Wall clock time and date at job start Tue Mar 31 2020 16:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00297 * 2 1 4 4 H 1.48492 * 109.47151 * 270.00533 * 3 2 1 5 5 H 1.48497 * 109.46800 * 30.00412 * 3 2 1 6 6 H 1.48500 * 109.46956 * 149.99942 * 3 2 1 7 7 C 1.37883 * 119.99841 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99782 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99793 * 179.97438 * 7 2 1 10 10 N 1.46503 * 109.46486 * 179.97438 * 9 7 2 11 11 C 1.34964 * 125.97231 * 125.00726 * 10 9 7 12 12 C 1.35239 * 107.85911 * 180.02562 * 11 10 9 13 13 C 1.40406 * 107.86908 * 359.97438 * 12 11 10 14 14 N 1.40194 * 125.97588 * 179.97438 * 13 12 11 15 15 C 1.34775 * 119.99802 * 0.02562 * 14 13 12 16 16 O 1.21593 * 120.00151 * 359.97438 * 15 14 13 17 17 N 1.34777 * 119.99585 * 179.97438 * 15 14 13 18 18 C 1.46499 * 119.99665 * 179.72218 * 17 15 14 19 19 H 1.08999 * 110.35743 * 325.97762 * 18 17 15 20 20 C 1.54834 * 110.39990 * 88.29288 * 18 17 15 21 21 H 1.09002 * 112.74684 * 352.58988 * 20 18 17 22 22 O 1.43408 * 108.07128 * 226.60841 * 20 18 17 23 23 C 1.43126 * 109.91562 * 275.74186 * 22 20 18 24 24 C 1.54453 * 107.46794 * 358.20364 * 23 22 20 25 25 H 1.08997 * 113.70013 * 213.62714 * 24 23 22 26 26 C 1.54868 * 107.37997 * 86.13374 * 24 23 22 27 27 C 1.55900 * 104.57624 * 256.51178 * 26 24 23 28 28 H 1.09000 * 116.66139 * 196.88505 * 27 26 24 29 29 C 1.56722 * 100.66832 * 323.69372 * 27 26 24 30 30 C 1.56245 * 96.62085 * 53.51425 * 29 27 26 31 31 H 1.08994 * 116.63791 * 180.54271 * 30 29 27 32 32 N 1.31212 * 108.04884 * 0.27002 * 13 12 11 33 33 H 0.97000 * 119.99976 * 359.97438 * 1 2 3 34 34 H 1.09001 * 109.46890 * 59.99889 * 9 7 2 35 35 H 1.08993 * 109.47028 * 300.00085 * 9 7 2 36 36 H 1.08003 * 126.07358 * 0.02562 * 11 10 9 37 37 H 1.08004 * 126.07198 * 180.02562 * 12 11 10 38 38 H 0.97000 * 119.99675 * 180.02562 * 14 13 12 39 39 H 0.97001 * 120.00485 * 0.02562 * 17 15 14 40 40 H 1.09000 * 109.84707 * 238.71903 * 23 22 20 41 41 H 1.09004 * 109.94320 * 117.73583 * 23 22 20 42 42 H 1.09003 * 110.41235 * 137.73796 * 26 24 23 43 43 H 1.09001 * 110.41427 * 15.28802 * 26 24 23 44 44 H 1.09005 * 111.92854 * 170.38612 * 29 27 26 45 45 H 1.09005 * 111.93274 * 296.64069 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9997 -2.5754 -0.0010 11 6 4.8543 -3.1142 -0.8959 12 6 5.0549 -4.4066 -0.5516 13 6 4.2941 -4.6691 0.5989 14 7 4.2225 -5.8939 1.2772 15 6 4.9267 -6.9531 0.8316 16 8 5.6238 -6.8465 -0.1590 17 7 4.8582 -8.1305 1.4840 18 6 5.6189 -9.2835 0.9961 19 1 5.6758 -9.2672 -0.0923 20 6 7.0401 -9.2917 1.6106 21 1 7.2584 -8.3880 2.1797 22 8 7.9796 -9.5377 0.5555 23 6 8.0964 -10.9455 0.3252 24 6 7.1859 -11.6598 1.3481 25 1 7.5734 -12.6220 1.6827 26 6 5.7641 -11.7224 0.7373 27 6 4.9661 -10.6121 1.4863 28 1 3.8792 -10.6633 1.4222 29 6 5.5834 -10.7297 2.9220 30 6 7.0777 -10.5893 2.4877 31 1 7.8237 -10.6382 3.2808 32 7 3.6569 -3.5692 0.9246 33 1 -0.4850 0.8400 0.0004 34 1 3.8752 -0.6804 0.8889 35 1 3.8745 -0.6801 -0.8911 36 1 5.2991 -2.6040 -1.7375 37 1 5.6886 -5.1116 -1.0692 38 1 3.6661 -5.9790 2.0672 39 1 4.3018 -8.2156 2.2740 40 1 9.1305 -11.2592 0.4675 41 1 7.7735 -11.1845 -0.6881 42 1 5.3159 -12.6996 0.9169 43 1 5.7996 -11.5099 -0.3312 44 1 5.2687 -9.9105 3.5687 45 1 5.3804 -11.7005 3.3743 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878765505.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:08 Heat of formation + Delta-G solvation = 8.209406 kcal Electronic energy + Delta-G solvation = -28234.312349 eV Core-core repulsion = 24253.244742 eV Total energy + Delta-G solvation = -3981.067607 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.76002 -42.16545 -40.67299 -37.12850 -36.23868 -35.39634 -35.10500 -33.08722 -31.57647 -30.95135 -29.85812 -28.97720 -27.87864 -26.23616 -24.61412 -23.21688 -22.03222 -21.53144 -21.44398 -21.11942 -20.39208 -19.22838 -19.07584 -18.41699 -17.96160 -17.27430 -16.96785 -16.50905 -16.28453 -15.93314 -15.81837 -15.44707 -15.17554 -15.15142 -14.92954 -14.72686 -14.34907 -14.00786 -13.90302 -13.81952 -13.25330 -12.99550 -12.53488 -12.49167 -12.33718 -12.29276 -12.02493 -11.83324 -11.77800 -11.74851 -11.62571 -11.57700 -11.48825 -11.39656 -11.11172 -10.90918 -10.86436 -9.98827 -9.73233 -9.04240 -8.37057 -6.47108 1.02758 1.11191 1.37108 1.40220 1.49906 1.67994 2.07520 2.29455 2.38418 2.79936 2.95335 3.08050 3.32536 3.39308 3.63574 3.86793 3.91863 3.94766 4.04181 4.20444 4.24300 4.26504 4.34421 4.50098 4.54596 4.61089 4.71433 4.77570 4.83249 4.85579 4.93184 4.94559 4.95549 5.08659 5.09721 5.14511 5.15912 5.23529 5.25013 5.35979 5.50055 5.79839 5.92322 6.01855 6.12744 6.41644 6.57867 6.72913 7.11933 7.15975 7.42762 8.80059 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.033469 B = 0.002146 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.391743 B =13042.383170 C =13450.086113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.014 3.986 3 Si 0.956 3.044 4 H -0.254 1.254 5 H -0.280 1.280 6 H -0.240 1.240 7 C -0.546 4.546 8 H 0.026 0.974 9 C 0.239 3.761 10 N -0.345 5.345 11 C 0.061 3.939 12 C -0.295 4.295 13 C 0.285 3.715 14 N -0.636 5.636 15 C 0.709 3.291 16 O -0.598 6.598 17 N -0.712 5.712 18 C 0.139 3.861 19 H 0.069 0.931 20 C 0.064 3.936 21 H 0.093 0.907 22 O -0.404 6.404 23 C 0.040 3.960 24 C -0.116 4.116 25 H 0.131 0.869 26 C -0.116 4.116 27 C -0.102 4.102 28 H 0.125 0.875 29 C -0.110 4.110 30 C -0.124 4.124 31 H 0.122 0.878 32 N -0.347 5.347 33 H 0.272 0.728 34 H 0.046 0.954 35 H 0.081 0.919 36 H 0.210 0.790 37 H 0.164 0.836 38 H 0.421 0.579 39 H 0.415 0.585 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.099 0.901 43 H 0.061 0.939 44 H 0.081 0.919 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.458 -26.476 6.528 31.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.185 4.185 3 Si 0.776 3.224 4 H -0.178 1.178 5 H -0.206 1.206 6 H -0.163 1.163 7 C -0.584 4.584 8 H 0.045 0.955 9 C 0.120 3.880 10 N -0.127 5.127 11 C -0.087 4.087 12 C -0.326 4.326 13 C 0.029 3.971 14 N -0.288 5.288 15 C 0.409 3.591 16 O -0.476 6.476 17 N -0.369 5.369 18 C 0.033 3.967 19 H 0.087 0.913 20 C 0.005 3.995 21 H 0.111 0.889 22 O -0.323 6.323 23 C -0.036 4.036 24 C -0.135 4.135 25 H 0.148 0.852 26 C -0.154 4.154 27 C -0.120 4.120 28 H 0.143 0.857 29 C -0.147 4.147 30 C -0.142 4.142 31 H 0.140 0.860 32 N -0.178 5.178 33 H 0.081 0.919 34 H 0.064 0.936 35 H 0.099 0.901 36 H 0.227 0.773 37 H 0.181 0.819 38 H 0.258 0.742 39 H 0.252 0.748 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.117 0.883 43 H 0.080 0.920 44 H 0.100 0.900 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 15.218 -25.500 6.316 30.360 hybrid contribution -0.332 0.488 -0.029 0.591 sum 14.886 -25.012 6.287 29.778 Atomic orbital electron populations 1.70047 1.08548 1.28791 1.50709 1.25926 0.95788 1.03537 0.93242 0.85612 0.79496 0.77196 0.80054 1.17777 1.20572 1.16275 1.21229 0.90476 0.93739 1.52980 0.95531 1.19889 0.94188 0.74331 0.99620 1.48492 1.34051 1.10021 1.20144 1.23214 0.94423 0.94547 0.96525 1.21706 1.11907 0.97140 1.01836 1.19122 0.97198 0.86560 0.94256 1.41396 1.49591 1.06225 1.31634 1.15866 0.79841 0.80582 0.82836 1.90866 1.45026 1.83404 1.28256 1.44839 1.51599 1.08025 1.32423 1.22858 0.90827 0.84239 0.98727 0.91273 1.24494 0.88031 0.99337 0.87621 0.88879 1.88396 1.63235 1.24924 1.55753 1.23528 1.00627 0.80236 0.99198 1.23707 0.95685 1.00017 0.94052 0.85154 1.22816 0.93945 0.99564 0.99038 1.23882 1.00240 0.91393 0.96514 0.85714 1.23364 0.92146 1.03859 0.95358 1.24687 0.99699 0.92440 0.97382 0.85958 1.77295 1.25817 0.96723 1.17972 0.91881 0.93636 0.90098 0.77329 0.81916 0.74222 0.74779 0.90635 0.91550 0.88261 0.91988 0.90048 0.87951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.45 13.96 21.45 0.30 -58.15 16 2 C 0.01 0.79 5.47 84.66 0.46 1.25 16 3 Si 0.96 41.13 27.47 68.60 1.88 43.02 16 4 H -0.25 -10.16 7.11 99.48 0.71 -9.45 16 5 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 6 H -0.24 -9.32 6.54 99.48 0.65 -8.67 16 7 C -0.55 -31.94 9.79 25.60 0.25 -31.68 16 8 H 0.03 1.81 8.06 -2.91 -0.02 1.79 16 9 C 0.24 11.31 5.33 85.63 0.46 11.77 16 10 N -0.35 -15.95 3.67 -351.84 -1.29 -17.24 16 11 C 0.06 2.37 11.44 83.52 0.96 3.32 16 12 C -0.29 -11.99 9.61 22.11 0.21 -11.78 16 13 C 0.28 11.85 8.11 133.31 1.08 12.93 16 14 N -0.64 -20.33 5.46 -321.23 -1.75 -22.08 16 15 C 0.71 21.60 8.53 179.05 1.53 23.12 16 16 O -0.60 -23.17 13.14 -4.01 -0.05 -23.22 16 17 N -0.71 -14.09 5.10 -449.99 -2.29 -16.38 16 18 C 0.14 2.63 2.23 46.64 0.10 2.74 16 19 H 0.07 1.83 7.14 -2.39 -0.02 1.81 16 20 C 0.06 1.25 4.50 32.50 0.15 1.39 16 21 H 0.09 2.09 8.06 -2.39 -0.02 2.07 16 22 O -0.40 -10.00 10.85 -148.98 -1.62 -11.61 16 23 C 0.04 0.63 7.07 72.48 0.51 1.14 16 24 C -0.12 -1.07 4.34 -8.36 -0.04 -1.11 16 25 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16 26 C -0.12 -1.04 5.77 32.24 0.19 -0.86 16 27 C -0.10 -1.02 4.77 -7.47 -0.04 -1.06 16 28 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 29 C -0.11 -0.74 6.43 33.02 0.21 -0.53 16 30 C -0.12 -1.31 5.13 -7.08 -0.04 -1.34 16 31 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 32 N -0.35 -16.57 12.42 -54.43 -0.68 -17.24 16 33 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 34 H 0.05 2.10 7.20 -2.39 -0.02 2.08 16 35 H 0.08 3.29 7.50 -2.39 -0.02 3.27 16 36 H 0.21 6.05 8.06 -2.91 -0.02 6.02 16 37 H 0.16 6.65 5.91 -2.91 -0.02 6.63 16 38 H 0.42 10.68 8.84 -92.71 -0.82 9.86 16 39 H 0.41 5.17 8.42 -92.71 -0.78 4.39 16 40 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.07 1.04 7.35 -2.38 -0.02 1.02 16 42 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 43 H 0.06 0.76 6.95 -2.39 -0.02 0.74 16 44 H 0.08 0.49 7.92 -2.38 -0.02 0.48 16 45 H 0.10 0.33 8.14 -2.38 -0.02 0.31 16 Total: -1.00 -83.72 359.89 -0.11 -83.83 By element: Atomic # 1 Polarization: 30.39 SS G_CDS: -0.61 Total: 29.78 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: 6.00 Total: 9.30 kcal Atomic # 7 Polarization: -125.38 SS G_CDS: -5.71 Total: -131.10 kcal Atomic # 8 Polarization: -33.17 SS G_CDS: -1.67 Total: -34.84 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 1.88 Total: 43.02 kcal Total: -83.72 -0.11 -83.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878765505.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.042 kcal (2) G-P(sol) polarization free energy of solvation -83.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds