50708 * 120.41406 * 179.97438 * 6 5 4 8 8 H 1.08993 * 109.86945 * 158.98095 * 7 6 5 9 9 C 1.54322 * 109.87867 * 279.99940 * 7 6 5 10 10 C 1.55153 * 102.94269 * 141.61359 * 9 7 6 11 11 C 1.54917 * 101.57995 * 324.49512 * 10 9 7 12 12 N 1.47020 * 109.88229 * 37.80576 * 7 6 5 13 13 C 1.34777 * 125.65143 * 61.67650 * 12 7 6 14 14 O 1.21588 * 119.99742 * 359.97438 * 13 12 7 15 15 N 1.34775 * 120.00019 * 179.97438 * 13 12 7 16 16 C 1.46503 * 119.99834 * 180.02562 * 15 13 12 17 17 C 1.50695 * 109.47206 * 180.02562 * 16 15 13 18 18 O 1.21293 * 119.99738 * 0.02562 * 17 16 15 19 19 N 1.34777 * 120.00352 * 179.97438 * 17 16 15 20 20 C 1.37093 * 120.00112 * 180.02562 * 19 17 16 21 21 H 1.07990 * 120.00531 * 0.02562 * 20 19 17 22 22 C 1.38958 * 119.99922 * 180.02562 * 20 19 17 23 23 N 1.31415 * 119.99878 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00122 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47525 * 59.99735 * 24 22 20 26 26 H 1.48499 * 109.46982 * 179.97438 * 24 22 20 27 27 H 1.48508 * 109.47039 * 299.99832 * 24 22 20 28 28 C 1.38627 * 120.41952 * 180.29458 * 2 1 3 29 29 H 1.09003 * 109.47222 * 89.99826 * 1 2 3 30 30 H 1.08993 * 109.47314 * 210.00540 * 1 2 3 31 31 H 1.08998 * 109.47003 * 330.00069 * 1 2 3 32 32 H 1.07991 * 119.61912 * 359.97438 * 3 2 1 33 33 H 1.07993 * 119.61477 * 180.02562 * 5 4 3 34 34 H 1.08997 * 110.72456 * 23.24598 * 9 7 6 35 35 H 1.09004 * 110.71864 * 259.97148 * 9 7 6 36 36 H 1.09005 * 111.00422 * 206.42378 * 10 9 7 37 37 H 1.08998 * 111.04242 * 82.58375 * 10 9 7 38 38 H 1.08998 * 110.36726 * 155.84993 * 11 10 9 39 39 H 1.09005 * 110.36534 * 278.17514 * 11 10 9 40 40 H 0.97000 * 120.00401 * 0.02562 * 15 13 12 41 41 H 1.09003 * 109.46966 * 300.00813 * 16 15 13 42 42 H 1.09001 * 109.46785 * 59.99963 * 16 15 13 43 43 H 0.97006 * 119.99818 * 0.02562 * 19 17 16 44 44 H 0.96998 * 119.99819 * 180.02562 * 23 22 20 45 45 H 1.08003 * 120.79210 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1921 0.0000 4 7 3.5255 1.1999 -0.0005 5 6 4.2257 0.0822 -0.0005 6 6 3.5948 -1.1471 -0.0006 7 6 4.4027 -2.4193 -0.0012 8 1 3.7937 -3.2451 0.3665 9 6 4.8962 -2.7269 -1.4307 10 6 6.3266 -3.2790 -1.1932 11 6 6.7953 -2.4215 0.0088 12 7 5.5932 -2.2560 0.8459 13 6 5.5866 -1.9984 2.1688 14 8 4.5307 -1.8814 2.7601 15 7 6.7505 -1.8706 2.8362 16 6 6.7434 -1.5912 4.2743 17 6 8.1617 -1.4956 4.7745 18 8 9.0874 -1.6457 4.0053 19 7 8.4016 -1.2424 6.0764 20 6 9.6919 -1.1549 6.5313 21 1 10.5161 -1.2885 5.8465 22 6 9.9392 -0.8944 7.8736 23 7 8.9361 -0.7314 8.7069 24 14 11.6972 -0.7745 8.4934 25 1 12.4000 0.3218 7.7798 26 1 11.6899 -0.4909 9.9510 27 1 12.3994 -2.0587 8.2419 28 6 2.2089 -1.1954 -0.0061 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6676 2.1277 -0.0004 33 1 5.3047 0.1285 -0.0005 34 1 4.9284 -1.8180 -2.0315 35 1 4.2655 -3.4803 -1.9026 36 1 6.9600 -3.1103 -2.0641 37 1 6.2993 -4.3367 -0.9315 38 1 7.5758 -2.9415 0.5643 39 1 7.1550 -1.4514 -0.3346 40 1 7.5930 -1.9636 2.3644 41 1 6.2291 -0.6480 4.4586 42 1 6.2264 -2.3952 4.7981 43 1 7.6612 -1.1220 6.6915 44 1 9.1088 -0.5491 9.6439 45 1 1.6888 -2.1420 -0.0106 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875578130.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:39 Heat of formation + Delta-G solvation = -29.088030 kcal Electronic energy + Delta-G solvation = -28119.818064 eV Core-core repulsion = 24137.133119 eV Total energy + Delta-G solvation = -3982.684945 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.95112 -39.73844 -38.41959 -37.43392 -34.45313 -33.73658 -33.70281 -32.68750 -31.70695 -31.31235 -28.45641 -27.48072 -27.37595 -24.68959 -23.84475 -23.15034 -22.09116 -21.12139 -19.64592 -19.40665 -18.32649 -17.83226 -17.28313 -16.87924 -15.97886 -15.84407 -15.46861 -15.10481 -14.82481 -14.55993 -14.37004 -14.13019 -14.00495 -13.70620 -13.48725 -13.30324 -13.20082 -13.11521 -12.94603 -12.73235 -12.51575 -12.29773 -12.14212 -11.85565 -11.61840 -11.57254 -11.36682 -11.13962 -11.09480 -10.49984 -10.30496 -10.03508 -9.67719 -9.61459 -9.54226 -8.98125 -8.86505 -8.61477 -8.46895 -8.08774 -6.50043 -3.92112 1.00206 1.20304 2.61809 3.14543 3.22265 3.26097 3.35761 3.67583 3.76278 4.02794 4.15072 4.23596 4.33627 4.42742 4.55101 4.64969 4.73293 4.87030 4.87898 4.90967 5.01357 5.08326 5.18525 5.19661 5.31684 5.38911 5.44201 5.51872 5.57694 5.59190 5.67945 5.80088 5.84842 5.91454 6.01805 6.06428 6.09270 6.11859 6.23343 6.62666 6.76217 7.13473 7.46993 7.92672 7.93377 8.16709 8.46484 8.78562 9.05699 9.40752 9.88630 10.66839 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016834 B = 0.002516 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.864015 B =11126.286067 C =12144.477714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.139 4.139 3 C 0.092 3.908 4 N -0.480 5.480 5 C 0.113 3.887 6 C -0.128 4.128 7 C 0.202 3.798 8 H 0.084 0.916 9 C -0.123 4.123 10 C -0.129 4.129 11 C 0.094 3.906 12 N -0.635 5.635 13 C 0.723 3.277 14 O -0.587 6.587 15 N -0.721 5.721 16 C 0.129 3.871 17 C 0.429 3.571 18 O -0.598 6.598 19 N -0.549 5.549 20 C -0.305 4.305 21 H 0.105 0.895 22 C 0.026 3.974 23 N -0.895 5.895 24 Si 0.934 3.066 25 H -0.272 1.272 26 H -0.283 1.283 27 H -0.273 1.273 28 C -0.064 4.064 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.152 0.848 33 H 0.147 0.853 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.406 0.594 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.396 0.604 44 H 0.275 0.725 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.783 -3.180 -20.922 25.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.141 4.141 3 C -0.065 4.065 4 N -0.188 5.188 5 C -0.044 4.044 6 C -0.131 4.131 7 C 0.097 3.903 8 H 0.102 0.898 9 C -0.161 4.161 10 C -0.167 4.167 11 C -0.029 4.029 12 N -0.374 5.374 13 C 0.424 3.576 14 O -0.465 6.465 15 N -0.379 5.379 16 C 0.000 4.000 17 C 0.215 3.785 18 O -0.485 6.485 19 N -0.183 5.183 20 C -0.435 4.435 21 H 0.123 0.877 22 C -0.177 4.177 23 N -0.535 5.535 24 Si 0.761 3.239 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.198 1.198 28 C -0.091 4.091 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.169 0.831 33 H 0.164 0.836 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.245 0.755 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.230 0.770 44 H 0.085 0.915 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.461 -2.313 -20.613 24.727 hybrid contribution 0.390 -0.654 0.750 1.069 sum -13.071 -2.968 -19.863 23.962 Atomic orbital electron populations 1.20696 0.90280 1.03203 1.02318 1.20871 0.97462 0.94125 1.01654 1.22639 0.90032 0.97376 0.96433 1.67681 1.08326 1.31175 1.11584 1.22420 1.00032 0.87079 0.94901 1.21052 0.94507 0.96721 1.00799 1.20145 0.86020 0.93833 0.90295 0.89756 1.22724 0.96941 1.02071 0.94357 1.22768 0.95982 1.00047 0.97952 1.22367 0.88383 1.00066 0.92069 1.47582 1.07031 1.76712 1.06042 1.15343 0.84394 0.78100 0.79733 1.90923 1.30300 1.58546 1.66720 1.44788 1.07602 1.76096 1.09416 1.20788 0.96782 1.02243 0.80154 1.19734 0.89493 0.85459 0.83817 1.90483 1.45131 1.57341 1.55540 1.41778 1.09256 1.60515 1.06791 1.19673 0.84115 1.46298 0.93367 0.87737 1.25330 0.99867 0.96760 0.95771 1.69611 1.31351 1.47566 1.04968 0.85869 0.81540 0.79075 0.77455 1.19773 1.20859 1.19783 1.21241 0.93095 0.98200 0.96515 0.91071 0.91332 0.91203 0.83117 0.83553 0.90211 0.89568 0.89501 0.90230 0.90112 0.91224 0.75547 0.90078 0.90052 0.77016 0.91536 0.85054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 10.04 36.00 0.36 -0.39 16 2 C -0.14 -1.45 5.90 -104.48 -0.62 -2.06 16 3 C 0.09 1.09 10.86 -17.54 -0.19 0.90 16 4 N -0.48 -6.88 10.36 -13.25 -0.14 -7.01 16 5 C 0.11 1.54 10.33 -17.55 -0.18 1.36 16 6 C -0.13 -1.54 4.10 -104.48 -0.43 -1.97 16 7 C 0.20 2.14 3.07 -68.10 -0.21 1.93 16 8 H 0.08 0.91 8.05 -51.93 -0.42 0.49 16 9 C -0.12 -0.85 6.47 -24.90 -0.16 -1.01 16 10 C -0.13 -0.85 7.09 -24.58 -0.17 -1.03 16 11 C 0.09 0.90 6.57 -2.53 -0.02 0.88 16 12 N -0.63 -8.06 2.32 -170.00 -0.39 -8.46 16 13 C 0.72 12.29 8.11 -86.92 -0.70 11.58 16 14 O -0.59 -11.90 16.18 5.29 0.09 -11.81 16 15 N -0.72 -12.69 5.49 -66.41 -0.36 -13.06 16 16 C 0.13 2.49 6.15 -5.19 -0.03 2.46 16 17 C 0.43 10.03 7.85 -10.99 -0.09 9.94 16 18 O -0.60 -15.41 15.24 5.55 0.08 -15.33 16 19 N -0.55 -13.82 5.29 -10.97 -0.06 -13.87 16 20 C -0.31 -8.36 9.68 -14.93 -0.14 -8.51 16 21 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 22 C 0.03 0.68 5.50 -17.46 -0.10 0.58 16 23 N -0.89 -24.15 13.05 55.50 0.72 -23.42 16 24 Si 0.93 20.69 29.55 -169.99 -5.02 15.67 16 25 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 26 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 27 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 28 C -0.06 -0.69 9.52 -39.28 -0.37 -1.07 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 31 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 32 H 0.15 1.38 8.06 -52.49 -0.42 0.95 16 33 H 0.15 1.97 7.67 -52.49 -0.40 1.57 16 34 H 0.08 0.55 7.83 -51.93 -0.41 0.14 16 35 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.80 7.30 -51.93 -0.38 0.42 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.41 6.95 5.92 -40.82 -0.24 6.71 16 41 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 42 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 43 H 0.40 9.63 7.90 -40.82 -0.32 9.31 16 44 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 45 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 LS Contribution 379.47 15.07 5.72 5.72 Total: -1.00 -34.03 379.47 -8.74 -42.77 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: -6.33 Total: 15.20 kcal Atomic # 6 Polarization: 16.65 SS G_CDS: -3.05 Total: 13.60 kcal Atomic # 7 Polarization: -65.60 SS G_CDS: -0.23 Total: -65.83 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: 0.17 Total: -27.14 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.03 -8.74 -42.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875578130.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.686 kcal (2) G-P(sol) polarization free energy of solvation -34.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds