Wall clock time and date at job start Tue Mar 31 2020 17:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38403 * 120.44751 * 2 1 4 4 C 1.38791 * 118.49365 * 180.29037 * 3 2 1 5 5 C 1.38119 * 119.30950 * 359.72630 * 4 3 2 6 6 N 1.31905 * 120.84709 * 0.02562 * 5 4 3 7 7 C 1.32376 * 121.63441 * 0.02562 * 6 5 4 8 8 N 1.39413 * 119.69364 * 180.02562 * 7 6 5 9 9 C 1.34773 * 119.99810 * 359.97438 * 8 7 6 10 10 O 1.21275 * 120.00430 * 359.97438 * 9 8 7 11 11 C 1.50703 * 119.99983 * 180.02562 * 9 8 7 12 12 N 1.46897 * 109.47390 * 179.97438 * 11 9 8 13 13 C 1.46905 * 110.99826 * 169.99874 * 12 11 9 14 14 C 1.53243 * 109.33672 * 187.25448 * 13 12 11 15 15 N 1.47076 * 108.52280 * 306.17389 * 14 13 12 16 16 C 1.34777 * 120.88062 * 231.18540 * 15 14 13 17 17 O 1.21687 * 120.00006 * 5.22924 * 16 15 14 18 18 C 1.46376 * 120.00313 * 185.22734 * 16 15 14 19 19 H 1.07997 * 119.99552 * 354.99977 * 18 16 15 20 20 C 1.40044 * 120.00321 * 175.00114 * 18 16 15 21 21 N 1.30673 * 119.99689 * 359.97438 * 20 18 16 22 22 Si 1.86795 * 120.00192 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47234 * 269.99511 * 22 20 18 24 24 H 1.48504 * 109.46981 * 29.99629 * 22 20 18 25 25 H 1.48500 * 109.47228 * 149.99275 * 22 20 18 26 26 C 1.47077 * 118.23996 * 51.45605 * 15 14 13 27 27 C 1.46898 * 111.00153 * 294.30172 * 12 11 9 28 28 H 1.09008 * 109.46517 * 270.24684 * 1 2 3 29 29 H 1.08991 * 109.47578 * 30.24174 * 1 2 3 30 30 H 1.08997 * 109.47367 * 150.25466 * 1 2 3 31 31 H 1.08002 * 120.75528 * 0.02562 * 3 2 1 32 32 H 1.07998 * 120.34623 * 179.70928 * 4 3 2 33 33 H 1.07995 * 119.57783 * 180.02562 * 5 4 3 34 34 H 0.96999 * 119.99831 * 179.97438 * 8 7 6 35 35 H 1.09003 * 109.46865 * 59.99576 * 11 9 8 36 36 H 1.09003 * 109.47067 * 300.00152 * 11 9 8 37 37 H 1.08994 * 109.49159 * 67.30254 * 13 12 11 38 38 H 1.08999 * 109.51460 * 307.22708 * 13 12 11 39 39 H 1.08999 * 109.62657 * 186.46027 * 14 13 12 40 40 H 1.09008 * 109.62520 * 65.87988 * 14 13 12 41 41 H 0.97000 * 120.00181 * 180.02562 * 21 20 18 42 42 H 1.09007 * 109.62715 * 68.25082 * 26 15 14 43 43 H 1.09000 * 109.63081 * 188.83321 * 26 15 14 44 44 H 1.09001 * 109.49368 * 292.70476 * 27 12 11 45 45 H 1.09004 * 109.49188 * 52.78672 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2084 1.1932 0.0000 4 6 3.5955 1.1459 -0.0062 5 6 4.2302 -0.0809 -0.0064 6 7 3.5351 -1.2020 -0.0012 7 6 2.2114 -1.1982 0.0037 8 7 1.5174 -2.4073 0.0096 9 6 2.1942 -3.5728 0.0096 10 8 3.4070 -3.5698 0.0041 11 6 1.4440 -4.8798 0.0154 12 7 2.4014 -5.9939 0.0137 13 6 1.7211 -7.2730 0.2572 14 6 2.7672 -8.3797 0.4280 15 7 3.6602 -8.3628 -0.7406 16 6 3.9105 -9.4897 -1.4362 17 8 3.3226 -10.5187 -1.1597 18 6 4.8894 -9.4760 -2.5243 19 1 5.3516 -8.5467 -2.8231 20 6 5.2268 -10.6677 -3.1780 21 7 4.6679 -11.7921 -2.8161 22 14 6.4766 -10.6502 -4.5661 23 1 5.7784 -10.4302 -5.8581 24 1 7.4536 -9.5552 -4.3387 25 1 7.1914 -11.9512 -4.6050 26 6 4.2776 -7.0848 -1.1262 27 6 3.1674 -6.0279 -1.2393 28 1 -0.3633 0.0044 1.0278 29 1 -0.3634 0.8877 -0.5175 30 1 -0.3634 -0.8922 -0.5098 31 1 1.6881 2.1396 0.0004 32 1 4.1725 2.0587 -0.0111 33 1 5.3093 -0.1227 -0.0107 34 1 0.5474 -2.4097 0.0136 35 1 0.8141 -4.9410 -0.8721 36 1 0.8208 -4.9371 0.9079 37 1 1.0767 -7.5092 -0.5895 38 1 1.1192 -7.1985 1.1629 39 1 2.2693 -9.3470 0.4944 40 1 3.3462 -8.1996 1.3338 41 1 4.9018 -12.6176 -3.2685 42 1 4.9989 -6.7828 -0.3668 43 1 4.7787 -7.1957 -2.0878 44 1 2.5027 -6.2815 -2.0652 45 1 3.6147 -5.0502 -1.4188 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878673160.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:49 Heat of formation + Delta-G solvation = -26.342389 kcal Electronic energy + Delta-G solvation = -28149.431895 eV Core-core repulsion = 24166.866010 eV Total energy + Delta-G solvation = -3982.565885 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.89982 -40.68187 -39.80368 -38.10000 -36.08009 -35.11200 -34.60824 -34.39527 -32.14162 -31.86861 -29.93754 -28.46378 -27.97124 -26.21420 -24.57953 -24.35717 -22.97840 -22.47870 -21.40359 -20.58343 -19.22655 -18.49306 -18.17180 -17.81514 -16.81910 -16.70052 -16.53446 -16.25837 -16.01697 -15.90373 -15.72710 -15.62802 -15.30330 -14.98019 -14.92880 -14.43157 -14.33602 -13.83525 -13.68155 -13.50967 -13.37667 -13.29514 -13.13427 -12.80806 -12.69823 -12.69469 -12.46486 -12.23141 -12.10785 -11.99748 -11.87046 -11.68458 -11.09063 -10.94579 -10.52726 -9.99664 -9.81166 -9.46446 -9.11532 -9.03253 -8.30978 -6.85843 0.14334 0.42961 1.37902 1.39404 1.54738 1.70754 1.77546 2.22564 2.43630 2.70623 2.96589 2.99188 3.40023 3.57268 3.81593 3.88540 3.97381 4.08455 4.10930 4.17073 4.19979 4.26817 4.32971 4.37738 4.46741 4.53175 4.63482 4.66200 4.81206 4.81647 4.84680 4.88087 4.94508 5.13486 5.15836 5.22595 5.30752 5.35995 5.39485 5.70223 5.84662 5.92024 5.96785 6.11319 6.27369 6.40744 6.86066 7.05563 7.38998 7.40279 8.44096 8.65170 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019689 B = 0.002433 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.760246 B =11503.507313 C =12466.715939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.171 4.171 3 C -0.056 4.056 4 C -0.195 4.195 5 C 0.097 3.903 6 N -0.522 5.522 7 C 0.332 3.668 8 N -0.652 5.652 9 C 0.500 3.500 10 O -0.496 6.496 11 C 0.041 3.959 12 N -0.532 5.532 13 C 0.062 3.938 14 C 0.119 3.881 15 N -0.648 5.648 16 C 0.542 3.458 17 O -0.631 6.631 18 C -0.571 4.571 19 H 0.088 0.912 20 C 0.030 3.970 21 N -0.821 5.821 22 Si 0.995 3.005 23 H -0.260 1.260 24 H -0.251 1.251 25 H -0.271 1.271 26 C 0.132 3.868 27 C 0.055 3.945 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.171 0.829 32 H 0.162 0.838 33 H 0.161 0.839 34 H 0.432 0.568 35 H 0.086 0.914 36 H 0.141 0.859 37 H 0.030 0.970 38 H 0.117 0.883 39 H 0.063 0.937 40 H 0.056 0.944 41 H 0.275 0.725 42 H 0.050 0.950 43 H 0.082 0.918 44 H 0.026 0.974 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.024 30.094 4.960 32.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.177 4.177 3 C -0.081 4.081 4 C -0.216 4.216 5 C -0.060 4.060 6 N -0.236 5.236 7 C 0.101 3.899 8 N -0.303 5.303 9 C 0.286 3.714 10 O -0.366 6.366 11 C -0.089 4.089 12 N -0.257 5.257 13 C -0.067 4.067 14 C -0.004 4.004 15 N -0.385 5.385 16 C 0.349 3.651 17 O -0.518 6.518 18 C -0.607 4.607 19 H 0.106 0.894 20 C -0.185 4.185 21 N -0.450 5.450 22 Si 0.814 3.186 23 H -0.185 1.185 24 H -0.174 1.174 25 H -0.195 1.195 26 C 0.008 3.992 27 C -0.074 4.074 28 H 0.105 0.895 29 H 0.109 0.891 30 H 0.091 0.909 31 H 0.188 0.812 32 H 0.180 0.820 33 H 0.178 0.822 34 H 0.273 0.727 35 H 0.104 0.896 36 H 0.159 0.841 37 H 0.048 0.952 38 H 0.135 0.865 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.069 0.931 43 H 0.100 0.900 44 H 0.044 0.956 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.744 28.492 5.487 30.608 hybrid contribution -0.531 0.067 -1.079 1.205 sum -10.275 28.560 4.408 30.670 Atomic orbital electron populations 1.20780 0.87553 1.04395 1.03800 1.20689 0.99069 0.91498 1.06426 1.21744 0.93913 0.98459 0.94016 1.22369 0.95976 0.99546 1.03671 1.22948 1.00822 0.87418 0.94812 1.67574 1.07199 1.32918 1.15949 1.18673 0.88771 0.86258 0.96233 1.43608 1.11248 1.02900 1.72528 1.21253 0.88493 0.85729 0.75958 1.90797 1.15203 1.86721 1.43888 1.22069 0.93838 0.87087 1.05925 1.61538 1.25796 1.02942 1.35442 1.22401 0.94770 0.87548 1.01935 1.21368 0.92149 0.98333 0.88592 1.48143 1.50211 1.08855 1.31266 1.18614 0.82619 0.81198 0.82701 1.90523 1.55497 1.33432 1.72357 1.21486 1.25128 0.95937 1.18168 0.89376 1.26973 0.97747 0.94038 0.99788 1.70181 1.37455 0.99866 1.37545 0.85061 0.77599 0.78915 0.77016 1.18459 1.17424 1.19534 1.21587 0.94742 0.82351 1.00509 1.22524 0.95636 0.99778 0.89442 0.89538 0.89097 0.90864 0.81200 0.82025 0.82184 0.72706 0.89594 0.84119 0.95190 0.86480 0.91868 0.92591 0.91535 0.93133 0.90010 0.95622 0.89025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.59 9.59 71.24 0.68 0.09 16 2 C -0.17 -2.34 5.91 -19.64 -0.12 -2.46 16 3 C -0.06 -0.62 9.85 22.44 0.22 -0.40 16 4 C -0.19 -2.63 10.11 22.37 0.23 -2.40 16 5 C 0.10 2.03 11.18 84.65 0.95 2.98 16 6 N -0.52 -14.47 7.87 -193.04 -1.52 -15.99 16 7 C 0.33 7.13 7.41 132.89 0.98 8.12 16 8 N -0.65 -11.74 5.30 -308.47 -1.63 -13.38 16 9 C 0.50 12.42 7.46 87.66 0.65 13.07 16 10 O -0.50 -17.52 12.58 -3.02 -0.04 -17.56 16 11 C 0.04 0.84 5.45 85.56 0.47 1.30 16 12 N -0.53 -16.06 4.37 -898.86 -3.93 -19.99 16 13 C 0.06 1.89 5.62 86.38 0.49 2.37 16 14 C 0.12 4.97 6.61 86.35 0.57 5.54 16 15 N -0.65 -32.12 3.00 -822.12 -2.47 -34.59 16 16 C 0.54 33.16 7.63 86.36 0.66 33.82 16 17 O -0.63 -43.67 14.49 -4.31 -0.06 -43.73 16 18 C -0.57 -33.80 8.86 24.83 0.22 -33.58 16 19 H 0.09 4.76 5.74 -2.91 -0.02 4.75 16 20 C 0.03 1.71 5.50 85.30 0.47 2.18 16 21 N -0.82 -51.54 11.84 21.83 0.26 -51.28 16 22 Si 0.99 42.48 29.56 68.60 2.03 44.51 16 23 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 24 H -0.25 -10.08 7.11 99.48 0.71 -9.38 16 25 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 26 C 0.13 5.62 6.50 86.50 0.56 6.18 16 27 C 0.05 1.94 5.27 86.54 0.46 2.40 16 28 H 0.09 0.31 8.14 -2.38 -0.02 0.29 16 29 H 0.09 0.23 8.10 -2.39 -0.02 0.21 16 30 H 0.07 0.27 6.57 -2.39 -0.02 0.26 16 31 H 0.17 0.65 8.06 -2.91 -0.02 0.63 16 32 H 0.16 1.15 8.06 -2.91 -0.02 1.13 16 33 H 0.16 2.89 8.06 -2.91 -0.02 2.86 16 34 H 0.43 3.85 6.68 -92.71 -0.62 3.23 16 35 H 0.09 1.41 8.12 -2.39 -0.02 1.39 16 36 H 0.14 1.82 7.97 -2.39 -0.02 1.80 16 37 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.12 2.62 7.99 -2.39 -0.02 2.60 16 39 H 0.06 2.93 7.04 -2.39 -0.02 2.91 16 40 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 41 H 0.27 15.57 8.29 -92.71 -0.77 14.80 16 42 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 43 H 0.08 3.61 5.46 -2.39 -0.01 3.60 16 44 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.09 3.28 5.76 -2.38 -0.01 3.26 16 Total: -1.00 -92.97 365.87 0.53 -92.44 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: 0.41 Total: 20.37 kcal Atomic # 6 Polarization: 31.72 SS G_CDS: 7.49 Total: 39.20 kcal Atomic # 7 Polarization: -125.93 SS G_CDS: -9.29 Total: -135.23 kcal Atomic # 8 Polarization: -61.19 SS G_CDS: -0.10 Total: -61.29 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -92.97 0.53 -92.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878673160.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.095 kcal (2) G-P(sol) polarization free energy of solvation -92.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds