Wall clock time and date at job start Tue Mar 31 2020 16:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00297 * 2 1 4 4 H 1.48492 * 109.47151 * 270.00533 * 3 2 1 5 5 H 1.48497 * 109.46800 * 30.00412 * 3 2 1 6 6 H 1.48500 * 109.46956 * 149.99942 * 3 2 1 7 7 C 1.37883 * 119.99841 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99782 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99793 * 179.97438 * 7 2 1 10 10 N 1.46503 * 109.46486 * 179.97438 * 9 7 2 11 11 C 1.34964 * 125.97231 * 125.00726 * 10 9 7 12 12 C 1.35239 * 107.85911 * 180.02562 * 11 10 9 13 13 C 1.40406 * 107.86908 * 359.97438 * 12 11 10 14 14 N 1.40194 * 125.97588 * 179.97438 * 13 12 11 15 15 C 1.34775 * 119.99802 * 0.02562 * 14 13 12 16 16 O 1.21593 * 120.00151 * 359.97438 * 15 14 13 17 17 N 1.34777 * 119.99585 * 179.97438 * 15 14 13 18 18 C 1.46499 * 119.99665 * 179.72218 * 17 15 14 19 19 H 1.08999 * 110.35743 * 325.97762 * 18 17 15 20 20 C 1.54834 * 110.39990 * 88.29288 * 18 17 15 21 21 H 1.09002 * 112.74684 * 352.58988 * 20 18 17 22 22 O 1.43408 * 108.07128 * 226.60841 * 20 18 17 23 23 C 1.43126 * 109.91562 * 275.74186 * 22 20 18 24 24 C 1.54453 * 107.46794 * 358.20364 * 23 22 20 25 25 H 1.08997 * 113.70013 * 213.62714 * 24 23 22 26 26 C 1.54868 * 107.37997 * 86.13374 * 24 23 22 27 27 C 1.55900 * 104.57624 * 256.51178 * 26 24 23 28 28 H 1.09000 * 116.66139 * 196.88505 * 27 26 24 29 29 C 1.56722 * 100.66832 * 323.69372 * 27 26 24 30 30 C 1.56245 * 96.62085 * 53.51425 * 29 27 26 31 31 H 1.08994 * 116.63791 * 180.54271 * 30 29 27 32 32 N 1.31212 * 108.04884 * 0.27002 * 13 12 11 33 33 H 0.97000 * 119.99976 * 359.97438 * 1 2 3 34 34 H 1.09001 * 109.46890 * 59.99889 * 9 7 2 35 35 H 1.08993 * 109.47028 * 300.00085 * 9 7 2 36 36 H 1.08003 * 126.07358 * 0.02562 * 11 10 9 37 37 H 1.08004 * 126.07198 * 180.02562 * 12 11 10 38 38 H 0.97000 * 119.99675 * 180.02562 * 14 13 12 39 39 H 0.97001 * 120.00485 * 0.02562 * 17 15 14 40 40 H 1.09000 * 109.84707 * 238.71903 * 23 22 20 41 41 H 1.09004 * 109.94320 * 117.73583 * 23 22 20 42 42 H 1.09003 * 110.41235 * 137.73796 * 26 24 23 43 43 H 1.09001 * 110.41427 * 15.28802 * 26 24 23 44 44 H 1.09005 * 111.92854 * 170.38612 * 29 27 26 45 45 H 1.09005 * 111.93274 * 296.64069 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9997 -2.5754 -0.0010 11 6 4.8543 -3.1142 -0.8959 12 6 5.0549 -4.4066 -0.5516 13 6 4.2941 -4.6691 0.5989 14 7 4.2225 -5.8939 1.2772 15 6 4.9267 -6.9531 0.8316 16 8 5.6238 -6.8465 -0.1590 17 7 4.8582 -8.1305 1.4840 18 6 5.6189 -9.2835 0.9961 19 1 5.6758 -9.2672 -0.0923 20 6 7.0401 -9.2917 1.6106 21 1 7.2584 -8.3880 2.1797 22 8 7.9796 -9.5377 0.5555 23 6 8.0964 -10.9455 0.3252 24 6 7.1859 -11.6598 1.3481 25 1 7.5734 -12.6220 1.6827 26 6 5.7641 -11.7224 0.7373 27 6 4.9661 -10.6121 1.4863 28 1 3.8792 -10.6633 1.4222 29 6 5.5834 -10.7297 2.9220 30 6 7.0777 -10.5893 2.4877 31 1 7.8237 -10.6382 3.2808 32 7 3.6569 -3.5692 0.9246 33 1 -0.4850 0.8400 0.0004 34 1 3.8752 -0.6804 0.8889 35 1 3.8745 -0.6801 -0.8911 36 1 5.2991 -2.6040 -1.7375 37 1 5.6886 -5.1116 -1.0692 38 1 3.6661 -5.9790 2.0672 39 1 4.3018 -8.2156 2.2740 40 1 9.1305 -11.2592 0.4675 41 1 7.7735 -11.1845 -0.6881 42 1 5.3159 -12.6996 0.9169 43 1 5.7996 -11.5099 -0.3312 44 1 5.2687 -9.9105 3.5687 45 1 5.3804 -11.7005 3.3743 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878765505.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:09 Heat of formation + Delta-G solvation = 34.502787 kcal Electronic energy + Delta-G solvation = -28233.172182 eV Core-core repulsion = 24253.244742 eV Total energy + Delta-G solvation = -3979.927440 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.08816 -40.65306 -39.37167 -36.35421 -34.79634 -34.33703 -33.21988 -31.40254 -30.73904 -29.38419 -29.21792 -27.47373 -26.89387 -25.50606 -22.86317 -21.86063 -21.00194 -20.69283 -20.33775 -19.98615 -19.59506 -18.02185 -17.57709 -17.00727 -16.56225 -16.39041 -15.64000 -15.24432 -15.07503 -15.00826 -14.52908 -14.42735 -14.23387 -14.07803 -13.59831 -13.41697 -13.00361 -12.60582 -12.50130 -12.26622 -12.09464 -11.96069 -11.81675 -11.52327 -11.27659 -11.21491 -11.12889 -11.02865 -10.81920 -10.74433 -10.61891 -10.11556 -10.04944 -9.96421 -9.70066 -9.48819 -9.05053 -8.74366 -8.12042 -7.42715 -6.21290 -4.23175 2.35202 2.64236 3.10213 3.17310 3.24520 3.25140 3.40673 3.54000 3.79041 3.82654 3.91769 4.22237 4.25105 4.32544 4.46613 4.55843 4.60426 4.73913 4.77794 4.83250 5.02005 5.06784 5.23916 5.32352 5.36685 5.40220 5.46106 5.50494 5.53729 5.57446 5.61617 5.74160 5.79310 5.82845 6.20589 6.32974 6.38107 6.52046 6.60785 6.75416 6.81710 7.01172 7.30937 7.48874 7.86817 7.94230 8.36913 8.62802 8.64222 8.89087 9.33973 10.91475 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.033469 B = 0.002146 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.391743 B =13042.383170 C =13450.086113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.075 3.925 3 Si 0.873 3.127 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.533 4.533 8 H 0.085 0.915 9 C 0.232 3.768 10 N -0.321 5.321 11 C 0.050 3.950 12 C -0.281 4.281 13 C 0.279 3.721 14 N -0.644 5.644 15 C 0.711 3.289 16 O -0.559 6.559 17 N -0.736 5.736 18 C 0.142 3.858 19 H 0.104 0.896 20 C 0.075 3.925 21 H 0.113 0.887 22 O -0.365 6.365 23 C 0.051 3.949 24 C -0.127 4.127 25 H 0.103 0.897 26 C -0.115 4.115 27 C -0.110 4.110 28 H 0.112 0.888 29 C -0.120 4.120 30 C -0.131 4.131 31 H 0.110 0.890 32 N -0.301 5.301 33 H 0.268 0.732 34 H 0.041 0.959 35 H 0.049 0.951 36 H 0.168 0.832 37 H 0.163 0.837 38 H 0.407 0.593 39 H 0.396 0.604 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.962 -25.492 5.564 29.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.128 4.128 3 Si 0.699 3.301 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.571 4.571 8 H 0.103 0.897 9 C 0.113 3.887 10 N -0.103 5.103 11 C -0.099 4.099 12 C -0.313 4.313 13 C 0.024 3.976 14 N -0.294 5.294 15 C 0.411 3.589 16 O -0.434 6.434 17 N -0.393 5.393 18 C 0.036 3.964 19 H 0.122 0.878 20 C 0.016 3.984 21 H 0.130 0.870 22 O -0.283 6.283 23 C -0.026 4.026 24 C -0.145 4.145 25 H 0.122 0.878 26 C -0.153 4.153 27 C -0.129 4.129 28 H 0.130 0.870 29 C -0.157 4.157 30 C -0.150 4.150 31 H 0.128 0.872 32 N -0.131 5.131 33 H 0.078 0.922 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.185 0.815 37 H 0.180 0.820 38 H 0.241 0.759 39 H 0.230 0.770 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.094 0.906 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 13.723 -24.437 5.309 28.525 hybrid contribution 0.127 0.360 0.312 0.493 sum 13.850 -24.077 5.620 28.340 Atomic orbital electron populations 1.69872 1.06158 1.27254 1.49309 1.24839 0.94872 0.98800 0.94308 0.86904 0.80445 0.83829 0.78917 1.19715 1.20574 1.18853 1.21120 0.87839 0.95677 1.52477 0.89653 1.20027 0.97398 0.73105 0.98135 1.48574 1.32630 1.10137 1.18974 1.22547 0.96062 0.94664 0.96654 1.21550 1.11467 0.96696 1.01540 1.18791 0.98587 0.85882 0.94298 1.41393 1.49230 1.07343 1.31418 1.15664 0.80429 0.79828 0.83017 1.90899 1.43436 1.82668 1.26355 1.44987 1.52122 1.09548 1.32617 1.22746 0.90050 0.83037 1.00542 0.87785 1.24440 0.88601 0.98075 0.87260 0.86969 1.88446 1.62596 1.22438 1.54834 1.23321 0.99352 0.81540 0.98395 1.23657 0.96203 0.99400 0.95273 0.87831 1.22785 0.93919 0.98709 0.99921 1.23830 0.99585 0.93875 0.95595 0.87032 1.23350 0.93826 1.02300 0.96261 1.24675 0.98172 0.94662 0.97474 0.87164 1.77375 1.23795 0.95609 1.16351 0.92219 0.94101 0.93357 0.81454 0.81973 0.75858 0.76973 0.91495 0.91210 0.90720 0.90550 0.90627 0.90326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.79 13.96 55.43 0.77 -26.01 16 2 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 3 Si 0.87 20.30 27.47 -169.99 -4.67 15.63 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.26 -5.82 6.54 56.52 0.37 -5.45 16 7 C -0.53 -15.18 9.79 -34.44 -0.34 -15.52 16 8 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 9 C 0.23 5.59 5.33 -5.19 -0.03 5.56 16 10 N -0.32 -7.42 3.67 -62.56 -0.23 -7.65 16 11 C 0.05 0.99 11.44 -17.24 -0.20 0.79 16 12 C -0.28 -5.68 9.61 -39.83 -0.38 -6.06 16 13 C 0.28 5.69 8.11 -154.36 -1.25 4.44 16 14 N -0.64 -10.11 5.46 -15.50 -0.08 -10.19 16 15 C 0.71 10.61 8.53 -86.92 -0.74 9.87 16 16 O -0.56 -10.43 13.14 5.28 0.07 -10.36 16 17 N -0.74 -7.37 5.10 -56.20 -0.29 -7.66 16 18 C 0.14 1.35 2.23 -65.39 -0.15 1.20 16 19 H 0.10 1.29 7.14 -51.93 -0.37 0.92 16 20 C 0.08 0.73 4.50 -23.79 -0.11 0.63 16 21 H 0.11 1.21 8.06 -51.93 -0.42 0.79 16 22 O -0.37 -4.33 10.85 -35.23 -0.38 -4.72 16 23 C 0.05 0.40 7.07 37.92 0.27 0.67 16 24 C -0.13 -0.73 4.34 -86.86 -0.38 -1.11 16 25 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 26 C -0.12 -0.65 5.77 -24.20 -0.14 -0.79 16 27 C -0.11 -0.67 4.77 -85.49 -0.41 -1.08 16 28 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 29 C -0.12 -0.61 6.43 -22.98 -0.15 -0.75 16 30 C -0.13 -0.84 5.13 -84.88 -0.44 -1.27 16 31 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 32 N -0.30 -6.99 12.42 31.44 0.39 -6.60 16 33 H 0.27 7.47 8.31 -40.82 -0.34 7.14 16 34 H 0.04 0.98 7.20 -51.93 -0.37 0.60 16 35 H 0.05 1.05 7.50 -51.93 -0.39 0.67 16 36 H 0.17 2.65 8.06 -52.48 -0.42 2.23 16 37 H 0.16 3.26 5.91 -52.48 -0.31 2.95 16 38 H 0.41 5.13 8.84 -40.82 -0.36 4.77 16 39 H 0.40 2.74 8.42 -40.82 -0.34 2.40 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.53 7.35 -51.93 -0.38 0.14 16 42 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.08 0.49 6.95 -51.93 -0.36 0.13 16 44 H 0.08 0.36 7.92 -51.93 -0.41 -0.06 16 45 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 359.89 15.07 5.42 5.42 Total: -1.00 -35.81 359.89 -9.79 -45.60 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -6.27 Total: 7.94 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -4.53 Total: -1.40 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: 0.56 Total: -58.12 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.31 Total: -15.08 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -4.67 Total: 15.63 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.81 -9.79 -45.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878765505.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.102 kcal (2) G-P(sol) polarization free energy of solvation -35.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds