Wall clock time and date at job start Tue Mar 31 2020 17:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38236 * 120.42001 * 2 1 4 4 N 1.31857 * 120.75897 * 180.02562 * 3 2 1 5 5 C 1.31888 * 121.73079 * 359.97438 * 4 3 2 6 6 C 1.38178 * 120.76101 * 0.02748 * 5 4 3 7 7 C 1.50708 * 120.41406 * 179.97438 * 6 5 4 8 8 H 1.08993 * 109.86945 * 158.98095 * 7 6 5 9 9 C 1.54322 * 109.87867 * 279.99940 * 7 6 5 10 10 C 1.55153 * 102.94269 * 141.61359 * 9 7 6 11 11 C 1.54917 * 101.57995 * 324.49512 * 10 9 7 12 12 N 1.47020 * 109.88229 * 37.80576 * 7 6 5 13 13 C 1.34777 * 125.65143 * 61.67650 * 12 7 6 14 14 O 1.21588 * 119.99742 * 359.97438 * 13 12 7 15 15 N 1.34775 * 120.00019 * 179.97438 * 13 12 7 16 16 C 1.46503 * 119.99834 * 180.02562 * 15 13 12 17 17 C 1.50695 * 109.47206 * 180.02562 * 16 15 13 18 18 O 1.21293 * 119.99738 * 0.02562 * 17 16 15 19 19 N 1.34777 * 120.00352 * 179.97438 * 17 16 15 20 20 C 1.37093 * 120.00112 * 180.02562 * 19 17 16 21 21 H 1.07990 * 120.00531 * 0.02562 * 20 19 17 22 22 C 1.38958 * 119.99922 * 180.02562 * 20 19 17 23 23 N 1.31415 * 119.99878 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00122 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47525 * 59.99735 * 24 22 20 26 26 H 1.48499 * 109.46982 * 179.97438 * 24 22 20 27 27 H 1.48508 * 109.47039 * 299.99832 * 24 22 20 28 28 C 1.38627 * 120.41952 * 180.29458 * 2 1 3 29 29 H 1.09003 * 109.47222 * 89.99826 * 1 2 3 30 30 H 1.08993 * 109.47314 * 210.00540 * 1 2 3 31 31 H 1.08998 * 109.47003 * 330.00069 * 1 2 3 32 32 H 1.07991 * 119.61912 * 359.97438 * 3 2 1 33 33 H 1.07993 * 119.61477 * 180.02562 * 5 4 3 34 34 H 1.08997 * 110.72456 * 23.24598 * 9 7 6 35 35 H 1.09004 * 110.71864 * 259.97148 * 9 7 6 36 36 H 1.09005 * 111.00422 * 206.42378 * 10 9 7 37 37 H 1.08998 * 111.04242 * 82.58375 * 10 9 7 38 38 H 1.08998 * 110.36726 * 155.84993 * 11 10 9 39 39 H 1.09005 * 110.36534 * 278.17514 * 11 10 9 40 40 H 0.97000 * 120.00401 * 0.02562 * 15 13 12 41 41 H 1.09003 * 109.46966 * 300.00813 * 16 15 13 42 42 H 1.09001 * 109.46785 * 59.99963 * 16 15 13 43 43 H 0.97006 * 119.99818 * 0.02562 * 19 17 16 44 44 H 0.96998 * 119.99819 * 180.02562 * 23 22 20 45 45 H 1.08003 * 120.79210 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1921 0.0000 4 7 3.5255 1.1999 -0.0005 5 6 4.2257 0.0822 -0.0005 6 6 3.5948 -1.1471 -0.0006 7 6 4.4027 -2.4193 -0.0012 8 1 3.7937 -3.2451 0.3665 9 6 4.8962 -2.7269 -1.4307 10 6 6.3266 -3.2790 -1.1932 11 6 6.7953 -2.4215 0.0088 12 7 5.5932 -2.2560 0.8459 13 6 5.5866 -1.9984 2.1688 14 8 4.5307 -1.8814 2.7601 15 7 6.7505 -1.8706 2.8362 16 6 6.7434 -1.5912 4.2743 17 6 8.1617 -1.4956 4.7745 18 8 9.0874 -1.6457 4.0053 19 7 8.4016 -1.2424 6.0764 20 6 9.6919 -1.1549 6.5313 21 1 10.5161 -1.2885 5.8465 22 6 9.9392 -0.8944 7.8736 23 7 8.9361 -0.7314 8.7069 24 14 11.6972 -0.7745 8.4934 25 1 12.4000 0.3218 7.7798 26 1 11.6899 -0.4909 9.9510 27 1 12.3994 -2.0587 8.2419 28 6 2.2089 -1.1954 -0.0061 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6676 2.1277 -0.0004 33 1 5.3047 0.1285 -0.0005 34 1 4.9284 -1.8180 -2.0315 35 1 4.2655 -3.4803 -1.9026 36 1 6.9600 -3.1103 -2.0641 37 1 6.2993 -4.3367 -0.9315 38 1 7.5758 -2.9415 0.5643 39 1 7.1550 -1.4514 -0.3346 40 1 7.5930 -1.9636 2.3644 41 1 6.2291 -0.6480 4.4586 42 1 6.2264 -2.3952 4.7981 43 1 7.6612 -1.1220 6.6915 44 1 9.1088 -0.5491 9.6439 45 1 1.6888 -2.1420 -0.0106 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875578130.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:38 Heat of formation + Delta-G solvation = -52.260184 kcal Electronic energy + Delta-G solvation = -28120.822884 eV Core-core repulsion = 24137.133119 eV Total energy + Delta-G solvation = -3983.689765 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.93863 -40.91043 -40.11195 -38.59743 -36.26986 -35.37904 -34.51111 -33.63777 -33.37614 -32.57347 -29.39391 -28.89091 -28.16156 -26.48397 -24.87204 -24.06311 -22.89622 -22.01314 -21.35117 -20.70100 -20.08206 -19.25654 -18.17962 -17.83276 -17.43240 -17.02053 -16.95896 -16.55954 -16.39118 -15.97765 -15.50979 -15.37207 -15.27706 -15.04368 -14.35173 -14.26871 -14.14982 -14.00141 -13.94201 -13.67548 -13.61679 -13.55062 -13.36372 -13.17173 -12.94971 -12.90193 -12.48437 -12.22533 -12.14663 -12.10932 -11.71146 -11.57665 -11.39610 -10.58657 -10.56160 -10.46641 -10.32324 -10.11587 -9.81628 -9.52955 -8.52165 -6.02767 0.11910 0.32707 1.37054 1.40027 1.45627 1.54391 1.87029 2.05668 2.26930 2.74985 2.90382 3.14725 3.15440 3.42139 3.59764 3.66234 3.74572 3.91142 4.05037 4.06690 4.12908 4.18006 4.29810 4.35527 4.37137 4.39953 4.52812 4.64974 4.78422 4.83626 4.86607 4.90655 4.95916 5.09191 5.17014 5.19534 5.27135 5.30628 5.32509 5.35108 5.37026 5.78617 5.90086 5.96181 6.45751 6.87655 7.01000 7.01369 7.38959 7.47786 7.91539 8.64655 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016834 B = 0.002516 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.864015 B =11126.286067 C =12144.477714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.135 4.135 3 C 0.074 3.926 4 N -0.513 5.513 5 C 0.088 3.912 6 C -0.132 4.132 7 C 0.195 3.805 8 H 0.085 0.915 9 C -0.111 4.111 10 C -0.117 4.117 11 C 0.084 3.916 12 N -0.629 5.629 13 C 0.720 3.280 14 O -0.624 6.624 15 N -0.723 5.723 16 C 0.143 3.857 17 C 0.434 3.566 18 O -0.622 6.622 19 N -0.558 5.558 20 C -0.338 4.338 21 H 0.088 0.912 22 C -0.011 4.011 23 N -0.917 5.917 24 Si 0.998 3.002 25 H -0.270 1.270 26 H -0.272 1.272 27 H -0.268 1.268 28 C -0.074 4.074 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.171 0.829 33 H 0.136 0.864 34 H 0.081 0.919 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.409 0.591 41 H 0.084 0.916 42 H 0.091 0.909 43 H 0.398 0.602 44 H 0.280 0.720 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.567 -4.072 -22.267 26.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.137 4.137 3 C -0.083 4.083 4 N -0.221 5.221 5 C -0.069 4.069 6 C -0.135 4.135 7 C 0.091 3.909 8 H 0.103 0.897 9 C -0.149 4.149 10 C -0.155 4.155 11 C -0.038 4.038 12 N -0.366 5.366 13 C 0.422 3.578 14 O -0.505 6.505 15 N -0.381 5.381 16 C 0.014 3.986 17 C 0.221 3.779 18 O -0.510 6.510 19 N -0.194 5.194 20 C -0.467 4.467 21 H 0.105 0.895 22 C -0.212 4.212 23 N -0.557 5.557 24 Si 0.821 3.179 25 H -0.195 1.195 26 H -0.196 1.196 27 H -0.193 1.193 28 C -0.101 4.101 29 H 0.109 0.891 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.188 0.812 33 H 0.154 0.846 34 H 0.099 0.901 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.247 0.753 41 H 0.102 0.898 42 H 0.109 0.891 43 H 0.232 0.768 44 H 0.090 0.910 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -14.251 -3.219 -22.011 26.418 hybrid contribution 0.554 -0.362 1.101 1.285 sum -13.697 -3.581 -20.910 25.251 Atomic orbital electron populations 1.20769 0.87638 1.03999 1.03781 1.21266 0.99334 0.93406 0.99649 1.23077 0.89496 0.99039 0.96685 1.67607 1.09800 1.31932 1.12718 1.22364 0.99788 0.87872 0.96852 1.21210 0.95372 0.96553 1.00346 1.20460 0.85296 0.93146 0.92002 0.89747 1.22726 0.97347 1.02939 0.91838 1.22770 0.95893 0.99636 0.97161 1.22641 0.87263 1.01101 0.92807 1.47630 1.09207 1.74951 1.04860 1.15454 0.83404 0.77942 0.81027 1.90883 1.31261 1.60262 1.68077 1.44714 1.08125 1.76591 1.08688 1.20552 0.93770 1.02821 0.81417 1.20322 0.90831 0.83649 0.83065 1.90458 1.46572 1.57965 1.56050 1.41829 1.08808 1.61237 1.07485 1.19714 0.84620 1.48404 0.93956 0.89456 1.26168 1.03955 0.95689 0.95384 1.69683 1.33124 1.47496 1.05371 0.84908 0.76588 0.79100 0.77272 1.19481 1.19609 1.19318 1.21622 0.92811 0.99523 0.96113 0.89114 0.90576 0.90372 0.81157 0.84611 0.90056 0.86902 0.87053 0.89534 0.90634 0.90784 0.75302 0.89750 0.89079 0.76765 0.91029 0.82683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.21 10.04 71.24 0.71 -0.49 16 2 C -0.13 -2.61 5.90 -19.77 -0.12 -2.73 16 3 C 0.07 1.72 10.86 84.69 0.92 2.64 16 4 N -0.51 -15.02 10.36 -195.85 -2.03 -17.05 16 5 C 0.09 2.46 10.33 84.67 0.87 3.33 16 6 C -0.13 -3.11 4.10 -19.77 -0.08 -3.19 16 7 C 0.20 3.91 3.07 44.60 0.14 4.04 16 8 H 0.08 1.70 8.05 -2.39 -0.02 1.68 16 9 C -0.11 -1.25 6.47 31.78 0.21 -1.05 16 10 C -0.12 -1.23 7.09 31.99 0.23 -1.00 16 11 C 0.08 1.52 6.57 86.86 0.57 2.09 16 12 N -0.63 -15.77 2.32 -810.03 -1.88 -17.65 16 13 C 0.72 24.75 8.11 179.05 1.45 26.20 16 14 O -0.62 -25.62 16.18 -3.99 -0.06 -25.69 16 15 N -0.72 -25.84 5.49 -482.29 -2.65 -28.49 16 16 C 0.14 5.62 6.15 85.63 0.53 6.15 16 17 C 0.43 20.72 7.85 87.66 0.69 21.40 16 18 O -0.62 -32.73 15.24 -3.07 -0.05 -32.77 16 19 N -0.56 -28.76 5.29 -306.99 -1.62 -30.38 16 20 C -0.34 -18.86 9.68 84.04 0.81 -18.05 16 21 H 0.09 5.09 7.16 -2.92 -0.02 5.07 16 22 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 23 N -0.92 -49.48 13.05 21.67 0.28 -49.20 16 24 Si 1.00 42.14 29.55 68.60 2.03 44.17 16 25 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 26 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 27 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 28 C -0.07 -1.51 9.52 22.47 0.21 -1.30 16 29 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.08 0.79 8.10 -2.39 -0.02 0.77 16 31 H 0.08 0.79 8.09 -2.39 -0.02 0.77 16 32 H 0.17 3.00 8.06 -2.92 -0.02 2.98 16 33 H 0.14 3.86 7.67 -2.91 -0.02 3.84 16 34 H 0.08 0.94 7.83 -2.39 -0.02 0.92 16 35 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.11 0.71 8.14 -2.38 -0.02 0.69 16 37 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.08 1.46 7.30 -2.39 -0.02 1.44 16 39 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 40 H 0.41 14.23 5.92 -92.71 -0.55 13.68 16 41 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 42 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 43 H 0.40 19.84 7.90 -92.70 -0.73 19.10 16 44 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 45 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -74.77 379.47 1.39 -73.38 By element: Atomic # 1 Polarization: 46.01 SS G_CDS: -0.25 Total: 45.76 kcal Atomic # 6 Polarization: 30.31 SS G_CDS: 7.61 Total: 37.92 kcal Atomic # 7 Polarization: -134.88 SS G_CDS: -7.89 Total: -142.77 kcal Atomic # 8 Polarization: -58.35 SS G_CDS: -0.11 Total: -58.46 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -74.77 1.39 -73.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875578130.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.122 kcal (2) G-P(sol) polarization free energy of solvation -74.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds