Wall clock time and date at job start Tue Mar 31 2020 17:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38403 * 120.44751 * 2 1 4 4 C 1.38791 * 118.49365 * 180.29037 * 3 2 1 5 5 C 1.38119 * 119.30950 * 359.72630 * 4 3 2 6 6 N 1.31905 * 120.84709 * 0.02562 * 5 4 3 7 7 C 1.32376 * 121.63441 * 0.02562 * 6 5 4 8 8 N 1.39413 * 119.69364 * 180.02562 * 7 6 5 9 9 C 1.34773 * 119.99810 * 359.97438 * 8 7 6 10 10 O 1.21275 * 120.00430 * 359.97438 * 9 8 7 11 11 C 1.50703 * 119.99983 * 180.02562 * 9 8 7 12 12 N 1.46897 * 109.47390 * 179.97438 * 11 9 8 13 13 C 1.46905 * 110.99826 * 169.99874 * 12 11 9 14 14 C 1.53243 * 109.33672 * 187.25448 * 13 12 11 15 15 N 1.47076 * 108.52280 * 306.17389 * 14 13 12 16 16 C 1.34777 * 120.88062 * 231.18540 * 15 14 13 17 17 O 1.21687 * 120.00006 * 5.22924 * 16 15 14 18 18 C 1.46376 * 120.00313 * 185.22734 * 16 15 14 19 19 H 1.07997 * 119.99552 * 354.99977 * 18 16 15 20 20 C 1.40044 * 120.00321 * 175.00114 * 18 16 15 21 21 N 1.30673 * 119.99689 * 359.97438 * 20 18 16 22 22 Si 1.86795 * 120.00192 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47234 * 269.99511 * 22 20 18 24 24 H 1.48504 * 109.46981 * 29.99629 * 22 20 18 25 25 H 1.48500 * 109.47228 * 149.99275 * 22 20 18 26 26 C 1.47077 * 118.23996 * 51.45605 * 15 14 13 27 27 C 1.46898 * 111.00153 * 294.30172 * 12 11 9 28 28 H 1.09008 * 109.46517 * 270.24684 * 1 2 3 29 29 H 1.08991 * 109.47578 * 30.24174 * 1 2 3 30 30 H 1.08997 * 109.47367 * 150.25466 * 1 2 3 31 31 H 1.08002 * 120.75528 * 0.02562 * 3 2 1 32 32 H 1.07998 * 120.34623 * 179.70928 * 4 3 2 33 33 H 1.07995 * 119.57783 * 180.02562 * 5 4 3 34 34 H 0.96999 * 119.99831 * 179.97438 * 8 7 6 35 35 H 1.09003 * 109.46865 * 59.99576 * 11 9 8 36 36 H 1.09003 * 109.47067 * 300.00152 * 11 9 8 37 37 H 1.08994 * 109.49159 * 67.30254 * 13 12 11 38 38 H 1.08999 * 109.51460 * 307.22708 * 13 12 11 39 39 H 1.08999 * 109.62657 * 186.46027 * 14 13 12 40 40 H 1.09008 * 109.62520 * 65.87988 * 14 13 12 41 41 H 0.97000 * 120.00181 * 180.02562 * 21 20 18 42 42 H 1.09007 * 109.62715 * 68.25082 * 26 15 14 43 43 H 1.09000 * 109.63081 * 188.83321 * 26 15 14 44 44 H 1.09001 * 109.49368 * 292.70476 * 27 12 11 45 45 H 1.09004 * 109.49188 * 52.78672 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2084 1.1932 0.0000 4 6 3.5955 1.1459 -0.0062 5 6 4.2302 -0.0809 -0.0064 6 7 3.5351 -1.2020 -0.0012 7 6 2.2114 -1.1982 0.0037 8 7 1.5174 -2.4073 0.0096 9 6 2.1942 -3.5728 0.0096 10 8 3.4070 -3.5698 0.0041 11 6 1.4440 -4.8798 0.0154 12 7 2.4014 -5.9939 0.0137 13 6 1.7211 -7.2730 0.2572 14 6 2.7672 -8.3797 0.4280 15 7 3.6602 -8.3628 -0.7406 16 6 3.9105 -9.4897 -1.4362 17 8 3.3226 -10.5187 -1.1597 18 6 4.8894 -9.4760 -2.5243 19 1 5.3516 -8.5467 -2.8231 20 6 5.2268 -10.6677 -3.1780 21 7 4.6679 -11.7921 -2.8161 22 14 6.4766 -10.6502 -4.5661 23 1 5.7784 -10.4302 -5.8581 24 1 7.4536 -9.5552 -4.3387 25 1 7.1914 -11.9512 -4.6050 26 6 4.2776 -7.0848 -1.1262 27 6 3.1674 -6.0279 -1.2393 28 1 -0.3633 0.0044 1.0278 29 1 -0.3634 0.8877 -0.5175 30 1 -0.3634 -0.8922 -0.5098 31 1 1.6881 2.1396 0.0004 32 1 4.1725 2.0587 -0.0111 33 1 5.3093 -0.1227 -0.0107 34 1 0.5474 -2.4097 0.0136 35 1 0.8141 -4.9410 -0.8721 36 1 0.8208 -4.9371 0.9079 37 1 1.0767 -7.5092 -0.5895 38 1 1.1192 -7.1985 1.1629 39 1 2.2693 -9.3470 0.4944 40 1 3.3462 -8.1996 1.3338 41 1 4.9018 -12.6176 -3.2685 42 1 4.9989 -6.7828 -0.3668 43 1 4.7787 -7.1957 -2.0878 44 1 2.5027 -6.2815 -2.0652 45 1 3.6147 -5.0502 -1.4188 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878673160.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:50 Heat of formation + Delta-G solvation = 3.475853 kcal Electronic energy + Delta-G solvation = -28148.138879 eV Core-core repulsion = 24166.866010 eV Total energy + Delta-G solvation = -3981.272869 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.12424 -39.54649 -38.31470 -36.34704 -35.21623 -33.78637 -33.34125 -32.43753 -31.14324 -30.54415 -28.66888 -27.50107 -26.36884 -24.84521 -23.46913 -22.99973 -22.32577 -20.81972 -20.46816 -18.79342 -18.45753 -17.27749 -16.60198 -15.97325 -15.91654 -15.73893 -15.63450 -14.86153 -14.81186 -14.47229 -14.37474 -14.24133 -14.18315 -13.82971 -13.57775 -13.31233 -13.15724 -13.09285 -12.88249 -12.48357 -12.06674 -11.99036 -11.62826 -11.40095 -11.15658 -11.02976 -10.88249 -10.87973 -10.66391 -10.49464 -10.18866 -10.11658 -9.89695 -9.86765 -9.15331 -8.82343 -8.43422 -8.16641 -7.54141 -7.12276 -6.16238 -4.60408 0.81758 1.05780 2.55515 2.60232 3.16613 3.23573 3.27396 3.65408 3.95059 4.12684 4.19476 4.38959 4.46928 4.59406 4.66835 4.67917 4.72081 4.89509 5.07395 5.08597 5.11271 5.14644 5.31435 5.42887 5.55268 5.56922 5.71889 5.73957 5.81565 5.86520 5.88465 5.96529 6.04100 6.21145 6.34838 6.50681 6.55442 6.61051 6.81776 6.87477 7.18623 7.28336 7.49720 7.67786 7.84368 8.17427 8.19042 8.42072 9.06095 9.49366 10.61347 10.80114 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019689 B = 0.002433 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.760246 B =11503.507313 C =12466.715939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.181 4.181 3 C -0.051 4.051 4 C -0.207 4.207 5 C 0.129 3.871 6 N -0.472 5.472 7 C 0.367 3.633 8 N -0.667 5.667 9 C 0.500 3.500 10 O -0.441 6.441 11 C 0.038 3.962 12 N -0.519 5.519 13 C 0.047 3.953 14 C 0.126 3.874 15 N -0.645 5.645 16 C 0.560 3.440 17 O -0.581 6.581 18 C -0.544 4.544 19 H 0.073 0.927 20 C 0.088 3.912 21 N -0.769 5.769 22 Si 0.906 3.094 23 H -0.272 1.272 24 H -0.264 1.264 25 H -0.279 1.279 26 C 0.133 3.867 27 C 0.037 3.963 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.135 0.865 32 H 0.134 0.866 33 H 0.158 0.842 34 H 0.414 0.586 35 H 0.062 0.938 36 H 0.103 0.897 37 H 0.036 0.964 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.050 0.950 41 H 0.268 0.732 42 H 0.053 0.947 43 H 0.093 0.907 44 H 0.030 0.970 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.572 26.752 5.359 28.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.186 4.186 3 C -0.077 4.077 4 C -0.228 4.228 5 C -0.029 4.029 6 N -0.186 5.186 7 C 0.135 3.865 8 N -0.316 5.316 9 C 0.285 3.715 10 O -0.307 6.307 11 C -0.093 4.093 12 N -0.244 5.244 13 C -0.082 4.082 14 C 0.002 3.998 15 N -0.384 5.384 16 C 0.366 3.634 17 O -0.463 6.463 18 C -0.580 4.580 19 H 0.091 0.909 20 C -0.132 4.132 21 N -0.398 5.398 22 Si 0.731 3.269 23 H -0.198 1.198 24 H -0.188 1.188 25 H -0.205 1.205 26 C 0.008 3.992 27 C -0.091 4.091 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.153 0.847 32 H 0.152 0.848 33 H 0.176 0.824 34 H 0.251 0.749 35 H 0.080 0.920 36 H 0.121 0.879 37 H 0.054 0.946 38 H 0.093 0.907 39 H 0.106 0.894 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.111 0.889 44 H 0.048 0.952 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.237 25.048 5.855 27.010 hybrid contribution -0.939 0.946 -1.305 1.866 sum -9.177 25.994 4.550 27.939 Atomic orbital electron populations 1.20661 0.90232 1.03026 1.02592 1.20279 0.97195 0.92435 1.08705 1.21242 0.94044 0.97289 0.95147 1.22048 0.95162 0.99660 1.05939 1.22719 1.00345 0.86771 0.93101 1.67728 1.05394 1.30935 1.14528 1.18340 0.88921 0.85029 0.94203 1.43851 1.10474 1.03860 1.73424 1.20988 0.89012 0.84581 0.76964 1.90812 1.12992 1.85897 1.40961 1.21939 0.94687 0.89668 1.03033 1.61675 1.24166 1.01886 1.36714 1.22566 0.96470 0.89000 1.00148 1.21187 0.91511 0.97404 0.89739 1.48261 1.50016 1.09103 1.31017 1.18242 0.82614 0.80579 0.81955 1.90578 1.53736 1.31273 1.70763 1.20988 1.24768 0.94662 1.17602 0.90933 1.25728 0.95606 0.95005 0.96861 1.70020 1.35415 0.98745 1.35609 0.86397 0.80888 0.78314 0.81346 1.19786 1.18786 1.20461 1.21529 0.93531 0.82819 1.01331 1.22828 0.96497 1.01342 0.88419 0.90841 0.90826 0.91799 0.84728 0.84835 0.82437 0.74875 0.91997 0.87865 0.94567 0.90743 0.89443 0.93166 0.92154 0.92893 0.88871 0.95152 0.89180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.50 9.59 36.01 0.35 -0.15 16 2 C -0.18 -1.46 5.91 -104.28 -0.62 -2.08 16 3 C -0.05 -0.36 9.85 -39.32 -0.39 -0.75 16 4 C -0.21 -1.59 10.11 -39.42 -0.40 -1.99 16 5 C 0.13 1.34 11.18 -17.56 -0.20 1.14 16 6 N -0.47 -6.44 7.87 -12.37 -0.10 -6.54 16 7 C 0.37 4.13 7.41 -154.69 -1.15 2.99 16 8 N -0.67 -6.59 5.30 -11.43 -0.06 -6.65 16 9 C 0.50 6.52 7.46 -10.99 -0.08 6.44 16 10 O -0.44 -7.70 12.58 5.56 0.07 -7.63 16 11 C 0.04 0.44 5.45 -4.98 -0.03 0.42 16 12 N -0.52 -8.22 4.37 -235.46 -1.03 -9.25 16 13 C 0.05 0.75 5.62 -3.70 -0.02 0.73 16 14 C 0.13 2.58 6.61 -3.60 -0.02 2.55 16 15 N -0.65 -15.47 3.00 -173.84 -0.52 -15.99 16 16 C 0.56 16.39 7.63 -12.99 -0.10 16.29 16 17 O -0.58 -19.09 14.49 5.20 0.08 -19.01 16 18 C -0.54 -15.63 8.86 -35.63 -0.32 -15.94 16 19 H 0.07 1.92 5.74 -52.49 -0.30 1.62 16 20 C 0.09 2.48 5.50 -17.37 -0.10 2.39 16 21 N -0.77 -23.37 11.84 55.55 0.66 -22.71 16 22 Si 0.91 20.50 29.56 -169.99 -5.02 15.48 16 23 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 24 H -0.26 -5.79 7.11 56.52 0.40 -5.39 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 26 C 0.13 2.75 6.50 -3.36 -0.02 2.73 16 27 C 0.04 0.66 5.27 -3.46 -0.02 0.64 16 28 H 0.07 0.28 8.14 -51.92 -0.42 -0.14 16 29 H 0.07 0.26 8.10 -51.93 -0.42 -0.16 16 30 H 0.06 0.24 6.57 -51.93 -0.34 -0.10 16 31 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 32 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 33 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.41 2.44 6.68 -40.82 -0.27 2.17 16 35 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 36 H 0.10 0.90 7.97 -51.93 -0.41 0.49 16 37 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.96 7.99 -51.93 -0.41 0.55 16 39 H 0.09 1.94 7.04 -51.93 -0.37 1.57 16 40 H 0.05 0.99 8.14 -51.92 -0.42 0.57 16 41 H 0.27 7.38 8.29 -40.82 -0.34 7.04 16 42 H 0.05 1.10 8.14 -51.92 -0.42 0.67 16 43 H 0.09 1.99 5.46 -51.93 -0.28 1.71 16 44 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.09 1.59 5.76 -51.93 -0.30 1.30 16 LS Contribution 365.87 15.07 5.51 5.51 Total: -1.00 -39.54 365.87 -9.57 -49.11 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -6.05 Total: 2.28 kcal Atomic # 6 Polarization: 18.50 SS G_CDS: -3.10 Total: 15.40 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: -1.05 Total: -61.13 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: 0.15 Total: -26.64 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -39.54 -9.57 -49.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878673160.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.584 kcal (2) G-P(sol) polarization free energy of solvation -39.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds